Wall clock time and date at job start Fri Apr 10 2020 23:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35976 * 116.99981 * 2 1 4 4 C 1.38550 * 120.08112 * 359.97283 * 3 2 1 5 5 C 1.38246 * 120.01348 * 180.02562 * 4 3 2 6 6 C 1.38280 * 120.17695 * 359.75554 * 5 4 3 7 7 C 1.38192 * 120.16394 * 0.50194 * 6 5 4 8 8 C 1.38728 * 119.98688 * 359.49746 * 7 6 5 9 9 N 1.40119 * 120.08986 * 180.23268 * 8 7 6 10 10 C 1.34777 * 120.00455 * 24.80362 * 9 8 7 11 11 O 1.21298 * 119.99745 * 5.53322 * 10 9 8 12 12 C 1.50702 * 120.00260 * 185.53226 * 10 9 8 13 13 H 1.09002 * 109.46815 * 59.99843 * 12 10 9 14 14 C 1.47203 * 109.46689 * 300.00112 * 12 10 9 15 15 N 5.12861 * 137.16960 * 152.23748 * 2 1 3 16 16 C 1.50698 * 109.47378 * 179.97438 * 12 10 9 17 17 O 1.20768 * 119.99517 * 29.99880 * 16 12 10 18 18 C 1.50695 * 119.99941 * 209.99987 * 16 12 10 19 19 C 1.53010 * 109.46680 * 180.02562 * 18 16 12 20 20 C 1.50700 * 109.46598 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00364 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99877 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00261 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99754 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46962 * 90.00160 * 24 22 20 26 26 H 1.48500 * 109.47212 * 209.99640 * 24 22 20 27 27 H 1.48492 * 109.47422 * 330.00076 * 24 22 20 28 28 H 1.08996 * 109.47422 * 299.99989 * 1 2 3 29 29 H 1.09009 * 109.46945 * 59.99964 * 1 2 3 30 30 H 1.08999 * 109.47593 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99234 * 0.02562 * 4 3 2 32 32 H 1.07990 * 119.91082 * 180.02562 * 5 4 3 33 33 H 1.07996 * 119.92112 * 180.25560 * 6 5 4 34 34 H 1.08004 * 120.01197 * 179.76925 * 7 6 5 35 35 H 0.97005 * 119.99823 * 204.80690 * 9 8 7 36 36 H 1.08992 * 109.47144 * 299.99631 * 18 16 12 37 37 H 1.09001 * 109.47515 * 60.00308 * 18 16 12 38 38 H 1.09001 * 109.47025 * 299.99928 * 19 18 16 39 39 H 1.08991 * 109.47065 * 59.99947 * 19 18 16 40 40 H 0.97001 * 119.99697 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3746 -0.0006 5 6 1.9224 3.6056 -0.0011 6 6 3.3032 3.6807 0.0040 7 6 4.0614 2.5253 -0.0008 8 6 3.4373 1.2864 -0.0002 9 7 4.2039 0.1135 -0.0001 10 6 5.4597 0.1292 0.4891 11 8 5.8911 1.1308 1.0203 12 6 6.3278 -1.0974 0.3762 13 1 6.4579 -1.3550 -0.6749 14 6 5.6857 -2.2193 1.0805 15 7 5.1902 -3.0852 1.6241 16 6 7.6734 -0.8193 0.9950 17 8 7.7674 -0.0350 1.9085 18 6 8.9017 -1.5198 0.4738 19 6 10.1258 -1.0627 1.2699 20 6 11.3542 -1.7627 0.7483 21 1 11.2702 -2.4638 -0.0689 22 6 12.5852 -1.5089 1.3150 23 7 13.6572 -2.1202 0.8602 24 14 12.7304 -0.2968 2.7289 25 1 12.5630 -1.0165 4.0171 26 1 14.0675 0.3483 2.6926 27 1 11.6764 0.7413 2.6013 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2148 2.3195 -0.0006 32 1 1.3339 4.5111 -0.0011 33 1 3.7903 4.6445 0.0078 34 1 5.1397 2.5868 -0.0005 35 1 3.8309 -0.7098 -0.3522 36 1 8.7793 -2.5973 0.5831 37 1 9.0404 -1.2748 -0.5792 38 1 10.2484 0.0150 1.1610 39 1 9.9869 -1.3080 2.3227 40 1 14.5231 -1.9419 1.2592 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813059546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:17:46 Heat of formation + Delta-G solvation = -43.503282 kcal Electronic energy + Delta-G solvation = -25111.817547 eV Core-core repulsion = 21279.063856 eV Total energy + Delta-G solvation = -3832.753691 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36789 -40.21636 -38.79980 -37.49736 -36.79014 -35.08343 -33.60988 -32.31931 -31.25971 -30.46987 -29.70372 -27.61808 -26.32712 -23.64089 -22.57751 -21.72319 -21.10475 -19.75173 -19.07044 -18.43813 -17.61379 -17.30049 -16.83684 -16.24037 -16.05139 -15.76622 -15.24195 -15.01697 -14.71670 -14.62719 -14.28982 -14.11143 -13.87689 -13.78558 -13.30305 -13.10692 -13.02790 -12.62690 -12.52922 -12.47246 -12.29038 -11.95239 -11.66221 -11.50370 -11.45607 -11.01666 -10.85817 -10.33104 -10.16565 -10.13071 -9.81284 -9.26910 -9.19867 -8.89990 -8.54333 -8.12900 -6.06158 -4.05726 0.92203 1.09965 1.83630 1.96530 2.33526 2.51328 2.67257 2.86314 3.36072 3.43284 3.48473 3.52574 3.61809 3.98142 4.15469 4.46258 4.47862 4.54749 4.68948 4.73078 4.75836 4.91692 5.07507 5.11829 5.21425 5.29047 5.45741 5.47591 5.76205 5.93249 5.95824 5.97189 6.12419 6.27707 6.48678 6.60410 6.93143 6.99807 7.09157 7.23804 7.32831 7.58955 7.70854 7.79346 8.47277 8.96258 9.56417 11.06448 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.002795 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.845604 B =10015.660639 C =10894.386189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.097 3.903 4 C -0.189 4.189 5 C -0.100 4.100 6 C -0.132 4.132 7 C -0.094 4.094 8 C 0.124 3.876 9 N -0.660 5.660 10 C 0.526 3.474 11 O -0.469 6.469 12 C -0.064 4.064 13 H 0.169 0.831 14 C 0.212 3.788 15 N -0.386 5.386 16 C 0.362 3.638 17 O -0.394 6.394 18 C -0.144 4.144 19 C -0.007 4.007 20 C -0.526 4.526 21 H 0.074 0.926 22 C 0.070 3.930 23 N -0.902 5.902 24 Si 0.875 3.125 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.260 1.260 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.156 0.844 35 H 0.415 0.585 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.026 0.974 39 H 0.018 0.982 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.623 7.706 -6.867 30.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.050 3.950 4 C -0.209 4.209 5 C -0.119 4.119 6 C -0.151 4.151 7 C -0.115 4.115 8 C 0.029 3.971 9 N -0.306 5.306 10 C 0.310 3.690 11 O -0.339 6.339 12 C -0.089 4.089 13 H 0.186 0.814 14 C -0.107 4.107 15 N -0.062 5.062 16 C 0.229 3.771 17 O -0.260 6.260 18 C -0.181 4.181 19 C -0.044 4.044 20 C -0.564 4.564 21 H 0.093 0.907 22 C -0.132 4.132 23 N -0.540 5.540 24 Si 0.702 3.298 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.184 1.184 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.173 0.827 35 H 0.252 0.748 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.045 0.955 39 H 0.037 0.963 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.655 7.328 -5.112 30.015 hybrid contribution -0.210 0.450 0.217 0.542 sum -28.865 7.778 -4.895 30.292 Atomic orbital electron populations 1.23052 0.77962 1.04062 1.01394 1.86008 1.21731 1.26489 1.89213 1.18675 0.90255 0.85113 1.00980 1.21031 0.99833 0.91794 1.08196 1.20956 0.94755 0.96933 0.99220 1.21036 0.93588 0.98398 1.02055 1.21384 1.02182 0.89609 0.98276 1.17088 0.86712 0.87015 1.06240 1.43306 1.13713 1.11828 1.61728 1.19734 0.81636 0.89123 0.78547 1.90836 1.71807 1.32700 1.38598 1.19818 0.96629 0.88323 1.04171 0.81375 1.27606 0.94718 0.93849 0.94559 1.81278 1.07636 1.09781 1.07553 1.24464 0.88435 0.81325 0.82833 1.90492 1.86717 1.26269 1.22558 1.22083 0.92377 1.00929 1.02748 1.19463 0.91999 0.97547 0.95394 1.21052 0.90283 1.25799 1.19240 0.90743 1.24973 0.95748 0.95674 0.96780 1.69905 0.98999 1.42890 1.42208 0.86833 0.77592 0.82404 0.82967 1.20247 1.21357 1.18446 0.92584 0.92545 0.88149 0.85139 0.85659 0.85267 0.82709 0.74822 0.88618 0.88143 0.95525 0.96329 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -2.88 9.91 -19.67 -0.19 -3.07 16 3 C 0.10 0.96 6.70 -39.07 -0.26 0.70 16 4 C -0.19 -1.56 9.04 -39.46 -0.36 -1.91 16 5 C -0.10 -0.80 10.04 -39.56 -0.40 -1.20 16 6 C -0.13 -1.24 10.04 -39.58 -0.40 -1.64 16 7 C -0.09 -1.08 8.72 -39.42 -0.34 -1.43 16 8 C 0.12 1.39 6.45 -83.49 -0.54 0.86 16 9 N -0.66 -6.89 5.21 -9.75 -0.05 -6.94 16 10 C 0.53 6.62 6.88 -10.98 -0.08 6.55 16 11 O -0.47 -7.68 11.82 -17.84 -0.21 -7.89 16 12 C -0.06 -0.71 2.86 -95.71 -0.27 -0.98 16 13 H 0.17 0.99 8.12 -51.93 -0.42 0.57 16 14 C 0.21 2.65 14.33 -20.75 -0.30 2.35 16 15 N -0.39 -5.60 18.54 42.16 0.78 -4.82 16 16 C 0.36 5.73 6.05 -29.04 -0.18 5.56 16 17 O -0.39 -7.93 14.51 -17.39 -0.25 -8.18 16 18 C -0.14 -2.46 5.56 -27.88 -0.16 -2.61 16 19 C -0.01 -0.15 3.33 -27.88 -0.09 -0.25 16 20 C -0.53 -14.49 9.66 -34.44 -0.33 -14.82 16 21 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 22 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 23 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 24 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 28 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.06 0.22 7.66 -51.92 -0.40 -0.18 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.13 0.74 6.30 -52.49 -0.33 0.41 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.16 1.97 5.79 -52.48 -0.30 1.67 16 35 H 0.42 3.40 8.13 -40.82 -0.33 3.07 16 36 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.03 0.65 7.16 -51.93 -0.37 0.27 16 39 H 0.02 0.45 7.53 -51.93 -0.39 0.06 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 352.29 15.07 5.31 5.31 Total: -1.00 -36.47 352.29 -5.96 -42.43 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -4.65 Total: -1.86 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.80 Total: -5.75 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 1.50 Total: -38.45 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.66 Total: -19.15 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.47 -5.96 -42.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813059546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.071 kcal (2) G-P(sol) polarization free energy of solvation -36.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds