Wall clock time and date at job start Fri Apr 10 2020 23:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46504 * 109.47349 * 295.00023 * 10 9 7 13 13 C 1.34776 * 120.00219 * 154.99866 * 12 10 9 14 14 O 1.21583 * 120.00057 * 359.97438 * 13 12 10 15 15 N 1.34781 * 119.99891 * 180.02562 * 13 12 10 16 16 C 1.46981 * 127.25549 * 0.02562 * 15 13 12 17 17 C 1.50577 * 107.13803 * 179.97438 * 16 15 13 18 18 C 1.30397 * 110.12022 * 0.02562 * 17 16 15 19 19 C 1.46980 * 127.25029 * 179.70737 * 15 13 12 20 20 H 1.08996 * 109.90674 * 60.65816 * 19 15 13 21 21 C 1.52994 * 109.90403 * 299.40703 * 19 15 13 22 22 O 1.42891 * 109.47605 * 295.00028 * 21 19 15 23 23 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 24 24 C 1.38239 * 120.00038 * 79.72172 * 23 10 9 25 25 C 1.38224 * 119.99999 * 179.79389 * 24 23 10 26 26 C 1.38237 * 120.00358 * 0.46474 * 25 24 23 27 27 C 1.38240 * 119.99440 * 359.77056 * 26 25 24 28 28 C 1.38233 * 120.00315 * 0.02562 * 27 26 25 29 29 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 31 31 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 32 32 H 0.97006 * 119.99491 * 334.99935 * 12 10 9 33 33 H 1.09004 * 109.90735 * 299.34661 * 16 15 13 34 34 H 1.09009 * 109.90304 * 60.40881 * 16 15 13 35 35 H 1.08001 * 124.94161 * 179.97438 * 17 16 15 36 36 H 1.07999 * 124.94445 * 180.02562 * 18 17 16 37 37 H 1.08994 * 109.47165 * 55.00437 * 21 19 15 38 38 H 1.09004 * 109.46757 * 175.00204 * 21 19 15 39 39 H 0.96700 * 114.00983 * 180.02562 * 22 21 19 40 40 H 1.07999 * 119.99523 * 0.02562 * 24 23 10 41 41 H 1.08008 * 120.00416 * 180.25298 * 25 24 23 42 42 H 1.07993 * 120.00582 * 179.78965 * 26 25 24 43 43 H 1.08005 * 119.99317 * 179.97438 * 27 26 25 44 44 H 1.08000 * 119.99807 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0061 -3.6541 -1.2513 13 6 4.2308 -4.2147 -1.2990 14 8 4.7042 -4.7268 -0.3031 15 7 4.9311 -4.2068 -2.4506 16 6 4.5171 -3.6352 -3.7399 17 6 5.6400 -3.8771 -4.7135 18 6 6.6167 -4.5086 -4.1239 19 6 6.2724 -4.7623 -2.6800 20 1 6.2684 -5.8347 -2.4849 21 6 7.2867 -4.0676 -1.7693 22 8 7.3867 -2.6891 -2.1320 23 6 1.4958 -4.9637 0.1244 24 6 0.8892 -5.5205 -0.9861 25 6 0.2056 -6.7165 -0.8734 26 6 0.1201 -7.3511 0.3518 27 6 0.7226 -6.7919 1.4632 28 6 1.4099 -5.5979 1.3497 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 0.8903 31 1 0.6246 -2.5571 -0.8897 32 1 2.6286 -3.2451 -2.0458 33 1 3.6099 -4.1277 -4.0900 34 1 4.3401 -2.5651 -3.6316 35 1 5.6366 -3.5726 -5.7497 36 1 7.5404 -4.8022 -4.6004 37 1 6.9591 -4.1477 -0.7329 38 1 8.2608 -4.5440 -1.8804 39 1 8.0138 -2.1854 -1.5952 40 1 0.9528 -5.0228 -1.9424 41 1 -0.2649 -7.1536 -1.7418 42 1 -0.4169 -8.2838 0.4406 43 1 0.6554 -7.2875 2.4205 44 1 1.8801 -5.1608 2.2181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883544469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:19:24 Heat of formation + Delta-G solvation = -42.910708 kcal Electronic energy + Delta-G solvation = -26869.187723 eV Core-core repulsion = 23172.292823 eV Total energy + Delta-G solvation = -3696.894900 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67897 -40.33744 -39.05507 -37.16364 -36.75769 -34.75685 -33.38647 -31.93706 -31.66058 -30.93328 -30.42153 -26.84350 -26.27086 -24.16188 -23.78336 -23.29755 -21.63428 -20.83976 -20.41723 -19.28543 -18.61598 -18.26710 -17.66050 -17.06127 -16.80257 -16.58176 -16.07039 -16.00056 -15.64396 -15.24426 -14.94925 -14.76028 -14.45843 -14.39816 -14.19416 -14.04437 -13.83330 -13.64041 -13.46472 -13.31441 -12.94157 -12.88390 -12.64142 -12.49372 -12.15248 -11.88675 -11.88280 -11.60528 -11.41141 -11.33706 -10.86642 -10.60732 -10.58380 -10.00596 -9.75596 -9.53332 -9.27502 -8.22055 -6.31771 0.50844 0.56144 1.28166 1.35816 1.38003 1.50307 1.58702 2.18515 2.38332 2.91068 3.08016 3.15627 3.32111 3.65057 3.86782 3.99021 4.03131 4.20593 4.22088 4.31716 4.32333 4.41455 4.49855 4.60146 4.62968 4.63784 4.66951 4.75532 4.78343 4.90883 5.12185 5.19201 5.22959 5.27642 5.40262 5.42809 5.61061 5.61411 5.64036 5.76300 5.87794 5.93535 6.12991 6.15595 6.20494 6.80117 6.82369 7.02348 7.36843 7.60176 8.88868 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.007557 B = 0.006303 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3704.519520 B = 4441.413156 C = 7130.272131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.527 4.527 8 H 0.047 0.953 9 C 0.039 3.961 10 C 0.220 3.780 11 H 0.055 0.945 12 N -0.709 5.709 13 C 0.729 3.271 14 O -0.631 6.631 15 N -0.632 5.632 16 C 0.115 3.885 17 C -0.154 4.154 18 C -0.149 4.149 19 C 0.167 3.833 20 H 0.091 0.909 21 C 0.070 3.930 22 O -0.579 6.579 23 C -0.099 4.099 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.132 4.132 29 H 0.265 0.735 30 H 0.008 0.992 31 H 0.011 0.989 32 H 0.401 0.599 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.175 0.825 36 H 0.176 0.824 37 H 0.028 0.972 38 H 0.084 0.916 39 H 0.390 0.610 40 H 0.116 0.884 41 H 0.146 0.854 42 H 0.153 0.847 43 H 0.145 0.855 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.637 -12.625 -9.376 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.565 4.565 8 H 0.065 0.935 9 C 0.002 3.998 10 C 0.114 3.886 11 H 0.073 0.927 12 N -0.361 5.361 13 C 0.431 3.569 14 O -0.513 6.513 15 N -0.370 5.370 16 C -0.007 4.007 17 C -0.172 4.172 18 C -0.167 4.167 19 C 0.063 3.937 20 H 0.109 0.891 21 C -0.009 4.009 22 O -0.386 6.386 23 C -0.100 4.100 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.140 4.140 28 C -0.151 4.151 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.030 0.970 32 H 0.235 0.765 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.193 0.807 36 H 0.193 0.807 37 H 0.047 0.953 38 H 0.102 0.898 39 H 0.238 0.762 40 H 0.134 0.866 41 H 0.164 0.836 42 H 0.170 0.830 43 H 0.163 0.837 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.306 -13.043 -8.985 18.370 hybrid contribution 0.438 1.687 0.549 1.828 sum 9.744 -11.356 -8.436 17.178 Atomic orbital electron populations 1.70070 1.07328 1.27684 1.51322 1.25746 0.95595 1.02529 0.94760 0.85539 0.78698 0.79651 0.77980 1.19828 1.19896 1.20444 1.21365 0.92713 0.91704 1.50711 0.93460 1.19129 0.93193 0.91038 0.96460 1.19600 0.91630 0.92056 0.85306 0.92711 1.44923 1.16187 1.60943 1.14073 1.15321 0.80715 0.79071 0.81789 1.90811 1.71481 1.54061 1.34915 1.47156 1.18588 1.62099 1.09180 1.20955 0.98902 0.98665 0.82224 1.23321 0.94231 0.99360 1.00261 1.23202 1.00813 1.00628 0.92054 1.20545 0.80596 0.97247 0.95341 0.89147 1.22442 0.98729 0.82722 0.96988 1.86463 1.68021 1.21666 1.62469 1.20481 0.98255 0.96401 0.94858 1.21016 0.98174 0.96786 0.97896 1.21423 0.98926 0.94854 0.99014 1.21470 0.99899 1.00935 0.92311 1.21390 0.97438 0.95033 1.00182 1.21166 1.00420 0.96632 0.96839 0.92644 0.97409 0.97028 0.76452 0.89806 0.91755 0.80733 0.80699 0.95317 0.89846 0.76175 0.86632 0.83612 0.82976 0.83721 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.69 13.29 21.45 0.28 -54.40 16 2 C 0.01 0.70 5.46 84.66 0.46 1.17 16 3 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.53 -29.71 8.84 25.60 0.23 -29.49 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 9 C 0.04 2.05 4.49 29.85 0.13 2.18 16 10 C 0.22 9.97 2.11 44.24 0.09 10.07 16 11 H 0.05 2.78 7.44 -2.38 -0.02 2.76 16 12 N -0.71 -29.10 4.01 -461.40 -1.85 -30.96 16 13 C 0.73 29.83 8.29 179.05 1.49 31.31 16 14 O -0.63 -29.83 15.11 -3.98 -0.06 -29.89 16 15 N -0.63 -20.56 3.06 -822.26 -2.52 -23.08 16 16 C 0.11 2.97 6.33 85.50 0.54 3.52 16 17 C -0.15 -2.89 10.87 26.23 0.28 -2.61 16 18 C -0.15 -2.79 9.63 26.24 0.25 -2.53 16 19 C 0.17 4.39 3.40 44.12 0.15 4.54 16 20 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 21 C 0.07 1.83 6.72 71.98 0.48 2.32 16 22 O -0.58 -15.68 13.06 -148.98 -1.95 -17.62 16 23 C -0.10 -3.97 4.91 -19.87 -0.10 -4.07 16 24 C -0.12 -4.24 9.32 22.27 0.21 -4.04 16 25 C -0.12 -3.56 10.05 22.27 0.22 -3.34 16 26 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 27 C -0.12 -3.64 10.05 22.27 0.22 -3.41 16 28 C -0.13 -4.91 9.67 22.27 0.22 -4.69 16 29 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.40 15.42 7.70 -92.70 -0.71 14.70 16 33 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.03 0.96 6.79 -2.39 -0.02 0.95 16 38 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.39 7.49 9.12 -74.06 -0.68 6.81 16 40 H 0.12 3.91 7.73 -2.91 -0.02 3.89 16 41 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 42 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 43 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 44 H 0.11 4.17 8.04 -2.91 -0.02 4.15 16 Total: -1.00 -75.81 371.60 0.67 -75.14 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.38 Total: 36.38 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 5.11 Total: -2.25 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -4.09 Total: -108.44 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -2.01 Total: -47.51 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -75.81 0.67 -75.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883544469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.227 kcal (2) G-P(sol) polarization free energy of solvation -75.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds