Wall clock time and date at job start Fri Apr 10 2020 23:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.50699 * 109.47352 * 269.99857 * 3 2 1 5 5 C 1.38304 * 119.96369 * 269.72941 * 4 3 2 6 6 C 1.38270 * 120.14968 * 179.72421 * 5 4 3 7 7 C 1.38126 * 120.07035 * 0.54609 * 6 5 4 8 8 C 1.38886 * 119.92580 * 359.73122 * 7 6 5 9 9 N 1.39674 * 120.07239 * 180.02562 * 8 7 6 10 10 C 1.46499 * 120.00491 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47320 * 179.97438 * 10 9 8 12 12 H 1.07988 * 120.00317 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99545 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99509 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00310 * 0.02562 * 13 11 10 16 16 H 1.48509 * 109.47191 * 89.99905 * 15 13 11 17 17 H 1.48497 * 109.47203 * 209.99581 * 15 13 11 18 18 H 1.48502 * 109.47343 * 329.99832 * 15 13 11 19 19 C 1.38085 * 119.95854 * 90.00090 * 4 3 2 20 20 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 21 21 O 1.21283 * 120.00360 * 179.72577 * 20 2 1 22 22 C 1.50706 * 120.00081 * 359.97438 * 20 2 1 23 23 F 1.39896 * 109.47293 * 179.72939 * 22 20 2 24 24 F 1.39902 * 109.46957 * 299.72813 * 22 20 2 25 25 F 1.39898 * 109.46958 * 59.72474 * 22 20 2 26 26 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 27 27 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 28 28 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 29 29 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 30 30 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 31 31 H 1.08004 * 119.92644 * 359.97438 * 5 4 3 32 32 H 1.07998 * 119.96218 * 180.27588 * 6 5 4 33 33 H 1.08007 * 120.03668 * 179.74332 * 7 6 5 34 34 H 0.97002 * 120.00171 * 179.97438 * 9 8 7 35 35 H 1.09007 * 109.46795 * 300.00395 * 10 9 8 36 36 H 1.09002 * 109.46748 * 59.99564 * 10 9 8 37 37 H 0.97002 * 120.00130 * 180.02562 * 14 13 11 38 38 H 1.07993 * 120.04058 * 359.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 6 3.6041 1.3089 -2.0701 6 6 3.8358 1.7011 -3.3756 7 6 2.9185 2.4985 -4.0318 8 6 1.7599 2.9017 -3.3808 9 7 0.8300 3.7077 -4.0416 10 6 1.0765 4.1291 -5.4228 11 6 -0.0695 4.9838 -5.8994 12 1 -0.8987 5.1919 -5.2397 13 6 -0.0592 5.5001 -7.1779 14 7 -1.0591 6.2464 -7.5936 15 14 1.3748 5.1396 -8.3193 16 1 1.0956 3.9006 -9.0889 17 1 1.5573 6.2752 -9.2587 18 1 2.6115 4.9565 -7.5179 19 6 1.5275 2.5011 -2.0709 20 6 2.1388 -1.1671 -0.0005 21 8 3.3516 -1.1672 -0.0055 22 6 1.3854 -2.4723 -0.0005 23 9 2.2945 -3.5356 -0.0073 24 9 0.5862 -2.5494 1.1452 25 9 0.5759 -2.5435 -1.1393 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1498 1.1385 0.5139 31 1 4.3252 0.6893 -1.5577 32 1 4.7370 1.3872 -3.8812 33 1 3.1021 2.8080 -5.0502 34 1 0.0210 3.9884 -3.5860 35 1 2.0019 4.7035 -5.4678 36 1 1.1635 3.2497 -6.0610 37 1 -1.0522 6.6093 -8.4932 38 1 0.6273 2.8125 -1.5620 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819407566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:18:10 Heat of formation + Delta-G solvation = -148.921021 kcal Electronic energy + Delta-G solvation = -26132.063688 eV Core-core repulsion = 21752.882000 eV Total energy + Delta-G solvation = -4379.181687 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.69335 -48.18418 -48.14759 -40.46120 -38.98232 -36.44552 -35.11519 -32.69376 -31.68180 -29.88532 -28.50586 -27.69356 -26.71946 -25.46230 -22.63930 -21.99082 -21.35872 -19.98083 -19.20107 -19.07214 -18.41889 -17.59126 -16.78638 -16.40641 -15.87218 -15.69283 -15.33082 -15.11950 -14.93221 -14.76644 -14.57649 -14.36586 -14.25067 -14.24116 -13.66772 -13.57943 -13.53288 -13.46446 -13.23179 -12.85545 -12.71014 -12.51617 -12.10187 -11.99976 -11.29100 -10.96248 -10.86965 -10.78210 -10.64796 -10.05532 -9.57176 -9.54873 -9.28593 -8.77410 -8.58066 -6.79822 -6.28731 -4.31069 1.30967 1.50820 1.81870 2.02486 2.70276 3.17088 3.19347 3.24843 3.26522 3.64767 3.79652 4.20851 4.22331 4.25867 4.62256 4.77163 4.80748 5.05573 5.05818 5.26284 5.33707 5.34841 5.57055 5.73941 5.77506 5.89588 6.11095 6.25049 6.47783 6.56862 6.72236 6.83081 6.92588 6.94802 7.12749 7.21186 7.33145 7.86343 8.31661 8.50226 8.73750 9.30426 10.83670 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.022375 B = 0.002834 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.119721 B = 9876.979237 C =10126.053701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.579 5.579 3 C 0.158 3.842 4 C -0.073 4.073 5 C -0.176 4.176 6 C -0.072 4.072 7 C -0.196 4.196 8 C 0.229 3.771 9 N -0.722 5.722 10 C 0.223 3.777 11 C -0.542 4.542 12 H 0.078 0.922 13 C 0.076 3.924 14 N -0.891 5.891 15 Si 0.879 3.121 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.263 1.263 19 C -0.195 4.195 20 C 0.482 3.518 21 O -0.476 6.476 22 C 0.451 3.549 23 F -0.154 7.154 24 F -0.169 7.169 25 F -0.164 7.164 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.396 0.604 35 H 0.018 0.982 36 H 0.013 0.987 37 H 0.268 0.732 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 -14.538 17.384 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.311 5.311 3 C 0.037 3.963 4 C -0.075 4.075 5 C -0.197 4.197 6 C -0.091 4.091 7 C -0.220 4.220 8 C 0.120 3.880 9 N -0.345 5.345 10 C 0.100 3.900 11 C -0.580 4.580 12 H 0.096 0.904 13 C -0.127 4.127 14 N -0.529 5.529 15 Si 0.705 3.295 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.188 1.188 19 C -0.219 4.219 20 C 0.262 3.738 21 O -0.348 6.348 22 C 0.393 3.607 23 F -0.136 7.136 24 F -0.150 7.150 25 F -0.146 7.146 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.231 0.769 35 H 0.036 0.964 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.985 -14.341 16.991 22.786 hybrid contribution 0.007 -0.214 -0.738 0.768 sum 4.993 -14.554 16.254 22.382 Atomic orbital electron populations 1.22332 0.77826 1.05633 1.03235 1.47860 1.08057 1.05133 1.70041 1.20596 0.98151 0.82829 0.94681 1.19567 0.95026 0.97947 0.94944 1.20702 0.98511 1.04830 0.95638 1.20830 0.98008 0.95966 0.94302 1.20768 0.95418 1.04688 1.01109 1.17996 0.89609 0.89415 0.90974 1.45187 1.21705 1.52454 1.15163 1.19490 0.97595 0.94420 0.78461 1.21048 1.05567 1.31557 0.99816 0.90365 1.24825 0.96034 0.94201 0.97683 1.69877 1.31000 1.33312 1.18672 0.86804 0.83156 0.78490 0.81052 1.19824 1.20793 1.18796 1.20335 1.01212 1.05943 0.94421 1.20244 0.88452 0.84636 0.80514 1.90852 1.11805 1.85152 1.46964 1.20315 0.78244 0.87503 0.74662 1.93261 1.66563 1.57719 1.96011 1.93250 1.74640 1.96779 1.50369 1.93230 1.73827 1.96559 1.50953 0.90948 0.88958 0.90067 0.88554 0.88451 0.86589 0.86682 0.86180 0.76924 0.96427 0.96921 0.92197 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.37 9.61 59.84 0.58 0.94 16 2 N -0.58 -5.63 2.86 -182.95 -0.52 -6.15 16 3 C 0.16 1.56 5.53 -5.19 -0.03 1.53 16 4 C -0.07 -0.95 5.46 -104.65 -0.57 -1.53 16 5 C -0.18 -2.50 9.70 -39.55 -0.38 -2.89 16 6 C -0.07 -1.09 10.04 -39.61 -0.40 -1.49 16 7 C -0.20 -3.39 9.31 -39.38 -0.37 -3.76 16 8 C 0.23 3.98 6.65 -83.79 -0.56 3.43 16 9 N -0.72 -14.08 5.72 -59.81 -0.34 -14.42 16 10 C 0.22 5.12 3.73 -5.20 -0.02 5.10 16 11 C -0.54 -14.53 9.83 -34.44 -0.34 -14.87 16 12 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 13 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 15 Si 0.88 20.48 27.47 -169.99 -4.67 15.81 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 19 C -0.20 -2.78 9.55 -39.38 -0.38 -3.16 16 20 C 0.48 5.51 7.25 -10.98 -0.08 5.43 16 21 O -0.48 -6.66 15.73 5.56 0.09 -6.57 16 22 C 0.45 4.61 2.80 36.01 0.10 4.71 16 23 F -0.15 -1.75 16.92 2.25 0.04 -1.71 16 24 F -0.17 -1.50 16.38 2.25 0.04 -1.46 16 25 F -0.16 -1.69 15.23 2.25 0.03 -1.66 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 28 H 0.08 0.59 5.28 -51.93 -0.27 0.32 16 29 H 0.10 0.71 8.01 -51.93 -0.42 0.29 16 30 H 0.10 0.97 7.37 -51.93 -0.38 0.59 16 31 H 0.12 1.60 7.59 -52.48 -0.40 1.20 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.12 2.15 6.73 -52.48 -0.35 1.80 16 34 H 0.40 7.29 8.33 -40.82 -0.34 6.95 16 35 H 0.02 0.42 7.01 -51.93 -0.36 0.06 16 36 H 0.01 0.30 7.38 -51.93 -0.38 -0.08 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -30.13 336.13 -6.22 -36.34 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.18 Total: 4.59 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.54 Total: -4.54 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.09 Total: -45.87 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: 0.09 Total: -6.57 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.11 Total: -4.83 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.13 -6.22 -36.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819407566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.578 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds