Wall clock time and date at job start Fri Apr 10 2020 23:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35635 * 117.00046 * 2 1 4 4 C 1.40749 * 120.33062 * 359.97438 * 3 2 1 5 5 C 1.35027 * 120.03492 * 180.02562 * 4 3 2 6 6 N 1.36020 * 120.85932 * 0.02562 * 5 4 3 7 7 C 1.36646 * 120.89291 * 359.97438 * 6 5 4 8 8 C 1.37994 * 120.33531 * 179.97438 * 3 2 1 9 9 N 1.33367 * 108.62162 * 180.02562 * 7 6 5 10 10 C 1.32268 * 109.87601 * 359.72818 * 9 7 6 11 11 C 1.38625 * 108.24774 * 0.43915 * 10 9 7 12 12 C 1.41401 * 126.79735 * 179.82956 * 11 10 9 13 13 O 1.21733 * 120.00144 * 359.69071 * 12 11 10 14 14 O 1.35004 * 119.99573 * 179.41718 * 12 11 10 15 15 C 1.42904 * 116.99732 * 185.57281 * 14 12 11 16 16 C 1.50694 * 112.85090 * 51.87281 * 15 14 12 17 17 H 1.07999 * 120.00343 * 242.80189 * 16 15 14 18 18 C 1.37882 * 120.00031 * 62.80280 * 16 15 14 19 19 N 1.31519 * 119.99493 * 353.11251 * 18 16 15 20 20 Si 1.86799 * 120.00194 * 173.11030 * 18 16 15 21 21 H 1.48495 * 109.47183 * 59.99692 * 20 18 16 22 22 H 1.48499 * 109.47301 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46726 * 300.00008 * 20 18 16 24 24 C 1.53784 * 113.61207 * 280.56631 * 15 14 12 25 25 C 1.53778 * 87.07997 * 220.02122 * 24 15 14 26 26 C 1.53775 * 87.08398 * 25.43409 * 25 24 15 27 27 H 1.08994 * 109.46881 * 60.00389 * 1 2 3 28 28 H 1.08997 * 109.46914 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46911 * 300.00510 * 1 2 3 30 30 H 1.08000 * 119.98645 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.57148 * 180.02562 * 5 4 3 32 32 H 1.08002 * 120.38942 * 359.97438 * 8 3 2 33 33 H 1.08002 * 125.87530 * 180.27166 * 10 9 7 34 34 H 0.97001 * 119.99301 * 185.02346 * 19 18 16 35 35 H 1.08998 * 113.61833 * 334.57375 * 24 15 14 36 36 H 1.09000 * 113.60884 * 105.46955 * 24 15 14 37 37 H 1.09004 * 113.61592 * 270.88333 * 25 24 15 38 38 H 1.09003 * 113.68858 * 140.00028 * 25 24 15 39 39 H 1.09002 * 113.61816 * 220.02105 * 26 25 24 40 40 H 1.09001 * 113.69028 * 89.12062 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2851 2.3933 -0.0005 5 6 1.9043 3.5933 -0.0011 6 7 3.2619 3.6778 -0.0016 7 6 4.0350 2.5511 -0.0011 8 6 3.4225 1.2888 0.0005 9 7 5.3181 2.9150 -0.0012 10 6 5.4113 4.2343 -0.0077 11 6 4.1287 4.7602 -0.0019 12 6 3.7745 6.1291 -0.0024 13 8 4.6426 6.9824 -0.0027 14 8 2.4735 6.4896 -0.0081 15 6 2.1873 7.8842 -0.1320 16 6 2.8867 8.5233 -1.3038 17 1 3.6128 9.3055 -1.1384 18 6 2.5996 8.1095 -2.5874 19 7 1.8199 7.0687 -2.7837 20 14 3.3181 9.0270 -4.0473 21 1 4.8008 8.9823 -3.9791 22 1 2.8605 8.3882 -5.3074 23 1 2.8636 10.4404 -4.0159 24 6 2.3466 8.6649 1.1834 25 6 1.0811 9.4418 0.7840 26 6 0.6874 8.2145 -0.0547 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2063 2.3428 -0.0005 31 1 1.3140 4.4977 -0.0011 32 1 4.0221 0.3905 0.0014 33 1 6.3289 4.8040 -0.0135 34 1 1.6764 6.7330 -3.6824 35 1 2.2186 8.0501 2.0743 36 1 3.2447 9.2816 1.2191 37 1 1.2848 10.3312 0.1875 38 1 0.4055 9.6365 1.6170 39 1 0.2459 8.4677 -1.0186 40 1 0.1055 7.4758 0.4965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821006279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:18:21 Heat of formation + Delta-G solvation = -20.911745 kcal Electronic energy + Delta-G solvation = -26878.587297 eV Core-core repulsion = 23046.813249 eV Total energy + Delta-G solvation = -3831.774048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.93501 -41.13407 -40.55782 -38.82652 -37.49691 -36.04399 -34.38731 -34.26420 -31.54017 -30.44141 -28.28689 -27.92591 -26.36605 -25.83763 -24.95024 -24.09151 -23.05844 -21.63413 -20.48893 -19.63745 -18.97074 -18.50099 -17.91740 -17.45190 -17.07738 -16.83704 -16.82230 -16.54041 -15.92636 -15.89524 -15.60666 -15.34563 -15.06479 -14.70786 -14.34273 -14.09773 -13.52344 -13.42387 -13.14818 -13.02094 -12.96416 -12.79472 -12.66354 -12.33789 -12.20297 -12.14622 -11.88277 -11.63665 -11.52267 -11.25824 -11.02850 -10.79032 -10.53159 -10.38192 -10.07010 -8.77268 -8.20666 -6.32741 -0.43408 -0.23704 1.20536 1.33399 1.34648 1.36518 1.42657 2.00082 2.22317 2.34302 2.35807 2.57353 3.11880 3.29286 3.38994 3.49863 3.83178 3.93045 4.01834 4.05008 4.22966 4.27682 4.38302 4.42123 4.46571 4.52165 4.71139 4.81411 4.84380 4.87193 4.90551 4.96709 5.12897 5.17002 5.31668 5.37872 5.44068 5.63869 5.78996 5.83365 5.94405 6.14745 6.42514 6.54672 6.67367 7.29000 7.42003 8.82308 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.004528 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.242480 B = 6182.719027 C = 6404.816732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.309 6.309 3 C 0.180 3.820 4 C -0.195 4.195 5 C 0.109 3.891 6 N -0.348 5.348 7 C 0.272 3.728 8 C -0.165 4.165 9 N -0.526 5.526 10 C 0.139 3.861 11 C -0.161 4.161 12 C 0.545 3.455 13 O -0.533 6.533 14 O -0.350 6.350 15 C 0.213 3.787 16 C -0.521 4.521 17 H 0.045 0.955 18 C 0.037 3.963 19 N -0.885 5.885 20 Si 0.939 3.061 21 H -0.286 1.286 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.158 4.158 25 C -0.111 4.111 26 C -0.101 4.101 27 H 0.071 0.929 28 H 0.128 0.872 29 H 0.076 0.924 30 H 0.200 0.800 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.206 0.794 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.994 -13.035 6.541 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.127 3.873 4 C -0.215 4.215 5 C -0.017 4.017 6 N -0.021 5.021 7 C 0.033 3.967 8 C -0.187 4.187 9 N -0.247 5.247 10 C -0.021 4.021 11 C -0.270 4.270 12 C 0.392 3.608 13 O -0.425 6.425 14 O -0.266 6.266 15 C 0.178 3.822 16 C -0.558 4.558 17 H 0.063 0.937 18 C -0.166 4.166 19 N -0.522 5.522 20 Si 0.765 3.235 21 H -0.212 1.212 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.196 4.196 25 C -0.148 4.148 26 C -0.139 4.139 27 H 0.089 0.911 28 H 0.146 0.854 29 H 0.095 0.905 30 H 0.217 0.783 31 H 0.192 0.808 32 H 0.193 0.807 33 H 0.222 0.778 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.246 -13.478 6.420 16.594 hybrid contribution 0.026 1.529 -1.133 1.903 sum -7.219 -11.949 5.287 14.928 Atomic orbital electron populations 1.23610 0.75071 1.06614 1.03227 1.86055 1.24428 1.24338 1.87215 1.18868 0.91103 0.85299 0.92027 1.21465 1.03385 0.88779 1.07889 1.22120 0.80785 1.02058 0.96727 1.42860 1.06900 1.07922 1.44419 1.21017 0.86931 0.87647 1.01067 1.19522 0.92392 0.94045 1.12732 1.70592 1.15050 1.12463 1.26636 1.23326 0.95664 0.89936 0.93132 1.19704 0.91135 0.85929 1.30253 1.17987 0.82613 0.86708 0.73499 1.90788 1.51175 1.52019 1.48472 1.86020 1.25472 1.33201 1.81897 1.21019 0.94302 0.74528 0.92326 1.20999 1.23377 1.20828 0.90627 0.93705 1.25548 0.94656 0.95568 1.00783 1.70052 1.36852 1.23160 1.22148 0.85910 0.78418 0.79938 0.79256 1.21211 1.20412 1.18695 1.23530 0.98500 0.99577 0.98009 1.22424 0.96505 0.96460 0.99430 1.22868 0.94995 0.96846 0.99187 0.91053 0.85405 0.90530 0.78296 0.80768 0.80687 0.77765 0.92976 0.90737 0.93607 0.90861 0.89053 0.92950 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.31 -5.33 10.49 -89.49 -0.94 -6.27 16 3 C 0.18 3.98 6.72 22.83 0.15 4.13 16 4 C -0.19 -4.20 8.98 22.14 0.20 -4.00 16 5 C 0.11 3.36 10.51 83.30 0.88 4.23 16 6 N -0.35 -12.99 2.97 -344.45 -1.02 -14.01 16 7 C 0.27 9.45 7.76 133.85 1.04 10.49 16 8 C -0.17 -4.43 10.09 22.72 0.23 -4.20 16 9 N -0.53 -19.86 11.25 -192.81 -2.17 -22.03 16 10 C 0.14 5.50 11.60 84.72 0.98 6.49 16 11 C -0.16 -7.02 6.84 38.93 0.27 -6.75 16 12 C 0.54 27.24 7.28 68.60 0.50 27.74 16 13 O -0.53 -29.35 15.23 19.07 0.29 -29.06 16 14 O -0.35 -17.16 7.73 -59.23 -0.46 -17.61 16 15 C 0.21 10.47 0.47 -11.01 -0.01 10.47 16 16 C -0.52 -28.94 6.28 25.60 0.16 -28.78 16 17 H 0.04 2.63 7.82 -2.91 -0.02 2.61 16 18 C 0.04 2.05 5.28 84.66 0.45 2.50 16 19 N -0.88 -48.81 12.79 21.45 0.27 -48.54 16 20 Si 0.94 44.49 29.55 68.60 2.03 46.52 16 21 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 24 C -0.16 -6.76 7.20 31.12 0.22 -6.54 16 25 C -0.11 -4.11 7.80 31.12 0.24 -3.86 16 26 C -0.10 -4.29 7.28 31.12 0.23 -4.06 16 27 H 0.07 0.51 7.68 -2.39 -0.02 0.49 16 28 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 0.44 7.68 -2.39 -0.02 0.42 16 30 H 0.20 2.55 6.39 -2.91 -0.02 2.53 16 31 H 0.18 5.78 6.59 -2.91 -0.02 5.77 16 32 H 0.18 3.98 8.06 -2.91 -0.02 3.96 16 33 H 0.21 7.23 8.06 -2.91 -0.02 7.21 16 34 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 35 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.05 2.07 8.09 -2.39 -0.02 2.05 16 37 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 38 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.05 2.43 7.98 -2.39 -0.02 2.41 16 40 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -71.92 342.60 5.73 -66.19 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.07 Total: 15.79 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 6.65 Total: 9.03 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -2.92 Total: -84.58 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -1.11 Total: -52.95 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -71.92 5.73 -66.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821006279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.278 kcal (2) G-P(sol) polarization free energy of solvation -71.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds