Wall clock time and date at job start Fri Apr 10 2020 23:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46818 * 2 1 4 4 O 1.45198 * 109.46946 * 240.00555 * 2 1 3 5 5 C 1.34230 * 117.00173 * 89.99709 * 4 2 1 6 6 O 1.20822 * 120.00010 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99763 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46925 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47300 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47086 * 59.99960 * 13 11 9 15 15 H 1.48503 * 109.47151 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46879 * 299.99904 * 13 11 9 17 17 C 1.50693 * 109.47132 * 120.00509 * 2 1 3 18 18 O 1.21396 * 120.00499 * 105.00277 * 17 2 1 19 19 C 1.41759 * 120.00058 * 284.99501 * 17 2 1 20 20 C 1.37837 * 126.94175 * 0.03267 * 19 17 2 21 21 N 1.35311 * 109.50980 * 179.97438 * 20 19 17 22 22 H 0.97001 * 124.62133 * 179.97438 * 21 20 19 23 23 C 1.37760 * 110.74619 * 359.97438 * 21 20 19 24 24 N 1.32711 * 132.74267 * 180.02562 * 23 21 20 25 25 C 1.31604 * 121.71009 * 179.97438 * 24 23 21 26 26 C 1.38563 * 121.54199 * 0.02562 * 25 24 23 27 27 C 1.38373 * 119.29390 * 359.97438 * 26 25 24 28 28 C 1.39290 * 118.06404 * 359.69651 * 27 26 25 29 29 H 1.08999 * 109.47111 * 299.99632 * 1 2 3 30 30 H 1.08999 * 109.47362 * 59.99353 * 1 2 3 31 31 H 1.08995 * 109.46990 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47318 * 299.99486 * 7 5 4 33 33 H 1.09000 * 109.47161 * 60.00117 * 7 5 4 34 34 H 1.09004 * 109.46930 * 299.99901 * 8 7 5 35 35 H 1.09004 * 109.47059 * 59.99503 * 8 7 5 36 36 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 37 37 H 1.08002 * 125.24310 * 359.97055 * 20 19 17 38 38 H 1.08002 * 119.22828 * 180.02562 * 25 24 23 39 39 H 1.08003 * 120.35201 * 179.97438 * 26 25 24 40 40 H 1.08001 * 120.96561 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2170 0.0642 -2.2811 6 8 1.9972 1.2519 -2.2506 7 6 2.7181 -0.5770 -3.5496 8 6 2.8634 0.4893 -4.6372 9 6 3.3638 -0.1519 -5.9058 10 1 3.5584 -1.2139 -5.9337 11 6 3.5723 0.6169 -7.0311 12 7 3.3349 1.9100 -6.9972 13 14 4.1920 -0.1780 -8.6038 14 1 3.2243 -1.2123 -9.0502 15 1 4.3331 0.8570 -9.6594 16 1 5.5117 -0.8106 -8.3520 17 6 2.0323 -0.7105 1.2303 18 8 2.4913 -1.8307 1.1396 19 6 1.9691 -0.0707 2.4938 20 6 1.4792 1.1898 2.7604 21 7 1.5878 1.4460 4.0846 22 1 1.3087 2.2714 4.5110 23 6 2.1489 0.3748 4.7445 24 7 2.4486 0.1586 6.0192 25 6 2.9915 -0.9712 6.4201 26 6 3.2786 -1.9935 5.5299 27 6 2.9876 -1.8242 4.1878 28 6 2.4069 -0.6223 3.7897 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.6870 -1.0406 -3.3642 33 1 2.0086 -1.3367 -3.8775 34 1 1.8947 0.9533 -4.8227 35 1 3.5731 1.2487 -4.3089 36 1 3.4819 2.4511 -7.7888 37 1 1.0716 1.8683 2.0257 38 1 3.2187 -1.1046 7.4675 39 1 3.7247 -2.9127 5.8800 40 1 3.1996 -2.6034 3.4706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:17:10 Heat of formation + Delta-G solvation = -59.442912 kcal Electronic energy + Delta-G solvation = -24898.191429 eV Core-core repulsion = 21064.746544 eV Total energy + Delta-G solvation = -3833.444885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.16634 -40.33937 -38.97379 -38.21969 -36.13191 -33.59810 -33.41481 -32.48901 -31.08113 -30.63028 -29.58650 -26.20066 -25.35161 -24.22922 -23.25742 -22.92891 -21.70562 -19.79714 -19.29930 -18.58083 -17.64610 -17.22607 -16.52103 -16.20600 -16.04052 -15.97106 -15.63417 -15.35401 -14.91855 -14.50661 -14.46420 -14.22099 -13.69663 -13.39593 -13.25283 -12.93798 -12.77951 -12.60056 -12.32475 -12.30286 -12.14497 -11.60187 -11.20507 -10.93631 -10.75991 -10.68530 -10.60687 -10.06460 -10.03622 -9.96144 -9.66184 -9.44167 -9.18503 -9.01581 -8.58013 -8.37061 -6.01317 -4.05937 0.32724 0.85499 1.34440 2.15362 2.72260 2.81675 2.90369 3.33858 3.38157 3.40630 3.50928 3.88738 4.05877 4.15126 4.40365 4.45025 4.54281 4.74264 4.81502 4.86042 4.94489 5.00884 5.16383 5.34167 5.38401 5.42503 5.58655 5.67928 5.80332 5.87958 5.93889 5.99936 6.14069 6.22222 6.39063 6.61073 6.64039 6.90503 7.47348 7.53357 7.66269 7.73177 7.97990 8.23482 8.39295 9.00848 9.58049 11.09666 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.002245 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.242958 B =12471.935711 C =12860.499993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.040 3.960 3 H 0.107 0.893 4 O -0.341 6.341 5 C 0.457 3.543 6 O -0.506 6.506 7 C -0.103 4.103 8 C 0.034 3.966 9 C -0.529 4.529 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.427 3.573 18 O -0.439 6.439 19 C -0.254 4.254 20 C 0.148 3.852 21 N -0.558 5.558 22 H 0.427 0.573 23 C 0.271 3.729 24 N -0.494 5.494 25 C 0.134 3.866 26 C -0.190 4.190 27 C -0.024 4.024 28 C -0.104 4.104 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.262 0.738 37 H 0.197 0.803 38 H 0.164 0.836 39 H 0.142 0.858 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 -3.183 27.352 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 H 0.125 0.875 4 O -0.258 6.258 5 C 0.301 3.699 6 O -0.393 6.393 7 C -0.141 4.141 8 C -0.003 4.003 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.529 5.529 13 Si 0.724 3.276 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.201 1.201 17 C 0.304 3.696 18 O -0.313 6.313 19 C -0.263 4.263 20 C 0.013 3.987 21 N -0.161 5.161 22 H 0.266 0.734 23 C 0.040 3.960 24 N -0.207 5.207 25 C -0.031 4.031 26 C -0.211 4.211 27 C -0.050 4.050 28 C -0.110 4.110 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.214 0.786 38 H 0.181 0.819 39 H 0.160 0.840 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.222 -2.450 27.864 28.455 hybrid contribution 0.279 -0.259 -1.206 1.265 sum -4.943 -2.709 26.657 27.247 Atomic orbital electron populations 1.22110 0.92111 1.03989 1.03756 1.22875 0.96204 0.98403 0.84167 0.87547 1.86749 1.77330 1.42141 1.19609 1.24916 0.73537 0.86379 0.85047 1.90605 1.47970 1.16909 1.83815 1.21792 1.01937 1.02027 0.88342 1.19016 0.98521 0.92426 0.90333 1.21127 1.45127 0.94714 0.95699 0.92314 1.25016 0.95480 0.94827 0.98999 1.69978 1.48348 1.04992 1.29565 0.86596 0.79429 0.78917 0.82684 1.20142 1.21283 1.20147 1.19918 0.75738 0.86746 0.87153 1.90559 1.34357 1.18474 1.87948 1.19677 1.15829 0.96781 0.94042 1.22900 0.95271 0.96335 0.84167 1.41367 1.52078 1.16008 1.06686 0.73412 1.18365 0.99593 0.88093 0.89976 1.66494 1.15242 1.24452 1.14469 1.22491 0.93451 0.87041 1.00104 1.22030 1.04141 1.01348 0.93609 1.21182 0.92390 0.95406 0.96029 1.19494 1.03334 0.95515 0.92672 0.90681 0.90320 0.90940 0.88803 0.88788 0.95578 0.95602 0.92813 0.78610 0.81893 0.84019 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.46 37.16 0.35 -1.36 16 2 C 0.04 0.54 2.36 -27.88 -0.07 0.47 16 3 H 0.11 1.33 6.87 -51.93 -0.36 0.98 16 4 O -0.34 -5.91 9.46 -45.76 -0.43 -6.35 16 5 C 0.46 8.97 7.93 36.01 0.29 9.26 16 6 O -0.51 -10.92 15.20 -18.75 -0.28 -11.21 16 7 C -0.10 -2.15 5.75 -27.88 -0.16 -2.31 16 8 C 0.03 0.90 4.26 -27.88 -0.12 0.78 16 9 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 13 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 C 0.43 5.70 6.27 -32.97 -0.21 5.49 16 18 O -0.44 -7.24 16.28 -13.70 -0.22 -7.47 16 19 C -0.25 -2.75 6.06 -104.93 -0.64 -3.38 16 20 C 0.15 1.04 10.53 -16.16 -0.17 0.87 16 21 N -0.56 -3.82 5.95 -11.67 -0.07 -3.89 16 22 H 0.43 1.57 8.96 -40.82 -0.37 1.20 16 23 C 0.27 2.74 8.40 -155.46 -1.31 1.43 16 24 N -0.49 -4.94 10.39 -12.29 -0.13 -5.07 16 25 C 0.13 1.05 11.14 -17.53 -0.20 0.86 16 26 C -0.19 -1.48 10.11 -39.41 -0.40 -1.88 16 27 C -0.02 -0.24 9.91 -39.14 -0.39 -0.63 16 28 C -0.10 -1.18 6.24 -104.90 -0.66 -1.83 16 29 H 0.07 0.52 7.08 -51.93 -0.37 0.16 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 33 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.20 0.66 7.45 -52.49 -0.39 0.27 16 38 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 40 H 0.15 1.53 7.47 -52.49 -0.39 1.14 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -36.93 353.19 -8.97 -45.89 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.79 Total: -1.77 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -4.07 Total: -5.76 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.54 Total: -35.14 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.94 Total: -25.02 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.93 -8.97 -45.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.549 kcal (2) G-P(sol) polarization free energy of solvation -36.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds