Wall clock time and date at job start Fri Apr 10 2020 23:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99901 * 2 1 4 4 H 1.48508 * 109.46932 * 239.99833 * 3 2 1 5 5 H 1.48496 * 109.47088 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47694 * 119.99544 * 3 2 1 7 7 C 1.37882 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99726 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99655 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46624 * 180.02562 * 9 7 2 11 11 C 1.34973 * 125.97780 * 125.02255 * 10 9 7 12 12 C 1.35234 * 107.86121 * 179.69071 * 11 10 9 13 13 C 1.40413 * 107.87136 * 0.42214 * 12 11 10 14 14 N 1.40153 * 125.97622 * 179.82853 * 13 12 11 15 15 C 1.34784 * 119.99913 * 359.72138 * 14 13 12 16 16 O 1.21289 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99728 * 179.97438 * 15 14 13 18 18 O 1.42899 * 109.46785 * 179.97438 * 17 15 14 19 19 C 1.42905 * 113.99778 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.46972 * 180.02562 * 19 18 17 21 21 C 1.38654 * 120.79058 * 269.72293 * 20 19 18 22 22 C 1.38199 * 119.16218 * 179.80010 * 21 20 19 23 23 N 1.31872 * 120.76598 * 0.48658 * 22 21 20 24 24 C 1.31867 * 121.72568 * 359.73700 * 23 22 21 25 25 C 1.38211 * 120.76480 * 0.03137 * 24 23 22 26 26 N 1.31219 * 108.04578 * 359.57080 * 13 12 11 27 27 H 0.96993 * 120.00156 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47620 * 60.00245 * 9 7 2 29 29 H 1.08993 * 109.47307 * 299.99455 * 9 7 2 30 30 H 1.08001 * 126.06902 * 359.97164 * 11 10 9 31 31 H 1.08006 * 126.06807 * 180.26139 * 12 11 10 32 32 H 0.96996 * 120.00198 * 179.71828 * 14 13 12 33 33 H 1.08997 * 109.47198 * 59.99898 * 17 15 14 34 34 H 1.08997 * 109.47040 * 299.99932 * 17 15 14 35 35 H 1.09000 * 109.47187 * 300.00233 * 19 18 17 36 36 H 1.09001 * 109.46558 * 60.00281 * 19 18 17 37 37 H 1.08000 * 120.41963 * 359.97438 * 21 20 19 38 38 H 1.08005 * 119.61842 * 180.20536 * 22 21 20 39 39 H 1.07994 * 119.62246 * 180.02562 * 24 23 22 40 40 H 1.07996 * 120.41847 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 2.2413 -4.6222 0.8967 12 6 3.2560 -5.4461 0.5495 13 6 3.8688 -4.9155 -0.5970 14 7 4.9648 -5.4669 -1.2746 15 6 5.5283 -6.6073 -0.8291 16 8 5.0873 -7.1561 0.1585 17 6 6.7064 -7.2004 -1.5581 18 8 7.1215 -8.3977 -0.8977 19 6 8.2384 -9.0432 -1.5126 20 6 8.5880 -10.2879 -0.7382 21 6 9.4991 -10.2416 0.3059 22 6 9.7919 -11.4026 0.9961 23 7 9.2232 -12.5455 0.6655 24 6 8.3558 -12.6277 -0.3243 25 6 8.0105 -11.5075 -1.0566 26 7 3.2324 -3.8162 -0.9262 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 1.5764 -4.7518 1.7379 31 1 3.5454 -6.3503 1.0644 32 1 5.3177 -5.0277 -2.0642 33 1 7.5285 -6.4847 -1.5629 34 1 6.4199 -7.4315 -2.5841 35 1 7.9832 -9.3130 -2.5374 36 1 9.0922 -8.3658 -1.5171 37 1 9.9720 -9.3096 0.5782 38 1 10.4981 -11.3744 1.8129 39 1 7.9102 -13.5813 -0.5658 40 1 7.2992 -11.5812 -1.8658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771702222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:17:57 Heat of formation + Delta-G solvation = 22.133244 kcal Electronic energy + Delta-G solvation = -24045.675308 eV Core-core repulsion = 20248.060581 eV Total energy + Delta-G solvation = -3797.614726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.22680 -41.12773 -40.63340 -38.60908 -36.22979 -35.28072 -34.20677 -32.88643 -32.12963 -30.99718 -29.86864 -28.40805 -27.19572 -24.94875 -24.40594 -23.02290 -22.96920 -21.88555 -20.98944 -18.70247 -18.53392 -18.28588 -17.71035 -17.57767 -17.39202 -16.96944 -16.77747 -16.50761 -16.22042 -15.92987 -15.47194 -15.27822 -14.73374 -14.56353 -14.53485 -14.23559 -14.01637 -13.83600 -13.69938 -13.23802 -12.93755 -12.76968 -12.70334 -12.44162 -12.28467 -12.08057 -11.63427 -11.40867 -10.91915 -10.74869 -10.71993 -10.67927 -10.45173 -10.07356 -9.77832 -9.14445 -8.32946 -6.47221 0.14687 0.21472 0.92424 1.24964 1.38436 1.40701 1.43604 1.50268 2.15912 2.20307 2.36500 2.74856 2.98912 3.14098 3.52579 3.60749 3.81458 3.82623 3.99045 4.15001 4.22435 4.22751 4.26665 4.29909 4.46862 4.48667 4.72701 4.75464 4.88200 4.90385 4.91622 5.00746 5.01936 5.14116 5.35822 5.56273 5.77270 5.79077 5.90414 5.96595 6.24466 6.31739 6.64106 6.98834 7.01839 7.12661 7.22654 8.74539 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.001898 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.272103 B =14751.923437 C =15030.061248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.053 0.947 9 C 0.272 3.728 10 N -0.343 5.343 11 C 0.056 3.944 12 C -0.297 4.297 13 C 0.266 3.734 14 N -0.620 5.620 15 C 0.515 3.485 16 O -0.542 6.542 17 C 0.059 3.941 18 O -0.391 6.391 19 C 0.099 3.901 20 C -0.061 4.061 21 C -0.157 4.157 22 C 0.081 3.919 23 N -0.513 5.513 24 C 0.081 3.919 25 C -0.156 4.156 26 N -0.342 5.342 27 H 0.273 0.727 28 H 0.023 0.977 29 H 0.058 0.942 30 H 0.200 0.800 31 H 0.163 0.837 32 H 0.429 0.571 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.155 0.845 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.408 -19.558 -5.601 28.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.072 0.928 9 C 0.153 3.847 10 N -0.125 5.125 11 C -0.092 4.092 12 C -0.328 4.328 13 C 0.012 3.988 14 N -0.272 5.272 15 C 0.302 3.698 16 O -0.416 6.416 17 C -0.020 4.020 18 O -0.310 6.310 19 C 0.023 3.977 20 C -0.070 4.070 21 C -0.176 4.176 22 C -0.075 4.075 23 N -0.223 5.223 24 C -0.075 4.075 25 C -0.176 4.176 26 N -0.173 5.173 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.217 0.783 31 H 0.180 0.820 32 H 0.267 0.733 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.172 0.828 38 H 0.192 0.808 39 H 0.193 0.807 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 18.923 -19.628 -5.097 27.737 hybrid contribution -0.047 1.315 -0.270 1.343 sum 18.877 -18.313 -5.367 26.842 Atomic orbital electron populations 1.69988 1.07237 1.28848 1.49823 1.25758 0.95860 1.02775 0.93876 0.85387 0.78263 0.77762 0.78941 1.19681 1.19892 1.19528 1.21366 0.93411 0.90902 1.52971 0.92830 1.19350 0.85681 0.81502 0.98140 1.48850 1.23874 1.20288 1.19515 1.23150 1.00505 0.88858 0.96734 1.21705 1.02403 1.06417 1.02269 1.19412 0.91718 0.93180 0.94502 1.42422 1.28695 1.25179 1.30890 1.21260 0.84789 0.79015 0.84714 1.90664 1.63173 1.60636 1.27166 1.22232 0.94495 0.88725 0.96512 1.88030 1.50145 1.38539 1.54273 1.21576 0.89282 0.90983 0.95836 1.20307 0.95374 0.95163 0.96109 1.22375 0.98824 1.00890 0.95535 1.23177 0.97766 0.87688 0.98915 1.67678 1.09182 1.29433 1.16013 1.23186 0.93617 0.99845 0.90881 1.22379 1.00279 0.92977 1.01930 1.77245 1.04634 1.18062 1.17352 0.91839 0.95941 0.92456 0.78343 0.81953 0.73274 0.85926 0.85756 0.89115 0.89209 0.82774 0.80783 0.80733 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.87 13.29 21.45 0.28 -51.58 16 2 C 0.02 0.97 5.46 84.66 0.46 1.44 16 3 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -30.69 9.24 25.60 0.24 -30.46 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.06 6.26 85.63 0.54 14.59 16 10 N -0.34 -16.07 3.67 -351.86 -1.29 -17.36 16 11 C 0.06 2.23 11.44 83.52 0.96 3.19 16 12 C -0.30 -11.72 9.61 22.11 0.21 -11.51 16 13 C 0.27 10.37 8.11 133.33 1.08 11.45 16 14 N -0.62 -16.97 5.45 -307.51 -1.68 -18.65 16 15 C 0.51 13.20 7.87 87.66 0.69 13.89 16 16 O -0.54 -19.24 13.63 15.98 0.22 -19.02 16 17 C 0.06 0.79 6.42 71.24 0.46 1.25 16 18 O -0.39 -7.20 9.86 -129.94 -1.28 -8.49 16 19 C 0.10 1.03 6.11 71.24 0.44 1.46 16 20 C -0.06 -0.89 5.55 -19.67 -0.11 -1.00 16 21 C -0.16 -2.24 9.82 22.36 0.22 -2.02 16 22 C 0.08 1.30 11.18 84.68 0.95 2.24 16 23 N -0.51 -10.02 10.36 -195.84 -2.03 -12.05 16 24 C 0.08 1.29 11.18 84.68 0.95 2.23 16 25 C -0.16 -2.21 9.82 22.36 0.22 -1.99 16 26 N -0.34 -15.58 12.42 -54.45 -0.68 -16.26 16 27 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 2.90 8.07 -2.39 -0.02 2.89 16 30 H 0.20 6.31 8.06 -2.91 -0.02 6.29 16 31 H 0.16 6.35 5.92 -2.91 -0.02 6.33 16 32 H 0.43 8.43 8.82 -92.71 -0.82 7.61 16 33 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.49 8.10 -2.39 -0.02 0.47 16 36 H 0.09 0.51 8.10 -2.39 -0.02 0.49 16 37 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 38 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 40 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -79.50 357.44 3.12 -76.37 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.26 Total: 17.15 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 7.29 Total: 4.77 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -5.39 Total: -115.90 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -1.06 Total: -27.51 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -79.50 3.12 -76.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771702222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.504 kcal (2) G-P(sol) polarization free energy of solvation -79.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds