Wall clock time and date at job start Fri Apr 10 2020 23:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46818 * 2 1 4 4 O 1.45198 * 109.46946 * 240.00555 * 2 1 3 5 5 C 1.34230 * 117.00173 * 89.99709 * 4 2 1 6 6 O 1.20822 * 120.00010 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99763 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46925 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47300 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47086 * 59.99960 * 13 11 9 15 15 H 1.48503 * 109.47151 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46879 * 299.99904 * 13 11 9 17 17 C 1.50693 * 109.47132 * 120.00509 * 2 1 3 18 18 O 1.21396 * 120.00499 * 105.00277 * 17 2 1 19 19 C 1.41759 * 120.00058 * 284.99501 * 17 2 1 20 20 C 1.37837 * 126.94175 * 0.03267 * 19 17 2 21 21 N 1.35311 * 109.50980 * 179.97438 * 20 19 17 22 22 H 0.97001 * 124.62133 * 179.97438 * 21 20 19 23 23 C 1.37760 * 110.74619 * 359.97438 * 21 20 19 24 24 N 1.32711 * 132.74267 * 180.02562 * 23 21 20 25 25 C 1.31604 * 121.71009 * 179.97438 * 24 23 21 26 26 C 1.38563 * 121.54199 * 0.02562 * 25 24 23 27 27 C 1.38373 * 119.29390 * 359.97438 * 26 25 24 28 28 C 1.39290 * 118.06404 * 359.69651 * 27 26 25 29 29 H 1.08999 * 109.47111 * 299.99632 * 1 2 3 30 30 H 1.08999 * 109.47362 * 59.99353 * 1 2 3 31 31 H 1.08995 * 109.46990 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47318 * 299.99486 * 7 5 4 33 33 H 1.09000 * 109.47161 * 60.00117 * 7 5 4 34 34 H 1.09004 * 109.46930 * 299.99901 * 8 7 5 35 35 H 1.09004 * 109.47059 * 59.99503 * 8 7 5 36 36 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 37 37 H 1.08002 * 125.24310 * 359.97055 * 20 19 17 38 38 H 1.08002 * 119.22828 * 180.02562 * 25 24 23 39 39 H 1.08003 * 120.35201 * 179.97438 * 26 25 24 40 40 H 1.08001 * 120.96561 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2170 0.0642 -2.2811 6 8 1.9972 1.2519 -2.2506 7 6 2.7181 -0.5770 -3.5496 8 6 2.8634 0.4893 -4.6372 9 6 3.3638 -0.1519 -5.9058 10 1 3.5584 -1.2139 -5.9337 11 6 3.5723 0.6169 -7.0311 12 7 3.3349 1.9100 -6.9972 13 14 4.1920 -0.1780 -8.6038 14 1 3.2243 -1.2123 -9.0502 15 1 4.3331 0.8570 -9.6594 16 1 5.5117 -0.8106 -8.3520 17 6 2.0323 -0.7105 1.2303 18 8 2.4913 -1.8307 1.1396 19 6 1.9691 -0.0707 2.4938 20 6 1.4792 1.1898 2.7604 21 7 1.5878 1.4460 4.0846 22 1 1.3087 2.2714 4.5110 23 6 2.1489 0.3748 4.7445 24 7 2.4486 0.1586 6.0192 25 6 2.9915 -0.9712 6.4201 26 6 3.2786 -1.9935 5.5299 27 6 2.9876 -1.8242 4.1878 28 6 2.4069 -0.6223 3.7897 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.6870 -1.0406 -3.3642 33 1 2.0086 -1.3367 -3.8775 34 1 1.8947 0.9533 -4.8227 35 1 3.5731 1.2487 -4.3089 36 1 3.4819 2.4511 -7.7888 37 1 1.0716 1.8683 2.0257 38 1 3.2187 -1.1046 7.4675 39 1 3.7247 -2.9127 5.8800 40 1 3.1996 -2.6034 3.4706 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:17:10 Heat of formation + Delta-G solvation = -81.966392 kcal Electronic energy + Delta-G solvation = -24899.168121 eV Core-core repulsion = 21064.746544 eV Total energy + Delta-G solvation = -3834.421577 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.85959 -41.71052 -40.08839 -38.91400 -37.57461 -35.63968 -34.19986 -33.58315 -32.90819 -31.34946 -30.32913 -28.09100 -26.35667 -24.90418 -24.67144 -23.58190 -23.16543 -21.37664 -20.13666 -19.42328 -19.10208 -18.40131 -17.85012 -17.38744 -17.27688 -16.93720 -16.48374 -16.46179 -16.31161 -15.82306 -15.58130 -15.37169 -14.77897 -14.44115 -14.27279 -14.18860 -13.95180 -13.78243 -13.42381 -13.33176 -13.23118 -13.01209 -12.80864 -12.66275 -12.54040 -12.00273 -11.89191 -11.73341 -11.50210 -11.46640 -11.29668 -10.89804 -10.55898 -10.39167 -9.66737 -9.29235 -8.19309 -6.32547 -0.38277 0.16435 0.57281 1.21060 1.43167 1.47701 1.51704 1.55815 1.60663 1.98598 2.43543 2.82173 2.93125 3.14275 3.42102 3.53954 3.73907 3.78278 3.92179 3.93543 3.96534 4.08950 4.29099 4.40959 4.43508 4.44224 4.57806 4.66114 4.71656 4.79071 4.93457 5.08410 5.13585 5.21194 5.29377 5.36260 5.47799 5.56810 5.74473 5.81266 6.12750 6.14689 6.52360 6.77975 6.86165 6.87704 7.37191 8.92901 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.002245 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.242958 B =12471.935711 C =12860.499993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.030 3.970 3 H 0.118 0.882 4 O -0.347 6.347 5 C 0.467 3.533 6 O -0.531 6.531 7 C -0.098 4.098 8 C 0.042 3.958 9 C -0.547 4.547 10 H 0.074 0.926 11 C -0.002 4.002 12 N -0.933 5.933 13 Si 0.972 3.028 14 H -0.263 1.263 15 H -0.286 1.286 16 H -0.265 1.265 17 C 0.434 3.566 18 O -0.489 6.489 19 C -0.299 4.299 20 C 0.191 3.809 21 N -0.540 5.540 22 H 0.444 0.556 23 C 0.253 3.747 24 N -0.507 5.507 25 C 0.130 3.870 26 C -0.177 4.177 27 C -0.054 4.054 28 C -0.128 4.128 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.114 0.886 34 H -0.005 1.005 35 H -0.008 1.008 36 H 0.264 0.736 37 H 0.239 0.761 38 H 0.199 0.801 39 H 0.171 0.829 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.513 -3.360 28.744 29.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.025 4.025 3 H 0.136 0.864 4 O -0.264 6.264 5 C 0.312 3.688 6 O -0.421 6.421 7 C -0.135 4.135 8 C 0.005 3.995 9 C -0.584 4.584 10 H 0.092 0.908 11 C -0.200 4.200 12 N -0.573 5.573 13 Si 0.796 3.204 14 H -0.188 1.188 15 H -0.211 1.211 16 H -0.190 1.190 17 C 0.315 3.685 18 O -0.367 6.367 19 C -0.308 4.308 20 C 0.053 3.947 21 N -0.145 5.145 22 H 0.287 0.713 23 C 0.022 3.978 24 N -0.220 5.220 25 C -0.035 4.035 26 C -0.198 4.198 27 C -0.080 4.080 28 C -0.133 4.133 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.073 0.927 37 H 0.255 0.745 38 H 0.216 0.784 39 H 0.188 0.812 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.586 -2.629 29.312 29.955 hybrid contribution 0.364 -0.160 -1.442 1.496 sum -5.222 -2.789 27.870 28.492 Atomic orbital electron populations 1.22141 0.89740 1.04241 1.05314 1.23348 0.98151 0.98545 0.82472 0.86440 1.86688 1.77167 1.42301 1.20218 1.24453 0.73071 0.85802 0.85448 1.90589 1.49218 1.17851 1.84403 1.21535 1.03573 1.00601 0.87797 1.18775 0.95720 0.93005 0.92031 1.21609 1.44827 0.95582 0.96424 0.90813 1.26055 0.95565 0.95318 1.03068 1.70134 1.49636 1.06765 1.30753 0.85394 0.79287 0.78006 0.77702 1.18799 1.21131 1.18966 1.20076 0.74455 0.86066 0.87858 1.90541 1.37264 1.20414 1.88483 1.19501 1.19590 0.98760 0.92906 1.23477 0.91590 0.94989 0.84600 1.41428 1.50629 1.15951 1.06503 0.71315 1.18566 1.00444 0.88793 0.90007 1.66592 1.15676 1.25408 1.14314 1.23143 0.92370 0.86283 1.01699 1.22367 1.02586 1.02392 0.92431 1.21305 0.94078 0.95471 0.97180 1.19786 1.03871 0.96300 0.93388 0.86497 0.91271 0.91401 0.87303 0.86821 0.98650 0.98942 0.92701 0.74487 0.78397 0.81163 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.46 71.98 0.68 -2.40 16 2 C 0.03 0.80 2.36 29.85 0.07 0.87 16 3 H 0.12 2.80 6.87 -2.39 -0.02 2.79 16 4 O -0.35 -12.09 9.46 -45.19 -0.43 -12.52 16 5 C 0.47 18.54 7.93 71.24 0.56 19.10 16 6 O -0.53 -23.33 15.20 21.98 0.33 -22.99 16 7 C -0.10 -4.08 5.75 29.85 0.17 -3.91 16 8 C 0.04 2.27 4.26 29.85 0.13 2.40 16 9 C -0.55 -30.82 9.11 25.60 0.23 -30.58 16 10 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 11 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 12 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 13 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 14 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 15 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 16 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 17 C 0.43 11.68 6.27 26.55 0.17 11.85 16 18 O -0.49 -16.93 16.28 14.93 0.24 -16.68 16 19 C -0.30 -6.24 6.06 -20.06 -0.12 -6.36 16 20 C 0.19 2.14 10.53 84.06 0.88 3.02 16 21 N -0.54 -5.98 5.95 -190.84 -1.14 -7.11 16 22 H 0.44 1.82 8.96 -92.71 -0.83 0.99 16 23 C 0.25 4.75 8.40 133.71 1.12 5.87 16 24 N -0.51 -9.27 10.39 -192.79 -2.00 -11.27 16 25 C 0.13 1.77 11.14 84.80 0.95 2.72 16 26 C -0.18 -2.55 10.11 22.38 0.23 -2.32 16 27 C -0.05 -1.14 9.91 22.56 0.22 -0.92 16 28 C -0.13 -2.87 6.24 -20.05 -0.13 -2.99 16 29 H 0.12 1.25 7.08 -2.39 -0.02 1.24 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 33 H 0.11 4.28 8.14 -2.39 -0.02 4.26 16 34 H 0.00 -0.29 8.10 -2.38 -0.02 -0.31 16 35 H -0.01 -0.47 8.10 -2.39 -0.02 -0.49 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.24 0.51 7.45 -2.91 -0.02 0.49 16 38 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.13 3.04 7.47 -2.91 -0.02 3.02 16 Total: -1.00 -84.05 353.19 5.21 -78.84 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 0.26 Total: 6.44 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.63 Total: -3.32 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.85 Total: -75.74 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: 0.15 Total: -52.20 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -84.05 5.21 -78.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.130 kcal (2) G-P(sol) polarization free energy of solvation -84.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds