Wall clock time and date at job start Fri Apr 10 2020 23:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.50699 * 109.47352 * 269.99857 * 3 2 1 5 5 C 1.38304 * 119.96369 * 269.72941 * 4 3 2 6 6 C 1.38270 * 120.14968 * 179.72421 * 5 4 3 7 7 C 1.38126 * 120.07035 * 0.54609 * 6 5 4 8 8 C 1.38886 * 119.92580 * 359.73122 * 7 6 5 9 9 N 1.39674 * 120.07239 * 180.02562 * 8 7 6 10 10 C 1.46499 * 120.00491 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47320 * 179.97438 * 10 9 8 12 12 H 1.07988 * 120.00317 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99545 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99509 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00310 * 0.02562 * 13 11 10 16 16 H 1.48509 * 109.47191 * 89.99905 * 15 13 11 17 17 H 1.48497 * 109.47203 * 209.99581 * 15 13 11 18 18 H 1.48502 * 109.47343 * 329.99832 * 15 13 11 19 19 C 1.38085 * 119.95854 * 90.00090 * 4 3 2 20 20 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 21 21 O 1.21283 * 120.00360 * 179.72577 * 20 2 1 22 22 C 1.50706 * 120.00081 * 359.97438 * 20 2 1 23 23 F 1.39896 * 109.47293 * 179.72939 * 22 20 2 24 24 F 1.39902 * 109.46957 * 299.72813 * 22 20 2 25 25 F 1.39898 * 109.46958 * 59.72474 * 22 20 2 26 26 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 27 27 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 28 28 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 29 29 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 30 30 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 31 31 H 1.08004 * 119.92644 * 359.97438 * 5 4 3 32 32 H 1.07998 * 119.96218 * 180.27588 * 6 5 4 33 33 H 1.08007 * 120.03668 * 179.74332 * 7 6 5 34 34 H 0.97002 * 120.00171 * 179.97438 * 9 8 7 35 35 H 1.09007 * 109.46795 * 300.00395 * 10 9 8 36 36 H 1.09002 * 109.46748 * 59.99564 * 10 9 8 37 37 H 0.97002 * 120.00130 * 180.02562 * 14 13 11 38 38 H 1.07993 * 120.04058 * 359.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 6 3.6041 1.3089 -2.0701 6 6 3.8358 1.7011 -3.3756 7 6 2.9185 2.4985 -4.0318 8 6 1.7599 2.9017 -3.3808 9 7 0.8300 3.7077 -4.0416 10 6 1.0765 4.1291 -5.4228 11 6 -0.0695 4.9838 -5.8994 12 1 -0.8987 5.1919 -5.2397 13 6 -0.0592 5.5001 -7.1779 14 7 -1.0591 6.2464 -7.5936 15 14 1.3748 5.1396 -8.3193 16 1 1.0956 3.9006 -9.0889 17 1 1.5573 6.2752 -9.2587 18 1 2.6115 4.9565 -7.5179 19 6 1.5275 2.5011 -2.0709 20 6 2.1388 -1.1671 -0.0005 21 8 3.3516 -1.1672 -0.0055 22 6 1.3854 -2.4723 -0.0005 23 9 2.2945 -3.5356 -0.0073 24 9 0.5862 -2.5494 1.1452 25 9 0.5759 -2.5435 -1.1393 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1498 1.1385 0.5139 31 1 4.3252 0.6893 -1.5577 32 1 4.7370 1.3872 -3.8812 33 1 3.1021 2.8080 -5.0502 34 1 0.0210 3.9884 -3.5860 35 1 2.0019 4.7035 -5.4678 36 1 1.1635 3.2497 -6.0610 37 1 -1.0522 6.6093 -8.4932 38 1 0.6273 2.8125 -1.5620 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819407566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:18:09 Heat of formation + Delta-G solvation = -167.329998 kcal Electronic energy + Delta-G solvation = -26132.861961 eV Core-core repulsion = 21752.882000 eV Total energy + Delta-G solvation = -4379.979961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.49509 -49.00158 -48.93474 -41.36082 -40.16588 -37.45473 -36.47622 -34.63877 -32.75041 -31.40509 -29.43095 -28.62413 -28.17888 -26.35307 -24.24887 -23.28319 -22.34607 -21.16274 -20.01255 -19.88457 -19.38160 -19.21544 -17.82679 -17.54951 -17.17107 -16.75655 -16.53545 -16.15298 -15.88426 -15.72796 -15.64206 -15.38115 -15.21460 -15.15030 -15.04679 -14.96982 -14.64103 -14.41614 -14.36231 -14.28220 -13.75015 -13.50857 -13.35636 -12.98323 -12.84257 -12.69817 -12.20419 -12.02180 -11.87738 -11.59230 -11.57011 -11.05679 -10.75364 -10.09571 -9.73478 -8.40113 -8.19662 -6.47388 0.30182 0.63249 0.75090 0.92492 1.33595 1.34725 1.45330 1.90311 2.27395 2.40100 2.78224 2.84534 2.94961 3.00094 3.05563 3.81504 3.93093 4.06729 4.22627 4.34749 4.52366 4.54091 4.64678 4.66162 4.72523 4.84740 4.90197 5.03946 5.06901 5.14601 5.31428 5.48428 5.60785 5.69597 5.81769 5.88920 6.13820 6.31072 6.51221 6.64894 7.04641 7.22165 8.75497 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.022375 B = 0.002834 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.119721 B = 9876.979237 C =10126.053701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.573 5.573 3 C 0.158 3.842 4 C -0.067 4.067 5 C -0.175 4.175 6 C -0.076 4.076 7 C -0.218 4.218 8 C 0.203 3.797 9 N -0.731 5.731 10 C 0.239 3.761 11 C -0.548 4.548 12 H 0.047 0.953 13 C 0.019 3.981 14 N -0.937 5.937 15 Si 0.944 3.056 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.249 1.249 19 C -0.184 4.184 20 C 0.478 3.522 21 O -0.508 6.508 22 C 0.458 3.542 23 F -0.162 7.162 24 F -0.158 7.158 25 F -0.164 7.164 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.399 0.601 35 H 0.013 0.987 36 H 0.011 0.989 37 H 0.271 0.729 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 -15.572 18.826 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.304 5.304 3 C 0.038 3.962 4 C -0.068 4.068 5 C -0.196 4.196 6 C -0.094 4.094 7 C -0.242 4.242 8 C 0.098 3.902 9 N -0.357 5.357 10 C 0.115 3.885 11 C -0.586 4.586 12 H 0.066 0.934 13 C -0.180 4.180 14 N -0.576 5.576 15 Si 0.767 3.233 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.173 1.173 19 C -0.207 4.207 20 C 0.258 3.742 21 O -0.382 6.382 22 C 0.400 3.600 23 F -0.144 7.144 24 F -0.140 7.140 25 F -0.146 7.146 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.148 0.852 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.124 0.876 34 H 0.234 0.766 35 H 0.031 0.969 36 H 0.028 0.972 37 H 0.080 0.920 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.711 -15.398 18.477 24.721 hybrid contribution -0.262 0.056 -1.035 1.069 sum 5.449 -15.342 17.442 23.860 Atomic orbital electron populations 1.22578 0.76046 1.05967 1.05064 1.47951 1.09135 1.04530 1.68756 1.20703 0.99291 0.83592 0.92634 1.19896 0.93958 0.96595 0.96379 1.20944 0.99056 1.04245 0.95346 1.21033 0.98240 0.95403 0.94760 1.20828 0.96339 1.06036 1.00951 1.18254 0.89520 0.90161 0.92298 1.44891 1.22726 1.54059 1.14066 1.19083 0.95521 0.93397 0.80489 1.21332 1.05873 1.31820 0.99574 0.93434 1.25735 0.98810 0.93958 0.99513 1.70009 1.33296 1.34903 1.19427 0.85763 0.80084 0.78565 0.78908 1.18955 1.20313 1.17251 1.20585 1.02111 1.04915 0.93117 1.20437 0.88209 0.85320 0.80265 1.90837 1.13062 1.85674 1.48667 1.20104 0.78117 0.86855 0.74938 1.93246 1.66974 1.58071 1.96073 1.93272 1.74257 1.96696 1.49761 1.93235 1.73751 1.96529 1.51062 0.88395 0.88097 0.90311 0.85196 0.88289 0.85958 0.84948 0.87556 0.76633 0.96904 0.97168 0.91957 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 9.61 127.77 1.23 1.71 16 2 N -0.57 -9.39 2.86 -851.13 -2.43 -11.82 16 3 C 0.16 2.57 5.53 85.63 0.47 3.04 16 4 C -0.07 -1.55 5.46 -19.89 -0.11 -1.66 16 5 C -0.18 -4.62 9.70 22.29 0.22 -4.41 16 6 C -0.08 -2.18 10.04 22.25 0.22 -1.95 16 7 C -0.22 -7.38 9.31 22.40 0.21 -7.17 16 8 C 0.20 6.88 6.65 38.21 0.25 7.13 16 9 N -0.73 -28.42 5.72 -343.13 -1.96 -30.38 16 10 C 0.24 11.01 3.73 85.63 0.32 11.33 16 11 C -0.55 -30.02 9.83 25.60 0.25 -29.77 16 12 H 0.05 2.82 7.84 -2.92 -0.02 2.79 16 13 C 0.02 1.08 5.47 84.66 0.46 1.54 16 14 N -0.94 -56.04 13.96 21.45 0.30 -55.74 16 15 Si 0.94 42.25 27.47 68.60 1.88 44.14 16 16 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 19 C -0.18 -4.79 9.55 22.40 0.21 -4.58 16 20 C 0.48 9.93 7.25 87.66 0.64 10.57 16 21 O -0.51 -13.44 15.73 -3.04 -0.05 -13.49 16 22 C 0.46 8.53 2.80 71.24 0.20 8.73 16 23 F -0.16 -3.50 16.92 44.97 0.76 -2.73 16 24 F -0.16 -2.44 16.38 44.97 0.74 -1.71 16 25 F -0.16 -3.09 15.23 44.97 0.69 -2.40 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.10 0.96 8.07 -2.39 -0.02 0.94 16 28 H 0.08 0.93 5.28 -2.38 -0.01 0.91 16 29 H 0.13 1.30 8.01 -2.39 -0.02 1.28 16 30 H 0.10 1.66 7.37 -2.39 -0.02 1.64 16 31 H 0.12 3.12 7.59 -2.91 -0.02 3.10 16 32 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.11 3.82 6.73 -2.91 -0.02 3.80 16 34 H 0.40 14.69 8.33 -92.71 -0.77 13.92 16 35 H 0.01 0.62 7.01 -2.38 -0.02 0.60 16 36 H 0.01 0.49 7.38 -2.39 -0.02 0.47 16 37 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -65.96 336.13 4.79 -61.17 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.29 Total: 18.47 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 4.58 Total: -5.49 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -4.10 Total: -97.94 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.05 Total: -13.49 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 2.18 Total: -6.85 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.88 Total: 44.14 kcal Total: -65.96 4.79 -61.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819407566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.160 kcal (2) G-P(sol) polarization free energy of solvation -65.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds