Wall clock time and date at job start Fri Apr 10 2020 23:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38215 * 119.90473 * 2 1 4 4 C 1.38916 * 120.16522 * 179.97438 * 3 2 1 5 5 N 1.39963 * 120.01027 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00223 * 144.92138 * 5 4 3 7 7 O 1.21593 * 119.99500 * 4.63436 * 6 5 4 8 8 N 1.34771 * 120.00310 * 184.62805 * 6 5 4 9 9 C 1.46505 * 120.00265 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.46568 * 325.00103 * 9 8 6 11 11 C 1.53001 * 109.47028 * 84.99886 * 9 8 6 12 12 C 1.50692 * 109.46890 * 205.00168 * 9 8 6 13 13 H 1.08000 * 120.00525 * 0.02562 * 12 9 8 14 14 C 1.37882 * 119.99740 * 179.97438 * 12 9 8 15 15 N 1.31506 * 120.00146 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99941 * 179.97438 * 14 12 9 17 17 H 1.48493 * 109.47482 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46894 * 120.00422 * 16 14 12 19 19 H 1.48500 * 109.47069 * 240.00227 * 16 14 12 20 20 C 1.38687 * 119.97937 * 0.25303 * 4 3 2 21 21 C 1.39170 * 119.80721 * 359.51198 * 20 4 3 22 22 C 1.48479 * 120.08482 * 180.22998 * 21 20 4 23 23 N 1.34038 * 126.67647 * 179.97438 * 22 21 20 24 24 N 1.28982 * 107.27133 * 179.87045 * 23 22 21 25 25 N 1.28732 * 108.93906 * 0.39932 * 24 23 22 26 26 H 0.96998 * 125.33982 * 179.74459 * 25 24 23 27 27 N 1.28871 * 109.31815 * 359.74394 * 25 24 23 28 28 C 1.38051 * 119.90653 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46864 * 90.00458 * 1 2 3 30 30 H 1.09004 * 109.47110 * 210.00169 * 1 2 3 31 31 H 1.08998 * 109.47329 * 329.99813 * 1 2 3 32 32 H 1.07995 * 119.91793 * 0.02562 * 3 2 1 33 33 H 0.97004 * 119.99963 * 324.64708 * 5 4 3 34 34 H 0.97001 * 119.99961 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.46716 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.46894 * 300.00301 * 11 9 8 37 37 H 1.08993 * 109.46819 * 60.00328 * 11 9 8 38 38 H 0.97003 * 120.00683 * 179.97438 * 15 14 12 39 39 H 1.07999 * 120.10003 * 179.75110 * 20 4 3 40 40 H 1.07999 * 119.98715 * 0.02618 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.1981 0.0000 4 6 3.5852 1.2044 0.0005 5 7 4.2797 2.4196 0.0000 6 6 5.4431 2.5312 0.6711 7 8 5.9321 1.5551 1.2065 8 7 6.0646 3.7245 0.7488 9 6 7.3295 3.8457 1.4778 10 1 7.3179 3.1775 2.3390 11 6 8.4889 3.4670 0.5540 12 6 7.5046 5.2670 1.9471 13 1 6.7491 6.0060 1.7249 14 6 8.6290 5.6236 2.6611 15 7 9.5488 4.7236 2.9321 16 14 8.8465 7.3856 3.2421 17 1 7.6797 8.1966 2.8111 18 1 8.9451 7.4095 4.7237 19 1 10.0873 7.9511 2.6542 20 6 4.2836 0.0063 -0.0042 21 6 3.5888 -1.1995 0.0007 22 6 4.3304 -2.4859 0.0008 23 7 3.7989 -3.7164 0.0058 24 7 4.7778 -4.5563 0.0011 25 7 5.8878 -3.9043 0.0020 26 1 6.7723 -4.3024 0.0028 27 7 5.6394 -2.6398 0.0018 28 6 2.1952 -1.1967 -0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6532 2.1317 0.0004 33 1 3.9257 3.1804 -0.4867 34 1 5.6743 4.5033 0.3219 35 1 9.4300 3.5568 1.0967 36 1 8.3621 2.4390 0.2146 37 1 8.5004 4.1352 -0.3070 38 1 10.3400 4.9746 3.4340 39 1 5.3636 0.0089 -0.0079 40 1 1.6535 -2.1310 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609407881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:18:31 Heat of formation + Delta-G solvation = 92.955887 kcal Electronic energy + Delta-G solvation = -25273.768409 eV Core-core repulsion = 21511.517534 eV Total energy + Delta-G solvation = -3762.250875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.49868 -41.62025 -39.93453 -37.00931 -35.96260 -35.36855 -34.86077 -34.36993 -32.66605 -31.38037 -29.88825 -27.82135 -27.33110 -25.77415 -25.46949 -24.15051 -22.47544 -22.16398 -21.30548 -20.19638 -19.76138 -18.47812 -18.18184 -17.69171 -17.23231 -16.85825 -16.51864 -16.20427 -15.85091 -15.42653 -15.15267 -14.85486 -14.59044 -14.38203 -14.07646 -13.74285 -13.49364 -13.31964 -12.98848 -12.97131 -12.87591 -12.72201 -12.68939 -12.45496 -12.40231 -12.27903 -12.16632 -12.09345 -12.05951 -11.17597 -11.07623 -10.92958 -10.60302 -9.83726 -9.55712 -9.02157 -8.17122 -6.34191 -0.30232 0.14422 0.36794 1.26716 1.38158 1.45632 1.46346 1.58278 1.76582 2.19910 2.42609 2.65171 2.84055 3.12135 3.14243 3.48317 3.94947 4.02561 4.22550 4.33606 4.36377 4.45321 4.53399 4.73712 4.82554 4.93941 4.94482 5.01124 5.10282 5.25201 5.28651 5.41769 5.45189 5.52317 5.55720 5.60832 5.63005 5.68161 5.85921 6.03271 6.10104 6.27680 6.74158 7.07731 7.25337 7.34875 7.69730 8.89677 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.003069 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.820502 B = 9120.334221 C =10618.468745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.063 4.063 3 C -0.118 4.118 4 C 0.158 3.842 5 N -0.674 5.674 6 C 0.691 3.309 7 O -0.623 6.623 8 N -0.713 5.713 9 C 0.289 3.711 10 H -0.002 1.002 11 C -0.134 4.134 12 C -0.544 4.544 13 H 0.076 0.924 14 C 0.014 3.986 15 N -0.918 5.918 16 Si 0.974 3.026 17 H -0.258 1.258 18 H -0.285 1.285 19 H -0.279 1.279 20 C -0.112 4.112 21 C -0.017 4.017 22 C 0.212 3.788 23 N -0.283 5.283 24 N -0.052 5.052 25 N -0.204 5.204 26 H 0.493 0.507 27 N -0.307 5.307 28 C -0.097 4.097 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.163 0.837 33 H 0.425 0.575 34 H 0.405 0.595 35 H 0.066 0.934 36 H 0.010 0.990 37 H 0.041 0.959 38 H 0.265 0.735 39 H 0.117 0.883 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.547 -9.542 -9.515 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.064 4.064 3 C -0.140 4.140 4 C 0.063 3.937 5 N -0.324 5.324 6 C 0.391 3.609 7 O -0.504 6.504 8 N -0.365 5.365 9 C 0.185 3.815 10 H 0.016 0.984 11 C -0.193 4.193 12 C -0.582 4.582 13 H 0.094 0.906 14 C -0.186 4.186 15 N -0.556 5.556 16 Si 0.798 3.202 17 H -0.182 1.182 18 H -0.211 1.211 19 H -0.205 1.205 20 C -0.135 4.135 21 C -0.021 4.021 22 C -0.068 4.068 23 N -0.156 5.156 24 N -0.047 5.047 25 N -0.055 5.055 26 H 0.351 0.649 27 N -0.159 5.159 28 C -0.118 4.118 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.180 0.820 33 H 0.263 0.737 34 H 0.240 0.760 35 H 0.085 0.915 36 H 0.029 0.971 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.785 -11.024 -8.910 21.215 hybrid contribution 1.367 1.396 0.172 1.961 sum -14.418 -9.628 -8.738 19.415 Atomic orbital electron populations 1.20855 0.87483 1.04241 1.03906 1.19941 0.98036 0.90848 0.97599 1.21236 0.90445 1.00326 1.01972 1.17505 0.91457 0.84345 1.00419 1.42407 1.22513 1.13592 1.53862 1.16292 0.80790 0.84273 0.79533 1.90882 1.67708 1.38272 1.53504 1.45420 1.25509 1.08413 1.57187 1.18241 0.78463 0.95798 0.88950 0.98395 1.21920 1.02011 0.96364 0.99001 1.21566 1.06199 0.94567 1.35917 0.90600 1.25805 0.95189 1.02041 0.95612 1.70063 1.10276 1.35538 1.39759 0.85270 0.78445 0.78899 0.77542 1.18176 1.21127 1.20505 1.21177 1.00729 0.91038 1.00580 1.17172 0.92981 0.85946 1.05961 1.23854 0.86532 0.94681 1.01718 1.75994 1.22497 0.98150 1.18932 1.78762 0.88832 1.22218 1.14869 1.47775 1.12122 1.01188 1.44365 0.64857 1.75103 1.18310 1.00610 1.21913 1.21169 0.90931 0.99832 0.99872 0.89257 0.90381 0.89907 0.81980 0.73656 0.76012 0.91480 0.97111 0.94003 0.92577 0.86485 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.23 0.71 -0.43 16 2 C -0.06 -1.17 5.87 -19.92 -0.12 -1.29 16 3 C -0.12 -2.40 9.61 22.43 0.22 -2.18 16 4 C 0.16 4.53 6.29 38.11 0.24 4.77 16 5 N -0.67 -19.49 5.34 -317.26 -1.69 -21.18 16 6 C 0.69 27.98 8.37 179.06 1.50 29.48 16 7 O -0.62 -31.35 13.45 -4.01 -0.05 -31.40 16 8 N -0.71 -29.07 5.07 -461.41 -2.34 -31.41 16 9 C 0.29 14.94 2.56 44.24 0.11 15.05 16 10 H 0.00 -0.12 7.58 -2.39 -0.02 -0.13 16 11 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 12 C -0.54 -28.37 8.73 25.60 0.22 -28.15 16 13 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 14 C 0.01 0.72 5.30 84.66 0.45 1.17 16 15 N -0.92 -52.47 11.32 21.45 0.24 -52.23 16 16 Si 0.97 41.49 29.54 68.60 2.03 43.52 16 17 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 18 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 C -0.11 -3.80 8.34 22.60 0.19 -3.61 16 21 C -0.02 -0.50 5.87 -20.05 -0.12 -0.61 16 22 C 0.21 6.45 7.94 137.39 1.09 7.54 16 23 N -0.28 -7.96 12.23 -52.18 -0.64 -8.59 16 24 N -0.05 -1.26 13.47 37.02 0.50 -0.76 16 25 N -0.20 -4.39 7.90 37.02 0.29 -4.10 16 26 H 0.49 5.67 8.96 -347.54 -3.12 2.55 16 27 N -0.31 -9.19 12.08 -52.12 -0.63 -9.82 16 28 C -0.10 -2.22 9.35 22.49 0.21 -2.01 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.73 8.08 -2.38 -0.02 0.71 16 31 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 32 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.42 8.46 8.84 -92.71 -0.82 7.64 16 34 H 0.40 13.35 8.56 -92.71 -0.79 12.56 16 35 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 38 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 39 H 0.12 4.86 6.06 -2.91 -0.02 4.84 16 40 H 0.15 2.89 7.88 -2.91 -0.02 2.87 16 Total: -1.00 -76.13 347.86 -0.52 -76.64 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -3.59 Total: 25.76 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 5.37 Total: 13.58 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -4.27 Total: -128.10 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.05 Total: -31.40 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -76.13 -0.52 -76.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609407881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.599 kcal (2) G-P(sol) polarization free energy of solvation -76.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds