Wall clock time and date at job start Fri Apr 10 2020 23:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38505 * 125.83638 * 2 1 4 4 C 1.40116 * 125.92436 * 0.02829 * 3 2 1 5 5 H 1.08005 * 120.00327 * 8.29154 * 4 3 2 6 6 C 1.40038 * 119.99750 * 188.28133 * 4 3 2 7 7 N 1.30796 * 119.99972 * 191.58188 * 6 4 3 8 8 Si 1.86800 * 119.99967 * 11.31366 * 6 4 3 9 9 H 1.48502 * 109.46705 * 270.27030 * 8 6 4 10 10 H 1.48491 * 109.47102 * 30.27399 * 8 6 4 11 11 H 1.48498 * 109.47080 * 150.27476 * 8 6 4 12 12 N 1.32231 * 108.14504 * 180.29407 * 3 2 1 13 13 N 1.40166 * 107.76203 * 359.58959 * 12 3 2 14 14 C 1.46503 * 126.14652 * 180.16315 * 13 12 3 15 15 N 1.46897 * 109.46877 * 270.29127 * 14 13 12 16 16 C 1.48913 * 111.00218 * 282.52888 * 15 14 13 17 17 C 1.51550 * 104.09501 * 205.79271 * 16 15 14 18 18 C 1.37979 * 132.18431 * 202.85118 * 17 16 15 19 19 C 1.38284 * 119.93665 * 180.02562 * 18 17 16 20 20 C 1.38263 * 120.04224 * 0.02562 * 19 18 17 21 21 C 1.38290 * 120.03015 * 0.02562 * 20 19 18 22 22 C 1.37980 * 119.94339 * 359.97438 * 21 20 19 23 23 C 1.48916 * 110.99700 * 170.00259 * 15 14 13 24 24 C 1.34725 * 125.83717 * 180.02562 * 2 1 3 25 25 S 1.71201 * 125.96726 * 359.97438 * 24 2 1 26 26 H 1.08998 * 109.46788 * 90.00304 * 1 2 3 27 27 H 1.08994 * 109.47681 * 210.00561 * 1 2 3 28 28 H 1.09006 * 109.47110 * 330.01004 * 1 2 3 29 29 H 0.97001 * 120.00352 * 354.48820 * 7 6 4 30 30 H 1.08997 * 109.46866 * 30.29563 * 14 13 12 31 31 H 1.09001 * 109.46992 * 150.29273 * 14 13 12 32 32 H 1.08993 * 110.50253 * 324.44729 * 16 15 14 33 33 H 1.09002 * 110.50318 * 87.14330 * 16 15 14 34 34 H 1.08002 * 120.03317 * 0.04935 * 18 17 16 35 35 H 1.08011 * 119.98348 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.98886 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.02391 * 179.97438 * 21 20 19 38 38 H 1.09007 * 110.50090 * 272.86018 * 23 15 14 39 39 H 1.08995 * 110.50300 * 35.41440 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2759 1.1228 0.0000 4 6 1.8374 2.4536 0.0006 5 1 0.7893 2.6768 0.1359 6 6 2.7580 3.4942 -0.1742 7 7 2.3970 4.7313 0.0497 8 14 4.5038 3.1150 -0.7198 9 1 5.3568 2.8862 0.4741 10 1 4.5034 1.8967 -1.5688 11 1 5.0391 4.2607 -1.4983 12 7 3.5357 0.7210 -0.0064 13 7 3.5374 -0.6806 -0.0011 14 6 4.7215 -1.5433 -0.0019 15 7 5.1166 -1.8312 -1.3872 16 6 4.2311 -2.8652 -1.9908 17 6 5.0892 -3.5053 -3.0635 18 6 4.7711 -4.2050 -4.2094 19 6 5.7780 -4.6878 -5.0251 20 6 7.1023 -4.4701 -4.6926 21 6 7.4213 -3.7698 -3.5436 22 6 6.4169 -3.2879 -2.7295 23 6 6.4458 -2.5009 -1.4348 24 6 2.2538 -1.0922 -0.0005 25 16 1.7192 -2.7186 -0.0006 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8898 0.5139 28 1 -0.3634 0.8901 0.5137 29 1 1.4722 4.9364 0.2588 30 1 5.5395 -1.0381 0.5117 31 1 4.4914 -2.4767 0.5117 32 1 3.9411 -3.6032 -1.2429 33 1 3.3494 -2.4017 -2.4333 34 1 3.7367 -4.3752 -4.4692 35 1 5.5299 -5.2360 -5.9220 36 1 7.8880 -4.8479 -5.3301 37 1 8.4558 -3.6002 -3.2839 38 1 7.2457 -1.7607 -1.4551 39 1 6.5671 -3.1695 -0.5826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794625926.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:16:43 Heat of formation + Delta-G solvation = 105.386797 kcal Electronic energy + Delta-G solvation = -23813.611199 eV Core-core repulsion = 20462.359488 eV Total energy + Delta-G solvation = -3351.251710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.105 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.96048 -41.32385 -38.26567 -36.28779 -35.79477 -33.45818 -32.37261 -31.89824 -29.19733 -28.53656 -28.22202 -26.54369 -24.42903 -23.10017 -22.47141 -22.23949 -22.05471 -20.36837 -18.93306 -17.79323 -17.56928 -17.20671 -16.90805 -16.44668 -16.41376 -15.97106 -15.66081 -15.44016 -15.01622 -14.93042 -14.53041 -14.11666 -14.07204 -13.86656 -13.64019 -13.39422 -13.17598 -13.05481 -12.91823 -12.70127 -12.56908 -12.15720 -11.99019 -11.73566 -11.63352 -11.31030 -10.97934 -10.76031 -10.19626 -9.78785 -9.62081 -9.36897 -8.79314 -8.67861 -7.22612 0.28421 0.37137 0.45439 0.57904 1.04036 1.35495 1.54362 1.69492 1.90895 2.11347 2.36097 2.77136 2.80824 2.87788 3.34338 3.47844 3.50145 3.89284 4.00439 4.08618 4.19950 4.23397 4.32499 4.34499 4.43226 4.48661 4.57584 4.59334 4.64605 4.73101 4.76769 4.95886 5.03535 5.10724 5.24094 5.29121 5.44807 5.51423 5.57255 5.66740 5.70732 5.88852 6.06843 6.08322 6.29066 6.87020 7.81531 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.004591 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.719915 B = 6097.139684 C = 7254.713457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.515 5.515 3 C 0.368 3.632 4 C -0.492 4.492 5 H 0.099 0.901 6 C 0.047 3.953 7 N -0.803 5.803 8 Si 1.118 2.882 9 H -0.274 1.274 10 H -0.262 1.262 11 H -0.293 1.293 12 N -0.434 5.434 13 N -0.358 5.358 14 C 0.302 3.698 15 N -0.531 5.531 16 C 0.090 3.910 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.100 4.100 22 C -0.113 4.113 23 C 0.082 3.918 24 C 0.467 3.533 25 S -0.707 6.707 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.293 0.707 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.121 0.879 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.109 0.891 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.370 -11.103 -5.728 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.215 5.215 3 C 0.120 3.880 4 C -0.534 4.534 5 H 0.117 0.883 6 C -0.176 4.176 7 N -0.427 5.427 8 Si 0.944 3.056 9 H -0.200 1.200 10 H -0.188 1.188 11 H -0.221 1.221 12 N -0.270 5.270 13 N -0.145 5.145 14 C 0.092 3.908 15 N -0.256 5.256 16 C -0.038 4.038 17 C -0.121 4.121 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.045 4.045 24 C 0.098 3.902 25 S -0.583 6.583 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.146 0.854 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.168 0.832 36 H 0.175 0.825 37 H 0.167 0.833 38 H 0.128 0.872 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.438 -10.473 -6.219 16.041 hybrid contribution -2.891 -0.383 0.981 3.077 sum 7.546 -10.856 -5.238 14.221 Atomic orbital electron populations 1.22051 0.72762 1.05314 1.04444 1.46176 1.09836 1.03923 1.61594 1.21330 0.84748 0.89437 0.92440 1.19688 0.98778 0.86727 1.48208 0.88266 1.27773 1.08835 0.91153 0.89839 1.70621 1.22072 1.20472 1.29516 0.82690 0.69965 0.74406 0.78583 1.19953 1.18803 1.22119 1.77914 1.15208 0.87342 1.46500 1.48937 1.04251 1.04986 1.56295 1.22300 0.84694 0.92916 0.90939 1.66124 1.04216 1.38411 1.16850 1.21890 0.94319 0.92343 0.95248 1.20788 0.95705 0.99212 0.96416 1.20698 1.00570 0.98561 0.93770 1.21420 0.92676 0.99690 0.99854 1.21489 0.96995 0.98362 0.96829 1.20779 0.99236 0.97766 0.94052 1.20687 0.93954 0.99536 0.97190 1.21855 0.90760 0.96698 0.95139 1.23091 0.84862 0.92799 0.89475 1.92760 1.85186 0.98624 1.81718 0.89941 0.88435 0.88177 0.89504 0.85380 0.89060 0.90708 0.93228 0.86124 0.83233 0.82517 0.83313 0.87244 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.23 10.67 127.77 1.36 4.59 16 2 N -0.52 -22.22 3.17 -548.32 -1.74 -23.96 16 3 C 0.37 17.22 7.20 133.52 0.96 18.18 16 4 C -0.49 -23.13 9.40 23.16 0.22 -22.91 16 5 H 0.10 4.48 7.27 -2.91 -0.02 4.46 16 6 C 0.05 2.26 5.52 85.28 0.47 2.73 16 7 N -0.80 -38.54 13.65 21.84 0.30 -38.24 16 8 Si 1.12 49.04 26.37 68.60 1.81 50.85 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.26 -12.24 6.26 99.48 0.62 -11.62 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 12 N -0.43 -20.44 7.78 -55.17 -0.43 -20.87 16 13 N -0.36 -15.46 3.79 -359.73 -1.36 -16.82 16 14 C 0.30 10.46 5.79 170.81 0.99 11.45 16 15 N -0.53 -17.98 5.71 -903.21 -5.16 -23.14 16 16 C 0.09 3.16 5.04 85.44 0.43 3.59 16 17 C -0.12 -3.64 6.28 -19.56 -0.12 -3.76 16 18 C -0.12 -3.09 10.04 22.22 0.22 -2.86 16 19 C -0.12 -2.37 10.05 22.29 0.22 -2.15 16 20 C -0.12 -2.10 10.05 22.29 0.22 -1.88 16 21 C -0.10 -1.99 10.04 22.22 0.22 -1.76 16 22 C -0.11 -2.91 6.28 -19.57 -0.12 -3.03 16 23 C 0.08 2.05 6.47 85.43 0.55 2.60 16 24 C 0.47 20.74 7.58 179.06 1.36 22.10 16 25 S -0.71 -31.61 27.20 -56.49 -1.54 -33.15 16 26 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.10 3.20 7.61 -2.39 -0.02 3.18 16 28 H 0.10 3.04 7.26 -2.38 -0.02 3.02 16 29 H 0.29 13.33 8.73 -92.71 -0.81 12.52 16 30 H 0.13 3.85 8.08 -2.39 -0.02 3.83 16 31 H 0.09 3.04 7.17 -2.39 -0.02 3.02 16 32 H 0.08 2.77 6.61 -2.39 -0.02 2.75 16 33 H 0.05 2.08 8.04 -2.39 -0.02 2.07 16 34 H 0.12 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.08 1.76 7.94 -2.39 -0.02 1.74 16 Total: -1.00 -62.40 335.77 -0.18 -62.58 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.95 Total: 15.85 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 6.99 Total: 26.89 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -8.39 Total: -123.02 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.81 Total: 50.85 kcal Atomic # 16 Polarization: -31.61 SS G_CDS: -1.54 Total: -33.15 kcal Total: -62.40 -0.18 -62.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794625926.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.962 kcal (2) G-P(sol) polarization free energy of solvation -62.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds