Wall clock time and date at job start Fri Apr 10 2020 23:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47360 * 2 1 4 4 O 1.45198 * 109.47092 * 119.99652 * 2 1 3 5 5 C 1.34230 * 117.00173 * 269.99889 * 4 2 1 6 6 O 1.20822 * 120.00010 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99763 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46925 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47300 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46692 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47025 * 120.00050 * 13 11 9 16 16 H 1.48500 * 109.46740 * 240.00408 * 13 11 9 17 17 C 1.50695 * 109.47446 * 239.99767 * 2 1 3 18 18 N 1.30976 * 126.44215 * 104.99602 * 17 2 1 19 19 C 1.35219 * 105.58444 * 179.97438 * 18 17 2 20 20 C 1.48415 * 126.41616 * 180.02562 * 19 18 17 21 21 C 1.39329 * 120.11984 * 359.72511 * 20 19 18 22 22 C 1.38020 * 119.87985 * 179.76780 * 21 20 19 23 23 C 1.38330 * 120.11912 * 0.50923 * 22 21 20 24 24 C 1.38318 * 120.23723 * 359.74544 * 23 22 21 25 25 C 1.38018 * 120.12298 * 359.97438 * 24 23 22 26 26 N 1.30760 * 107.16802 * 0.02562 * 19 18 17 27 27 O 1.21294 * 110.09852 * 359.74354 * 26 19 18 28 28 H 1.08997 * 109.47524 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47267 * 300.00601 * 1 2 3 30 30 H 1.08999 * 109.46927 * 60.00161 * 1 2 3 31 31 H 1.09000 * 109.47318 * 299.99486 * 7 5 4 32 32 H 1.09000 * 109.47161 * 60.00117 * 7 5 4 33 33 H 1.09004 * 109.46930 * 299.99901 * 8 7 5 34 34 H 1.09004 * 109.47059 * 59.99503 * 8 7 5 35 35 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 36 36 H 1.07996 * 120.05981 * 0.02562 * 21 20 19 37 37 H 1.08003 * 119.94332 * 180.27205 * 22 21 20 38 38 H 1.07994 * 119.87999 * 179.76491 * 23 22 21 39 39 H 1.08004 * 119.93393 * 180.02562 * 24 23 22 40 40 H 1.07999 * 120.05855 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 1.1856 5 6 2.2171 0.0641 2.2811 6 8 1.9982 1.2520 2.2503 7 6 2.7193 -0.5769 3.5492 8 6 2.8632 0.4891 4.6372 9 6 3.3660 -0.1517 5.9051 10 1 3.5635 -1.2132 5.9320 11 6 3.5748 0.6171 7.0303 12 7 3.3347 1.9097 6.9974 13 14 4.1987 -0.1771 8.6017 14 1 4.3898 -1.6328 8.3784 15 1 5.4941 0.4383 8.9869 16 1 3.2087 0.0317 9.6887 17 6 2.0323 -0.7104 -1.2304 18 7 2.5487 -0.1504 -2.2958 19 6 2.8531 -1.1696 -3.1306 20 6 3.4658 -1.0524 -4.4773 21 6 3.7791 0.2021 -4.9962 22 6 4.3532 0.3050 -6.2471 23 6 4.6078 -0.8339 -6.9898 24 6 4.2939 -2.0815 -6.4817 25 6 3.7249 -2.1962 -5.2295 26 7 2.5065 -2.2777 -2.5293 27 8 2.0390 -2.0309 -1.4376 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.0104 -1.3371 3.8775 32 1 3.6884 -1.0399 3.3632 33 1 3.5719 1.2496 4.3092 34 1 1.8939 0.9518 4.8231 35 1 3.4812 2.4507 7.7891 36 1 3.5770 1.0921 -4.4189 37 1 4.6005 1.2767 -6.6485 38 1 5.0536 -0.7486 -7.9697 39 1 4.4952 -2.9675 -7.0656 40 1 3.4806 -3.1709 -4.8336 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812619132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:17:40 Heat of formation + Delta-G solvation = -0.367194 kcal Electronic energy + Delta-G solvation = -24498.231622 eV Core-core repulsion = 20667.348452 eV Total energy + Delta-G solvation = -3830.883170 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.82164 -40.35798 -39.53276 -36.85703 -36.11354 -33.92697 -33.63468 -31.77697 -31.38883 -31.08021 -30.41475 -26.31411 -25.22491 -25.09361 -23.40406 -22.53321 -22.34923 -20.94703 -19.94126 -18.47045 -18.24635 -17.55465 -17.02612 -16.52434 -16.11676 -16.02886 -15.89546 -15.10103 -14.50887 -14.49829 -14.17434 -13.88695 -13.83950 -13.54486 -13.31944 -12.89961 -12.64907 -12.40759 -12.24946 -12.07550 -11.85779 -11.73334 -11.59290 -11.30452 -11.22020 -11.01901 -10.94111 -10.66878 -10.55348 -10.12368 -10.09686 -9.65978 -9.39768 -9.21538 -9.06122 -8.41972 -6.05597 -4.10610 0.32558 0.93525 0.96153 2.08091 2.35093 2.59951 2.64911 3.27232 3.28848 3.36569 3.40059 3.42461 3.73025 4.38526 4.41336 4.53229 4.55115 4.61036 4.69863 4.80602 4.97018 5.07722 5.11940 5.19557 5.30242 5.39482 5.44892 5.50517 5.60184 5.63184 5.84183 5.99176 6.03049 6.04764 6.06002 6.10100 6.41831 6.46352 6.75350 7.61271 7.66448 7.82128 7.92785 8.06589 8.29881 8.96459 9.53927 11.05355 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025027 B = 0.002099 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.514131 B =13338.637235 C =13548.646178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.177 3.823 3 H 0.132 0.868 4 O -0.355 6.355 5 C 0.462 3.538 6 O -0.496 6.496 7 C -0.102 4.102 8 C 0.032 3.968 9 C -0.529 4.529 10 H 0.060 0.940 11 C 0.059 3.941 12 N -0.889 5.889 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.198 3.802 18 N -0.463 5.463 19 C 0.210 3.790 20 C -0.021 4.021 21 C -0.075 4.075 22 C -0.123 4.123 23 C -0.102 4.102 24 C -0.123 4.123 25 C -0.083 4.083 26 N -0.373 5.373 27 O 0.102 5.898 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.027 0.973 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 -6.306 -26.854 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.120 3.880 3 H 0.149 0.851 4 O -0.273 6.273 5 C 0.305 3.695 6 O -0.381 6.381 7 C -0.139 4.139 8 C -0.005 4.005 9 C -0.567 4.567 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.527 5.527 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.023 4.023 18 N -0.197 5.197 19 C -0.059 4.059 20 C -0.023 4.023 21 C -0.095 4.095 22 C -0.141 4.141 23 C -0.120 4.120 24 C -0.141 4.141 25 C -0.103 4.103 26 N -0.077 5.077 27 O 0.039 5.961 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.914 -6.235 -27.349 28.116 hybrid contribution 0.285 -0.210 0.981 1.043 sum -1.630 -6.446 -26.368 27.193 Atomic orbital electron populations 1.22242 0.90956 1.04471 1.04813 1.20740 0.95376 0.95393 0.76497 0.85089 1.86715 1.77883 1.42948 1.19768 1.24994 0.73564 0.86420 0.84482 1.90658 1.47329 1.16679 1.83404 1.21850 1.01971 1.02197 0.87895 1.19055 0.98708 0.92413 0.90309 1.21174 1.45062 0.94822 0.95653 0.92180 1.25020 0.95445 0.94823 0.99046 1.69995 1.48267 1.05026 1.29421 0.86479 0.78505 0.79515 0.83158 1.19626 1.20968 1.20940 1.28300 0.95663 0.81270 0.97104 1.71954 1.15914 1.30099 1.01782 1.23914 1.00781 0.83772 0.97476 1.17351 1.01852 0.94861 0.88250 1.21269 0.96013 0.96648 0.95531 1.21157 0.99441 0.99163 0.94315 1.21370 0.98281 0.92520 0.99875 1.21098 0.99491 0.98071 0.95423 1.21200 0.97128 0.97841 0.94169 1.74896 1.15266 1.23066 0.94467 1.85341 1.57668 1.26530 1.26531 0.90456 0.89224 0.90025 0.88475 0.88657 0.95494 0.95407 0.92853 0.84535 0.85084 0.85440 0.85185 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.53 37.15 0.35 -1.35 16 2 C 0.18 2.30 3.12 -27.89 -0.09 2.21 16 3 H 0.13 1.76 7.16 -51.93 -0.37 1.39 16 4 O -0.36 -5.42 9.86 -40.25 -0.40 -5.81 16 5 C 0.46 8.36 7.93 36.01 0.29 8.65 16 6 O -0.50 -10.25 15.20 -18.75 -0.28 -10.53 16 7 C -0.10 -1.96 5.75 -27.88 -0.16 -2.12 16 8 C 0.03 0.82 4.26 -27.88 -0.12 0.70 16 9 C -0.53 -14.40 9.11 -34.44 -0.31 -14.72 16 10 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 13 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 C 0.20 2.63 7.39 -12.99 -0.10 2.54 16 18 N -0.46 -6.37 11.26 -9.88 -0.11 -6.48 16 19 C 0.21 2.81 7.80 -156.12 -1.22 1.59 16 20 C -0.02 -0.24 5.88 -104.89 -0.62 -0.86 16 21 C -0.07 -0.72 9.70 -39.26 -0.38 -1.10 16 22 C -0.12 -0.90 10.03 -39.63 -0.40 -1.30 16 23 C -0.10 -0.67 10.04 -39.52 -0.40 -1.07 16 24 C -0.12 -0.89 10.03 -39.63 -0.40 -1.29 16 25 C -0.08 -0.79 9.69 -39.26 -0.38 -1.17 16 26 N -0.37 -5.17 11.86 30.97 0.37 -4.81 16 27 O 0.10 1.40 11.29 18.02 0.20 1.60 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.03 0.76 8.10 -51.93 -0.42 0.33 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.14 1.29 7.88 -52.49 -0.41 0.88 16 37 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 40 H 0.13 1.19 7.87 -52.49 -0.41 0.78 16 LS Contribution 359.38 15.07 5.42 5.42 Total: -1.00 -32.18 359.38 -8.08 -40.25 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.96 Total: -2.29 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -4.02 Total: -7.72 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.99 Total: -37.01 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.48 Total: -14.75 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.18 -8.08 -40.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.887 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds