Wall clock time and date at job start Fri Apr 10 2020 23:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35976 * 116.99981 * 2 1 4 4 C 1.38550 * 120.08112 * 359.97283 * 3 2 1 5 5 C 1.38246 * 120.01348 * 180.02562 * 4 3 2 6 6 C 1.38280 * 120.17695 * 359.75554 * 5 4 3 7 7 C 1.38192 * 120.16394 * 0.50194 * 6 5 4 8 8 C 1.38728 * 119.98688 * 359.49746 * 7 6 5 9 9 N 1.40119 * 120.08986 * 180.23268 * 8 7 6 10 10 C 1.34777 * 120.00455 * 24.80362 * 9 8 7 11 11 O 1.21298 * 119.99745 * 5.53322 * 10 9 8 12 12 C 1.50702 * 120.00260 * 185.53226 * 10 9 8 13 13 H 1.09002 * 109.46815 * 59.99843 * 12 10 9 14 14 C 1.47203 * 109.46689 * 300.00112 * 12 10 9 15 15 N 5.12861 * 137.16960 * 152.23748 * 2 1 3 16 16 C 1.50698 * 109.47378 * 179.97438 * 12 10 9 17 17 O 1.20768 * 119.99517 * 29.99880 * 16 12 10 18 18 C 1.50695 * 119.99941 * 209.99987 * 16 12 10 19 19 C 1.53010 * 109.46680 * 180.02562 * 18 16 12 20 20 C 1.50700 * 109.46598 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00364 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99877 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00261 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99754 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46962 * 90.00160 * 24 22 20 26 26 H 1.48500 * 109.47212 * 209.99640 * 24 22 20 27 27 H 1.48492 * 109.47422 * 330.00076 * 24 22 20 28 28 H 1.08996 * 109.47422 * 299.99989 * 1 2 3 29 29 H 1.09009 * 109.46945 * 59.99964 * 1 2 3 30 30 H 1.08999 * 109.47593 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99234 * 0.02562 * 4 3 2 32 32 H 1.07990 * 119.91082 * 180.02562 * 5 4 3 33 33 H 1.07996 * 119.92112 * 180.25560 * 6 5 4 34 34 H 1.08004 * 120.01197 * 179.76925 * 7 6 5 35 35 H 0.97005 * 119.99823 * 204.80690 * 9 8 7 36 36 H 1.08992 * 109.47144 * 299.99631 * 18 16 12 37 37 H 1.09001 * 109.47515 * 60.00308 * 18 16 12 38 38 H 1.09001 * 109.47025 * 299.99928 * 19 18 16 39 39 H 1.08991 * 109.47065 * 59.99947 * 19 18 16 40 40 H 0.97001 * 119.99697 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3746 -0.0006 5 6 1.9224 3.6056 -0.0011 6 6 3.3032 3.6807 0.0040 7 6 4.0614 2.5253 -0.0008 8 6 3.4373 1.2864 -0.0002 9 7 4.2039 0.1135 -0.0001 10 6 5.4597 0.1292 0.4891 11 8 5.8911 1.1308 1.0203 12 6 6.3278 -1.0974 0.3762 13 1 6.4579 -1.3550 -0.6749 14 6 5.6857 -2.2193 1.0805 15 7 5.1902 -3.0852 1.6241 16 6 7.6734 -0.8193 0.9950 17 8 7.7674 -0.0350 1.9085 18 6 8.9017 -1.5198 0.4738 19 6 10.1258 -1.0627 1.2699 20 6 11.3542 -1.7627 0.7483 21 1 11.2702 -2.4638 -0.0689 22 6 12.5852 -1.5089 1.3150 23 7 13.6572 -2.1202 0.8602 24 14 12.7304 -0.2968 2.7289 25 1 12.5630 -1.0165 4.0171 26 1 14.0675 0.3483 2.6926 27 1 11.6764 0.7413 2.6013 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2148 2.3195 -0.0006 32 1 1.3339 4.5111 -0.0011 33 1 3.7903 4.6445 0.0078 34 1 5.1397 2.5868 -0.0005 35 1 3.8309 -0.7098 -0.3522 36 1 8.7793 -2.5973 0.5831 37 1 9.0404 -1.2748 -0.5792 38 1 10.2484 0.0150 1.1610 39 1 9.9869 -1.3080 2.3227 40 1 14.5231 -1.9419 1.2592 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813059546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:17:45 Heat of formation + Delta-G solvation = -67.454045 kcal Electronic energy + Delta-G solvation = -25112.856130 eV Core-core repulsion = 21279.063856 eV Total energy + Delta-G solvation = -3833.792274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.28841 -41.10340 -39.88599 -38.21901 -37.86120 -35.96977 -35.54847 -33.64065 -32.89080 -31.15723 -30.49203 -28.22673 -27.95567 -24.59276 -23.45795 -23.13037 -22.03327 -21.13860 -19.95374 -19.38782 -18.94888 -18.28816 -18.12222 -17.09620 -16.84309 -16.70944 -16.24034 -16.12355 -16.04002 -15.80436 -15.63058 -15.16623 -14.97015 -14.71966 -14.51293 -14.41092 -14.12840 -13.89281 -13.81328 -13.46114 -13.26364 -13.09052 -12.89816 -12.61215 -12.22235 -12.14907 -12.03583 -11.94197 -11.74044 -11.68443 -11.37145 -11.13767 -10.75770 -10.54867 -9.61305 -8.85817 -8.29077 -6.31095 0.17120 0.40320 0.65114 1.02018 1.33412 1.33753 1.36997 1.47649 1.50208 1.79743 2.27439 2.36004 2.57822 2.81861 2.83983 3.07236 3.25635 3.86027 3.96579 3.99230 4.10762 4.26412 4.37142 4.41690 4.45532 4.49317 4.53549 4.55965 4.74190 4.77256 5.06030 5.09687 5.26380 5.38965 5.41282 5.47112 5.58569 5.63766 5.79999 6.07865 6.14978 6.25403 6.36220 6.42588 6.77832 6.84309 7.34251 8.86356 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.002795 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.845604 B =10015.660639 C =10894.386189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.092 3.908 4 C -0.189 4.189 5 C -0.094 4.094 6 C -0.143 4.143 7 C -0.114 4.114 8 C 0.096 3.904 9 N -0.645 5.645 10 C 0.526 3.474 11 O -0.513 6.513 12 C -0.046 4.046 13 H 0.230 0.770 14 C 0.232 3.768 15 N -0.418 5.418 16 C 0.371 3.629 17 O -0.441 6.441 18 C -0.142 4.142 19 C -0.008 4.008 20 C -0.524 4.524 21 H 0.056 0.944 22 C 0.013 3.987 23 N -0.944 5.944 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.281 1.281 27 H -0.258 1.258 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.426 0.574 36 H 0.114 0.886 37 H 0.131 0.869 38 H 0.015 0.985 39 H 0.005 0.995 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.501 8.214 -7.656 33.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.045 3.955 4 C -0.208 4.208 5 C -0.113 4.113 6 C -0.161 4.161 7 C -0.134 4.134 8 C 0.002 3.998 9 N -0.291 5.291 10 C 0.310 3.690 11 O -0.386 6.386 12 C -0.071 4.071 13 H 0.246 0.754 14 C -0.087 4.087 15 N -0.094 5.094 16 C 0.242 3.758 17 O -0.311 6.311 18 C -0.179 4.179 19 C -0.046 4.046 20 C -0.562 4.562 21 H 0.075 0.925 22 C -0.184 4.184 23 N -0.584 5.584 24 Si 0.756 3.244 25 H -0.198 1.198 26 H -0.206 1.206 27 H -0.182 1.182 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.265 0.735 36 H 0.132 0.868 37 H 0.149 0.851 38 H 0.034 0.966 39 H 0.024 0.976 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -31.584 7.808 -5.927 33.070 hybrid contribution 0.575 0.282 0.402 0.756 sum -31.009 8.090 -5.525 32.520 Atomic orbital electron populations 1.23343 0.76030 1.05516 1.02484 1.85987 1.23756 1.26173 1.89072 1.18801 0.89923 0.86118 1.00627 1.21410 1.01240 0.91195 1.06926 1.21324 0.94303 0.98176 0.97452 1.21272 0.94491 0.98314 1.02068 1.21348 1.01537 0.90799 0.99722 1.17278 0.87626 0.86980 1.07904 1.43143 1.12901 1.12275 1.60800 1.19857 0.82192 0.88826 0.78105 1.90840 1.72733 1.34300 1.40717 1.19730 0.93266 0.87283 1.06809 0.75353 1.27629 0.93992 0.93334 0.93696 1.81310 1.08575 1.11080 1.08449 1.24507 0.89934 0.79715 0.81648 1.90498 1.87675 1.28291 1.24637 1.22015 0.90465 1.01976 1.03417 1.19365 0.93285 0.96438 0.95515 1.21432 0.91725 1.24863 1.18137 0.92547 1.25775 0.95816 0.97531 0.99327 1.70018 0.99610 1.44834 1.43972 0.85933 0.77753 0.80471 0.80205 1.19847 1.20616 1.18197 0.91898 0.90954 0.86686 0.82359 0.82703 0.84042 0.84739 0.73546 0.86834 0.85097 0.96641 0.97614 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.35 9.91 -93.28 -0.92 -6.27 16 3 C 0.09 1.68 6.70 22.60 0.15 1.83 16 4 C -0.19 -2.60 9.04 22.35 0.20 -2.40 16 5 C -0.09 -1.29 10.04 22.28 0.22 -1.06 16 6 C -0.14 -2.55 10.04 22.27 0.22 -2.33 16 7 C -0.11 -2.63 8.72 22.38 0.20 -2.43 16 8 C 0.10 2.10 6.45 38.19 0.25 2.35 16 9 N -0.65 -12.75 5.21 -303.13 -1.58 -14.33 16 10 C 0.53 12.76 6.88 87.66 0.60 13.37 16 11 O -0.51 -17.04 11.82 19.27 0.23 -16.81 16 12 C -0.05 -0.92 2.86 -14.09 -0.04 -0.96 16 13 H 0.23 1.64 8.12 -2.39 -0.02 1.62 16 14 C 0.23 5.34 14.33 89.44 1.28 6.62 16 15 N -0.42 -11.48 18.54 20.01 0.37 -11.11 16 16 C 0.37 11.25 6.05 29.10 0.18 11.42 16 17 O -0.44 -17.81 14.51 20.88 0.30 -17.50 16 18 C -0.14 -4.57 5.56 29.85 0.17 -4.41 16 19 C -0.01 -0.39 3.33 29.85 0.10 -0.29 16 20 C -0.52 -28.93 9.66 25.60 0.25 -28.69 16 21 H 0.06 3.25 7.99 -2.91 -0.02 3.22 16 22 C 0.01 0.76 5.47 84.65 0.46 1.23 16 23 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 24 Si 0.93 46.11 27.47 68.60 1.88 47.99 16 25 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 27 H -0.26 -12.55 6.54 99.48 0.65 -11.90 16 28 H 0.06 0.40 7.66 -2.39 -0.02 0.38 16 29 H 0.07 0.32 7.66 -2.38 -0.02 0.31 16 30 H 0.11 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.16 1.21 6.30 -2.91 -0.02 1.19 16 32 H 0.16 1.15 8.06 -2.92 -0.02 1.13 16 33 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.13 3.62 5.79 -2.91 -0.02 3.60 16 35 H 0.43 6.21 8.13 -92.70 -0.75 5.45 16 36 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.13 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.02 0.74 7.16 -2.39 -0.02 0.73 16 39 H 0.01 0.27 7.53 -2.39 -0.02 0.25 16 40 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -82.15 352.29 6.22 -75.93 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 0.29 Total: 4.59 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 5.35 Total: -4.49 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -0.91 Total: -83.44 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -0.39 Total: -40.58 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 47.99 kcal Total: -82.15 6.22 -75.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813059546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.478 kcal (2) G-P(sol) polarization free energy of solvation -82.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds