Wall clock time and date at job start Fri Apr 10 2020 23:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47360 * 2 1 4 4 O 1.45198 * 109.47092 * 119.99652 * 2 1 3 5 5 C 1.34230 * 117.00173 * 269.99889 * 4 2 1 6 6 O 1.20822 * 120.00010 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99763 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46925 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47300 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46692 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47025 * 120.00050 * 13 11 9 16 16 H 1.48500 * 109.46740 * 240.00408 * 13 11 9 17 17 C 1.50695 * 109.47446 * 239.99767 * 2 1 3 18 18 N 1.30976 * 126.44215 * 104.99602 * 17 2 1 19 19 C 1.35219 * 105.58444 * 179.97438 * 18 17 2 20 20 C 1.48415 * 126.41616 * 180.02562 * 19 18 17 21 21 C 1.39329 * 120.11984 * 359.72511 * 20 19 18 22 22 C 1.38020 * 119.87985 * 179.76780 * 21 20 19 23 23 C 1.38330 * 120.11912 * 0.50923 * 22 21 20 24 24 C 1.38318 * 120.23723 * 359.74544 * 23 22 21 25 25 C 1.38018 * 120.12298 * 359.97438 * 24 23 22 26 26 N 1.30760 * 107.16802 * 0.02562 * 19 18 17 27 27 O 1.21294 * 110.09852 * 359.74354 * 26 19 18 28 28 H 1.08997 * 109.47524 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47267 * 300.00601 * 1 2 3 30 30 H 1.08999 * 109.46927 * 60.00161 * 1 2 3 31 31 H 1.09000 * 109.47318 * 299.99486 * 7 5 4 32 32 H 1.09000 * 109.47161 * 60.00117 * 7 5 4 33 33 H 1.09004 * 109.46930 * 299.99901 * 8 7 5 34 34 H 1.09004 * 109.47059 * 59.99503 * 8 7 5 35 35 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 36 36 H 1.07996 * 120.05981 * 0.02562 * 21 20 19 37 37 H 1.08003 * 119.94332 * 180.27205 * 22 21 20 38 38 H 1.07994 * 119.87999 * 179.76491 * 23 22 21 39 39 H 1.08004 * 119.93393 * 180.02562 * 24 23 22 40 40 H 1.07999 * 120.05855 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 1.1856 5 6 2.2171 0.0641 2.2811 6 8 1.9982 1.2520 2.2503 7 6 2.7193 -0.5769 3.5492 8 6 2.8632 0.4891 4.6372 9 6 3.3660 -0.1517 5.9051 10 1 3.5635 -1.2132 5.9320 11 6 3.5748 0.6171 7.0303 12 7 3.3347 1.9097 6.9974 13 14 4.1987 -0.1771 8.6017 14 1 4.3898 -1.6328 8.3784 15 1 5.4941 0.4383 8.9869 16 1 3.2087 0.0317 9.6887 17 6 2.0323 -0.7104 -1.2304 18 7 2.5487 -0.1504 -2.2958 19 6 2.8531 -1.1696 -3.1306 20 6 3.4658 -1.0524 -4.4773 21 6 3.7791 0.2021 -4.9962 22 6 4.3532 0.3050 -6.2471 23 6 4.6078 -0.8339 -6.9898 24 6 4.2939 -2.0815 -6.4817 25 6 3.7249 -2.1962 -5.2295 26 7 2.5065 -2.2777 -2.5293 27 8 2.0390 -2.0309 -1.4376 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.0104 -1.3371 3.8775 32 1 3.6884 -1.0399 3.3632 33 1 3.5719 1.2496 4.3092 34 1 1.8939 0.9518 4.8231 35 1 3.4812 2.4507 7.7891 36 1 3.5770 1.0921 -4.4189 37 1 4.6005 1.2767 -6.6485 38 1 5.0536 -0.7486 -7.9697 39 1 4.4952 -2.9675 -7.0656 40 1 3.4806 -3.1709 -4.8336 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812619132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:17:39 Heat of formation + Delta-G solvation = -18.925130 kcal Electronic energy + Delta-G solvation = -24499.036355 eV Core-core repulsion = 20667.348452 eV Total energy + Delta-G solvation = -3831.687902 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.85824 -41.76568 -40.17474 -38.22695 -37.13560 -35.65044 -34.96309 -33.20244 -32.40341 -32.00862 -31.31585 -28.13389 -26.34770 -25.98390 -24.63473 -23.70444 -23.23948 -22.06672 -21.38072 -19.52229 -19.27991 -19.12542 -18.11424 -17.76126 -17.58670 -17.38218 -16.60095 -16.46372 -16.03145 -15.58215 -15.30400 -14.78883 -14.60564 -14.44091 -14.29383 -14.27766 -14.14262 -13.88037 -13.37888 -13.23243 -13.01026 -12.86809 -12.73992 -12.49296 -12.47347 -12.39577 -12.18687 -12.02352 -11.98749 -11.75598 -11.60985 -11.46494 -11.24880 -10.57127 -10.01485 -9.78210 -8.19107 -6.32007 -0.52697 -0.02331 0.34855 1.06913 1.16297 1.30780 1.44728 1.45067 1.50194 1.58876 2.30360 2.44195 2.71374 2.77729 3.15247 3.43994 3.58262 3.70342 3.89196 3.95171 3.96230 4.10509 4.25051 4.39033 4.43786 4.45886 4.46263 4.54684 4.58104 4.62176 4.84301 4.90152 5.00911 5.01984 5.19682 5.36733 5.41365 5.46649 5.49347 5.57652 5.82410 5.89046 6.14343 6.65476 6.79703 6.86636 7.38119 8.93471 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025027 B = 0.002099 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.514131 B =13338.637235 C =13548.646178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.177 3.823 3 H 0.126 0.874 4 O -0.347 6.347 5 C 0.474 3.526 6 O -0.527 6.527 7 C -0.094 4.094 8 C 0.037 3.963 9 C -0.542 4.542 10 H 0.077 0.923 11 C -0.004 4.004 12 N -0.934 5.934 13 Si 0.971 3.029 14 H -0.255 1.255 15 H -0.282 1.282 16 H -0.280 1.280 17 C 0.199 3.801 18 N -0.475 5.475 19 C 0.210 3.790 20 C -0.054 4.054 21 C -0.088 4.088 22 C -0.122 4.122 23 C -0.092 4.092 24 C -0.121 4.121 25 C -0.094 4.094 26 N -0.387 5.387 27 O 0.095 5.905 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.115 0.885 33 H -0.009 1.009 34 H -0.004 1.004 35 H 0.263 0.737 36 H 0.130 0.870 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 -7.969 -28.559 29.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.120 3.880 3 H 0.143 0.857 4 O -0.264 6.264 5 C 0.319 3.681 6 O -0.415 6.415 7 C -0.131 4.131 8 C 0.000 4.000 9 C -0.580 4.580 10 H 0.095 0.905 11 C -0.201 4.201 12 N -0.574 5.574 13 Si 0.796 3.204 14 H -0.178 1.178 15 H -0.208 1.208 16 H -0.206 1.206 17 C -0.023 4.023 18 N -0.209 5.209 19 C -0.059 4.059 20 C -0.056 4.056 21 C -0.108 4.108 22 C -0.140 4.140 23 C -0.111 4.111 24 C -0.139 4.139 25 C -0.114 4.114 26 N -0.093 5.093 27 O 0.035 5.965 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.010 0.990 34 H 0.015 0.985 35 H 0.072 0.928 36 H 0.148 0.852 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.287 -7.936 -29.065 30.156 hybrid contribution 0.112 0.326 1.316 1.360 sum -1.174 -7.610 -27.749 28.798 Atomic orbital electron populations 1.22263 0.88572 1.05569 1.05541 1.20973 0.97134 0.94674 0.75246 0.85689 1.86642 1.77616 1.42377 1.19808 1.24573 0.72884 0.85739 0.84928 1.90657 1.48796 1.18006 1.84058 1.21585 1.03974 1.00609 0.86937 1.18828 0.95854 0.93158 0.92162 1.21672 1.44345 0.95709 0.96292 0.90492 1.26054 0.95691 0.95298 1.03101 1.70149 1.49813 1.06848 1.30597 0.85303 0.77626 0.79229 0.78285 1.17800 1.20812 1.20614 1.28298 0.95562 0.81303 0.97087 1.71962 1.16268 1.30548 1.02159 1.24408 1.00018 0.83335 0.98187 1.17583 1.03877 0.96235 0.87883 1.21357 0.96865 0.95849 0.96687 1.21494 0.98337 1.00870 0.93297 1.21812 0.96659 0.91726 1.00883 1.21458 0.98237 0.99642 0.94532 1.21317 0.97787 0.97161 0.95161 1.74874 1.16287 1.23408 0.94689 1.85316 1.57979 1.26521 1.26710 0.89182 0.89712 0.88021 0.85939 0.86715 0.99031 0.98523 0.92778 0.85245 0.82609 0.82058 0.82484 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.53 71.98 0.69 -2.49 16 2 C 0.18 4.56 3.12 29.84 0.09 4.65 16 3 H 0.13 3.43 7.16 -2.38 -0.02 3.42 16 4 O -0.35 -10.42 9.86 -50.46 -0.50 -10.92 16 5 C 0.47 17.22 7.93 71.24 0.56 17.78 16 6 O -0.53 -22.45 15.20 21.98 0.33 -22.12 16 7 C -0.09 -3.57 5.75 29.85 0.17 -3.40 16 8 C 0.04 1.94 4.26 29.85 0.13 2.06 16 9 C -0.54 -29.55 9.11 25.60 0.23 -29.32 16 10 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 11 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 12 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 13 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 14 H -0.25 -10.51 7.11 99.48 0.71 -9.81 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 C 0.20 5.30 7.39 88.35 0.65 5.95 16 18 N -0.47 -13.26 11.26 -302.51 -3.41 -16.66 16 19 C 0.21 5.70 7.80 137.29 1.07 6.77 16 20 C -0.05 -1.21 5.88 -20.04 -0.12 -1.32 16 21 C -0.09 -1.64 9.70 22.48 0.22 -1.43 16 22 C -0.12 -1.52 10.03 22.24 0.22 -1.30 16 23 C -0.09 -0.91 10.04 22.31 0.22 -0.69 16 24 C -0.12 -1.45 10.03 22.24 0.22 -1.22 16 25 C -0.09 -1.71 9.69 22.48 0.22 -1.50 16 26 N -0.39 -10.85 11.86 -59.13 -0.70 -11.56 16 27 O 0.09 2.61 11.29 74.65 0.84 3.45 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 32 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 33 H -0.01 -0.51 8.10 -2.38 -0.02 -0.53 16 34 H 0.00 -0.21 8.10 -2.39 -0.02 -0.23 16 35 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.13 2.50 7.88 -2.91 -0.02 2.47 16 37 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 38 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 39 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 40 H 0.13 2.30 7.87 -2.91 -0.02 2.28 16 Total: -1.00 -71.66 359.38 4.99 -66.67 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.06 Total: 7.85 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.05 Total: -5.17 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -3.82 Total: -84.99 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: 0.68 Total: -29.59 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.66 4.99 -66.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.741 kcal (2) G-P(sol) polarization free energy of solvation -71.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds