Wall clock time and date at job start Fri Apr 10 2020 23:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35635 * 117.00046 * 2 1 4 4 C 1.40749 * 120.33062 * 359.97438 * 3 2 1 5 5 C 1.35027 * 120.03492 * 180.02562 * 4 3 2 6 6 N 1.36020 * 120.85932 * 0.02562 * 5 4 3 7 7 C 1.36646 * 120.89291 * 359.97438 * 6 5 4 8 8 C 1.37994 * 120.33531 * 179.97438 * 3 2 1 9 9 N 1.33367 * 108.62162 * 180.02562 * 7 6 5 10 10 C 1.32268 * 109.87601 * 359.72818 * 9 7 6 11 11 C 1.38625 * 108.24774 * 0.43915 * 10 9 7 12 12 C 1.41401 * 126.79735 * 179.82956 * 11 10 9 13 13 O 1.21733 * 120.00144 * 359.69071 * 12 11 10 14 14 O 1.35004 * 119.99573 * 179.41718 * 12 11 10 15 15 C 1.42904 * 116.99732 * 185.57281 * 14 12 11 16 16 C 1.50694 * 112.85090 * 51.87281 * 15 14 12 17 17 H 1.07999 * 120.00343 * 242.80189 * 16 15 14 18 18 C 1.37882 * 120.00031 * 62.80280 * 16 15 14 19 19 N 1.31519 * 119.99493 * 353.11251 * 18 16 15 20 20 Si 1.86799 * 120.00194 * 173.11030 * 18 16 15 21 21 H 1.48495 * 109.47183 * 59.99692 * 20 18 16 22 22 H 1.48499 * 109.47301 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46726 * 300.00008 * 20 18 16 24 24 C 1.53784 * 113.61207 * 280.56631 * 15 14 12 25 25 C 1.53778 * 87.07997 * 220.02122 * 24 15 14 26 26 C 1.53775 * 87.08398 * 25.43409 * 25 24 15 27 27 H 1.08994 * 109.46881 * 60.00389 * 1 2 3 28 28 H 1.08997 * 109.46914 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46911 * 300.00510 * 1 2 3 30 30 H 1.08000 * 119.98645 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.57148 * 180.02562 * 5 4 3 32 32 H 1.08002 * 120.38942 * 359.97438 * 8 3 2 33 33 H 1.08002 * 125.87530 * 180.27166 * 10 9 7 34 34 H 0.97001 * 119.99301 * 185.02346 * 19 18 16 35 35 H 1.08998 * 113.61833 * 334.57375 * 24 15 14 36 36 H 1.09000 * 113.60884 * 105.46955 * 24 15 14 37 37 H 1.09004 * 113.61592 * 270.88333 * 25 24 15 38 38 H 1.09003 * 113.68858 * 140.00028 * 25 24 15 39 39 H 1.09002 * 113.61816 * 220.02105 * 26 25 24 40 40 H 1.09001 * 113.69028 * 89.12062 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2851 2.3933 -0.0005 5 6 1.9043 3.5933 -0.0011 6 7 3.2619 3.6778 -0.0016 7 6 4.0350 2.5511 -0.0011 8 6 3.4225 1.2888 0.0005 9 7 5.3181 2.9150 -0.0012 10 6 5.4113 4.2343 -0.0077 11 6 4.1287 4.7602 -0.0019 12 6 3.7745 6.1291 -0.0024 13 8 4.6426 6.9824 -0.0027 14 8 2.4735 6.4896 -0.0081 15 6 2.1873 7.8842 -0.1320 16 6 2.8867 8.5233 -1.3038 17 1 3.6128 9.3055 -1.1384 18 6 2.5996 8.1095 -2.5874 19 7 1.8199 7.0687 -2.7837 20 14 3.3181 9.0270 -4.0473 21 1 4.8008 8.9823 -3.9791 22 1 2.8605 8.3882 -5.3074 23 1 2.8636 10.4404 -4.0159 24 6 2.3466 8.6649 1.1834 25 6 1.0811 9.4418 0.7840 26 6 0.6874 8.2145 -0.0547 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2063 2.3428 -0.0005 31 1 1.3140 4.4977 -0.0011 32 1 4.0221 0.3905 0.0014 33 1 6.3289 4.8040 -0.0135 34 1 1.6764 6.7330 -3.6824 35 1 2.2186 8.0501 2.0743 36 1 3.2447 9.2816 1.2191 37 1 1.2848 10.3312 0.1875 38 1 0.4055 9.6365 1.6170 39 1 0.2459 8.4677 -1.0186 40 1 0.1055 7.4758 0.4965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821006279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:18:22 Heat of formation + Delta-G solvation = -3.128949 kcal Electronic energy + Delta-G solvation = -26877.816178 eV Core-core repulsion = 23046.813249 eV Total energy + Delta-G solvation = -3831.002928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.59179 -39.70377 -39.22400 -37.10914 -36.25351 -34.25749 -33.05102 -32.32026 -30.31996 -29.17483 -27.25424 -26.20549 -24.65065 -24.28545 -23.63282 -22.59316 -21.74455 -20.11875 -18.66955 -18.13413 -17.91735 -17.08464 -16.44461 -16.22616 -15.59439 -15.51334 -15.15566 -14.82827 -14.76816 -14.22689 -14.12065 -13.83369 -13.63796 -13.31707 -12.96410 -12.66881 -12.31585 -12.15987 -11.66996 -11.49981 -11.43953 -11.28457 -11.05259 -10.92441 -10.50652 -10.34060 -10.08479 -10.04081 -9.88325 -9.86566 -9.49446 -8.86479 -8.80358 -8.59035 -8.55280 -7.44485 -6.17157 -4.25273 0.80715 1.04912 2.61449 2.66616 2.90027 3.26574 3.30572 3.35542 3.58660 3.91284 4.23503 4.34044 4.48164 4.55826 4.71612 4.86631 4.91812 5.02136 5.12426 5.15932 5.23306 5.61715 5.66534 5.71070 5.73224 5.86025 5.90902 5.98459 6.17241 6.33274 6.41509 6.49582 6.55561 6.73830 6.84550 7.00430 7.03802 7.16720 7.21419 7.49795 7.71305 7.82950 7.96139 8.30269 8.76799 9.15908 9.43438 10.87583 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.004528 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.242480 B = 6182.719027 C = 6404.816732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.155 3.845 4 C -0.227 4.227 5 C 0.139 3.861 6 N -0.344 5.344 7 C 0.272 3.728 8 C -0.152 4.152 9 N -0.508 5.508 10 C 0.129 3.871 11 C -0.112 4.112 12 C 0.547 3.453 13 O -0.493 6.493 14 O -0.351 6.351 15 C 0.240 3.760 16 C -0.509 4.509 17 H 0.068 0.932 18 C 0.075 3.925 19 N -0.869 5.869 20 Si 0.893 3.107 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.162 4.162 25 C -0.130 4.130 26 C -0.108 4.108 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.158 0.842 31 H 0.187 0.813 32 H 0.158 0.842 33 H 0.195 0.805 34 H 0.262 0.738 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 -10.960 6.069 13.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.104 3.896 4 C -0.248 4.248 5 C 0.013 3.987 6 N -0.018 5.018 7 C 0.033 3.967 8 C -0.173 4.173 9 N -0.229 5.229 10 C -0.028 4.028 11 C -0.222 4.222 12 C 0.391 3.609 13 O -0.381 6.381 14 O -0.267 6.267 15 C 0.205 3.795 16 C -0.546 4.546 17 H 0.086 0.914 18 C -0.130 4.130 19 N -0.506 5.506 20 Si 0.720 3.280 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.200 4.200 25 C -0.167 4.167 26 C -0.146 4.146 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.176 0.824 31 H 0.204 0.796 32 H 0.175 0.825 33 H 0.211 0.789 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.827 -11.381 5.945 13.717 hybrid contribution -0.563 1.171 -1.026 1.656 sum -5.390 -10.210 4.919 12.550 Atomic orbital electron populations 1.23161 0.77728 1.04281 1.01908 1.86010 1.21834 1.25840 1.88217 1.18838 0.91545 0.84360 0.94900 1.21017 1.01504 0.90416 1.11851 1.21947 0.81633 1.00909 0.94162 1.42869 1.06122 1.08538 1.44237 1.20525 0.87112 0.86903 1.02162 1.19254 0.91160 0.94805 1.12111 1.70587 1.14132 1.12973 1.25226 1.23078 0.95646 0.89529 0.94545 1.20022 0.89914 0.86425 1.25869 1.17604 0.83038 0.85714 0.74539 1.90834 1.50576 1.50682 1.46055 1.86031 1.25341 1.33493 1.81860 1.20749 0.92662 0.74260 0.91793 1.20924 1.23620 1.21005 0.89058 0.91362 1.25014 0.94093 0.94876 0.99007 1.69987 1.36062 1.22530 1.22047 0.86621 0.79907 0.80170 0.81290 1.19889 1.21246 1.19869 1.23575 0.98027 0.99684 0.98707 1.22503 0.97413 0.97884 0.98947 1.22917 0.96759 0.95356 0.99524 0.92109 0.87954 0.92219 0.82422 0.79630 0.82486 0.78864 0.92812 0.92196 0.91883 0.90203 0.93040 0.90763 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.15 16 2 O -0.31 -3.33 10.49 -18.60 -0.20 -3.52 16 3 C 0.16 1.98 6.72 -38.72 -0.26 1.72 16 4 C -0.23 -2.81 8.98 -39.77 -0.36 -3.17 16 5 C 0.14 2.21 10.51 -16.84 -0.18 2.04 16 6 N -0.34 -6.38 2.97 -60.22 -0.18 -6.56 16 7 C 0.27 4.80 7.76 -155.99 -1.21 3.59 16 8 C -0.15 -2.19 10.09 -38.89 -0.39 -2.59 16 9 N -0.51 -9.50 11.25 -12.29 -0.14 -9.63 16 10 C 0.13 2.47 11.60 -17.22 -0.20 2.27 16 11 C -0.11 -2.36 6.84 -83.43 -0.57 -2.93 16 12 C 0.55 13.07 7.28 31.93 0.23 13.30 16 13 O -0.49 -12.85 15.23 -19.45 -0.30 -13.14 16 14 O -0.35 -8.36 7.73 -41.33 -0.32 -8.68 16 15 C 0.24 5.78 0.47 -90.96 -0.04 5.74 16 16 C -0.51 -13.67 6.28 -34.44 -0.22 -13.89 16 17 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 18 C 0.08 2.02 5.28 -17.82 -0.09 1.92 16 19 N -0.87 -23.59 12.79 55.43 0.71 -22.88 16 20 Si 0.89 21.28 29.55 -169.99 -5.02 16.25 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.16 -3.45 7.20 -25.92 -0.19 -3.64 16 25 C -0.13 -2.50 7.80 -25.92 -0.20 -2.70 16 26 C -0.11 -2.31 7.28 -25.92 -0.19 -2.50 16 27 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 30 H 0.16 1.40 6.39 -52.49 -0.34 1.07 16 31 H 0.19 3.08 6.59 -52.49 -0.35 2.74 16 32 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 33 H 0.19 3.24 8.06 -52.49 -0.42 2.81 16 34 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.39 8.09 -51.93 -0.42 0.97 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.72 7.98 -51.93 -0.41 1.31 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -31.79 342.60 -7.97 -39.76 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.82 Total: 2.91 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -2.87 Total: 0.33 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.39 Total: -39.07 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.81 Total: -25.35 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.79 -7.97 -39.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821006279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.633 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds