Wall clock time and date at job start Fri Apr 10 2020 23:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48499 * 109.46939 * 270.00362 * 3 2 1 5 5 H 1.48497 * 109.47083 * 150.00300 * 3 2 1 6 6 H 1.48496 * 109.47011 * 30.00260 * 3 2 1 7 7 C 1.39950 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99496 * 154.23404 * 7 2 1 9 9 C 1.41390 * 119.99727 * 334.22769 * 7 2 1 10 10 C 1.40709 * 120.24977 * 334.76856 * 9 7 2 11 11 C 1.37613 * 119.74614 * 179.67435 * 10 9 7 12 12 C 1.38639 * 120.25080 * 0.62672 * 11 10 9 13 13 C 1.50697 * 119.75248 * 179.69252 * 12 11 10 14 14 N 1.46893 * 109.47159 * 269.97709 * 13 12 11 15 15 C 1.46659 * 111.00032 * 295.40280 * 14 13 12 16 16 C 1.53362 * 110.38612 * 175.50423 * 15 14 13 17 17 C 1.52667 * 108.34380 * 58.19961 * 16 15 14 18 18 H 1.08997 * 109.47239 * 60.02813 * 17 16 15 19 19 C 1.52857 * 111.87846 * 181.55480 * 17 16 15 20 20 O 1.45687 * 107.56488 * 181.18102 * 19 17 16 21 21 C 1.34081 * 118.24386 * 317.57401 * 20 19 17 22 22 O 1.21507 * 118.14462 * 193.59456 * 21 20 19 23 23 N 1.34254 * 123.72318 * 13.59203 * 21 20 19 24 24 C 1.45502 * 121.31926 * 355.61335 * 23 21 20 25 25 H 1.08999 * 108.20868 * 267.03509 * 24 23 21 26 26 C 1.47191 * 111.00289 * 170.00123 * 14 13 12 27 27 C 1.38635 * 120.49536 * 359.66595 * 12 11 10 28 28 C 1.37612 * 120.25156 * 0.02562 * 27 12 11 29 29 H 0.96999 * 120.00514 * 174.23494 * 1 2 3 30 30 H 1.08002 * 120.12641 * 359.97438 * 10 9 7 31 31 H 1.08007 * 119.87959 * 180.31474 * 11 10 9 32 32 H 1.09002 * 109.46972 * 29.97961 * 13 12 11 33 33 H 1.08999 * 109.46771 * 149.97616 * 13 12 11 34 34 H 1.08998 * 109.31422 * 295.78515 * 15 14 13 35 35 H 1.08995 * 109.31687 * 55.22196 * 15 14 13 36 36 H 1.08997 * 109.69296 * 298.48336 * 16 15 14 37 37 H 1.08998 * 109.71905 * 177.92700 * 16 15 14 38 38 H 1.08999 * 109.83896 * 300.69641 * 19 17 16 39 39 H 1.09001 * 109.84251 * 61.60124 * 19 17 16 40 40 H 0.96999 * 119.34023 * 175.60736 * 23 21 20 41 41 H 1.09006 * 109.61822 * 305.06112 * 26 14 13 42 42 H 1.09007 * 109.61777 * 65.60678 * 26 14 13 43 43 H 1.08004 * 119.87491 * 180.02562 * 27 12 11 44 44 H 1.07998 * 120.13112 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 3.5398 1.4401 0.7000 6 1 1.4397 2.6526 0.7001 7 6 2.0079 -1.2120 -0.0005 8 1 3.0074 -1.2583 -0.4072 9 6 1.4063 -2.3758 0.5313 10 6 0.3950 -2.2697 1.5039 11 6 -0.1881 -3.4090 2.0097 12 6 0.2263 -4.6582 1.5739 13 6 -0.4152 -5.8986 2.1404 14 7 0.3297 -6.3361 3.3285 15 6 1.6931 -6.7434 2.9736 16 6 2.4925 -7.0906 4.2354 17 6 1.7613 -8.2082 4.9751 18 1 1.6859 -9.0828 4.3290 19 6 2.4724 -8.5930 6.2723 20 8 1.7162 -9.6782 6.8830 21 6 0.3780 -9.5951 6.8874 22 8 -0.2412 -10.3557 7.6047 23 7 -0.3168 -8.7190 6.1443 24 6 0.3551 -7.7148 5.3336 25 1 0.4425 -6.8029 5.9243 26 6 -0.3966 -7.3968 4.0455 27 6 1.2261 -4.7748 0.6206 28 6 1.8189 -3.6489 0.0964 29 1 -0.4851 -0.8357 -0.0844 30 1 0.0743 -1.2977 1.8487 31 1 -0.9681 -3.3299 2.7526 32 1 -1.4463 -5.6799 2.4181 33 1 -0.4008 -6.6897 1.3908 34 1 1.6505 -7.6162 2.3221 35 1 2.1875 -5.9274 2.4466 36 1 2.5660 -6.2125 4.8769 37 1 3.4914 -7.4267 3.9572 38 1 3.4868 -8.9265 6.0533 39 1 2.5021 -7.7367 6.9461 40 1 -1.2861 -8.7564 6.1478 41 1 -1.4034 -7.0539 4.2843 42 1 -0.4493 -8.2897 3.4224 43 1 1.5409 -5.7529 0.2881 44 1 2.5972 -3.7420 -0.6465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830900096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:18:06 Heat of formation + Delta-G solvation = -66.251190 kcal Electronic energy + Delta-G solvation = -26197.836269 eV Core-core repulsion = 22499.929249 eV Total energy + Delta-G solvation = -3697.907020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46356 -39.14227 -37.83303 -37.12632 -35.47087 -34.09077 -33.28025 -30.48976 -29.90921 -29.33083 -27.97434 -25.92358 -24.25741 -23.31932 -23.08520 -21.26959 -20.73933 -20.21331 -19.94091 -18.54061 -17.98697 -17.55116 -16.45535 -15.69023 -15.44746 -15.30408 -14.91339 -14.73486 -14.49887 -14.39989 -14.10774 -13.85321 -13.68988 -13.50923 -12.97660 -12.63223 -12.31022 -12.13506 -12.07454 -11.92198 -11.65791 -11.41632 -11.20484 -11.12108 -11.05832 -10.82567 -10.69947 -10.57501 -10.44973 -10.28314 -9.69634 -9.56986 -9.48611 -9.03141 -8.23817 -7.74890 -7.56563 -7.24369 -4.50521 2.35033 2.52267 2.65143 2.80649 3.09121 3.12075 3.21697 3.31258 3.92772 3.96252 4.00994 4.17243 4.47693 4.53885 4.61486 4.79629 4.93490 5.07522 5.11214 5.22901 5.33680 5.39920 5.43663 5.50578 5.60491 5.65973 5.75865 5.79589 5.99103 6.04724 6.10380 6.14210 6.21373 6.53131 6.70994 6.92797 7.06554 7.14390 7.15826 7.32403 7.38973 7.61723 7.69933 7.75462 7.87773 7.89939 8.13505 8.25000 8.68965 8.82205 9.98406 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028820 B = 0.002552 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.323897 B =10970.862127 C =11143.642580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.039 3.961 3 Si 1.065 2.935 4 H -0.277 1.277 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.075 0.925 9 C 0.100 3.900 10 C -0.223 4.223 11 C -0.057 4.057 12 C -0.225 4.225 13 C 0.126 3.874 14 N -0.532 5.532 15 C 0.055 3.945 16 C -0.104 4.104 17 C -0.141 4.141 18 H 0.088 0.912 19 C 0.068 3.932 20 O -0.344 6.344 21 C 0.660 3.340 22 O -0.541 6.541 23 N -0.725 5.725 24 C 0.135 3.865 25 H 0.088 0.912 26 C 0.053 3.947 27 C -0.072 4.072 28 C -0.230 4.230 29 H 0.300 0.700 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.027 0.973 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.419 0.581 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.084 0.916 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.521 -11.017 6.940 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.183 4.183 3 Si 0.889 3.111 4 H -0.203 1.203 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.093 0.907 9 C 0.097 3.903 10 C -0.243 4.243 11 C -0.076 4.076 12 C -0.226 4.226 13 C 0.000 4.000 14 N -0.257 5.257 15 C -0.073 4.073 16 C -0.142 4.142 17 C -0.160 4.160 18 H 0.106 0.894 19 C -0.006 4.006 20 O -0.255 6.255 21 C 0.413 3.587 22 O -0.426 6.426 23 N -0.393 5.393 24 C 0.029 3.971 25 H 0.106 0.894 26 C -0.075 4.075 27 C -0.091 4.091 28 C -0.250 4.250 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.134 0.866 39 H 0.101 0.899 40 H 0.257 0.743 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.409 -9.546 7.778 12.547 hybrid contribution -0.288 -2.191 -0.872 2.376 sum 2.121 -11.737 6.906 13.782 Atomic orbital electron populations 1.70430 1.08262 1.34366 1.28731 1.27018 0.95659 1.04345 0.91279 0.83648 0.75785 0.73734 0.77956 1.20267 1.20011 1.19784 1.20601 1.03279 0.94273 1.36736 0.90715 1.17675 0.90542 0.92501 0.89543 1.21136 1.04012 0.97049 1.02067 1.20406 0.97682 0.92273 0.97197 1.18720 1.05313 0.92634 1.05953 1.20670 0.96063 0.94757 0.88475 1.61706 1.02174 1.35444 1.26342 1.22132 0.89531 1.00080 0.95575 1.21503 0.98309 0.97093 0.97285 1.22137 0.95533 1.01087 0.97280 0.89374 1.23535 0.95260 0.88668 0.93167 1.86615 1.16948 1.46516 1.75461 1.17924 0.80833 0.80458 0.79473 1.91025 1.64153 1.44484 1.42986 1.45401 1.10948 1.35109 1.47793 1.21016 0.91644 0.91206 0.93215 0.89420 1.22134 0.97851 0.94204 0.93346 1.20386 0.95981 0.96281 0.96450 1.20889 1.06147 0.92654 1.05307 0.88651 0.87811 0.89307 0.91399 0.95664 0.95468 0.88390 0.90016 0.90305 0.86577 0.89933 0.74277 0.89872 0.94430 0.89788 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.46 12.31 55.55 0.68 -19.78 16 2 C 0.04 0.96 4.93 -17.34 -0.09 0.88 16 3 Si 1.07 20.86 30.00 -169.99 -5.10 15.76 16 4 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 7 C -0.52 -13.33 8.99 -37.74 -0.34 -13.66 16 8 H 0.07 1.87 7.96 -52.48 -0.42 1.45 16 9 C 0.10 2.52 5.30 -106.83 -0.57 1.95 16 10 C -0.22 -5.39 7.96 -38.88 -0.31 -5.70 16 11 C -0.06 -1.20 9.67 -39.66 -0.38 -1.58 16 12 C -0.22 -4.28 4.87 -104.33 -0.51 -4.79 16 13 C 0.13 1.89 5.13 -4.98 -0.03 1.87 16 14 N -0.53 -6.85 4.61 -236.12 -1.09 -7.94 16 15 C 0.05 0.66 5.09 -3.77 -0.02 0.64 16 16 C -0.10 -0.94 5.56 -26.71 -0.15 -1.08 16 17 C -0.14 -1.20 2.13 -90.72 -0.19 -1.39 16 18 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 19 C 0.07 0.54 6.69 37.08 0.25 0.78 16 20 O -0.34 -4.08 10.44 -38.96 -0.41 -4.49 16 21 C 0.66 8.51 8.53 53.82 0.46 8.97 16 22 O -0.54 -8.98 17.96 -19.43 -0.35 -9.33 16 23 N -0.72 -7.12 5.36 -59.77 -0.32 -7.44 16 24 C 0.13 1.24 2.86 -68.58 -0.20 1.05 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 C 0.05 0.54 5.22 -3.93 -0.02 0.52 16 27 C -0.07 -1.44 7.81 -39.66 -0.31 -1.75 16 28 C -0.23 -5.27 9.80 -38.87 -0.38 -5.65 16 29 H 0.30 7.90 6.70 -40.82 -0.27 7.63 16 30 H 0.10 2.63 6.49 -52.49 -0.34 2.29 16 31 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 33 H 0.03 0.37 8.07 -51.93 -0.42 -0.05 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 1.44 5.78 -51.93 -0.30 1.14 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.42 3.55 8.79 -40.82 -0.36 3.19 16 41 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 42 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 1.47 7.98 -52.48 -0.42 1.05 16 44 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -28.83 351.57 -10.44 -39.27 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.38 Total: 7.59 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.78 Total: -18.95 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: -0.73 Total: -35.15 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.76 Total: -13.81 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.10 Total: 15.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.83 -10.44 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830900096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.980 kcal (2) G-P(sol) polarization free energy of solvation -28.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds