Wall clock time and date at job start Fri Apr 10 2020 23:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31528 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48500 * 109.46765 * 269.99740 * 3 2 1 5 5 H 1.48493 * 109.47135 * 29.99862 * 3 2 1 6 6 H 1.48496 * 109.46745 * 149.99857 * 3 2 1 7 7 C 1.38697 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00265 * 0.02562 * 7 2 1 9 9 O 1.34819 * 119.99828 * 179.97438 * 7 2 1 10 10 C 1.35522 * 117.00101 * 185.05480 * 9 7 2 11 11 C 1.38832 * 120.16038 * 354.39890 * 10 9 7 12 12 C 1.38026 * 120.06923 * 179.97438 * 11 10 9 13 13 C 1.38566 * 120.40427 * 359.97438 * 12 11 10 14 14 C 1.37832 * 120.32297 * 359.79130 * 13 12 11 15 15 C 1.39669 * 119.91753 * 0.43717 * 14 13 12 16 16 C 1.47533 * 120.19631 * 179.81718 * 15 14 13 17 17 O 1.21589 * 119.99911 * 179.73006 * 16 15 14 18 18 N 1.34773 * 120.00187 * 359.71976 * 16 15 14 19 19 C 1.46502 * 120.00140 * 180.02562 * 18 16 15 20 20 H 1.08998 * 110.28650 * 35.68033 * 19 18 16 21 21 C 1.54258 * 110.32223 * 273.54852 * 19 18 16 22 22 C 1.54382 * 105.06037 * 241.10129 * 21 19 18 23 23 N 1.48561 * 104.59635 * 336.15162 * 22 21 19 24 24 C 1.46897 * 110.99949 * 159.03692 * 23 22 21 25 25 C 1.53001 * 117.50027 * 133.20459 * 24 23 22 26 26 C 1.53000 * 60.00048 * 252.50902 * 25 24 23 27 27 C 1.48563 * 104.22018 * 39.47955 * 23 22 21 28 28 H 0.96999 * 120.00011 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.96378 * 359.97438 * 11 10 9 30 30 H 1.08003 * 119.79324 * 180.02562 * 12 11 10 31 31 H 1.07997 * 119.84143 * 180.02562 * 13 12 11 32 32 H 1.07994 * 120.04164 * 180.25721 * 14 13 12 33 33 H 0.97004 * 119.99613 * 0.02562 * 18 16 15 34 34 H 1.09004 * 110.32834 * 0.02562 * 21 19 18 35 35 H 1.09002 * 110.32325 * 122.21311 * 21 19 18 36 36 H 1.09003 * 110.40681 * 94.92955 * 22 21 19 37 37 H 1.08998 * 110.41228 * 217.37169 * 22 21 19 38 38 H 1.09000 * 115.54993 * 278.91330 * 24 23 22 39 39 H 1.08999 * 117.49541 * 359.97438 * 25 24 23 40 40 H 1.08993 * 117.50600 * 145.02229 * 25 24 23 41 41 H 1.09000 * 117.50366 * 252.50932 * 26 25 24 42 42 H 1.09008 * 117.50296 * 107.48433 * 26 25 24 43 43 H 1.08998 * 110.41182 * 201.73520 * 27 23 22 44 44 H 1.09005 * 110.51035 * 79.34632 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0087 -1.2012 0.0005 8 1 1.4687 -2.1365 0.0005 9 8 3.3569 -1.2012 0.0000 10 6 3.9721 -2.4041 -0.1058 11 6 3.2244 -3.5737 -0.0906 12 6 3.8529 -4.7978 -0.1990 13 6 5.2310 -4.8699 -0.3241 14 6 5.9889 -3.7189 -0.3460 15 6 5.3674 -2.4733 -0.2324 16 6 6.1730 -1.2375 -0.2510 17 8 5.6278 -0.1548 -0.1568 18 7 7.5134 -1.3086 -0.3721 19 6 8.3135 -0.0815 -0.3900 20 1 7.8804 0.6618 0.2792 21 6 8.4049 0.4776 -1.8248 22 6 9.9105 0.4638 -2.1656 23 7 10.5933 0.5020 -0.8467 24 6 11.9714 0.0047 -0.9528 25 6 13.0735 0.8295 -0.2849 26 6 12.9494 0.8110 -1.8097 27 6 9.7716 -0.3862 0.0154 28 1 -0.4850 0.8400 -0.0004 29 1 2.1498 -3.5257 0.0062 30 1 3.2668 -5.7049 -0.1871 31 1 5.7133 -5.8325 -0.4088 32 1 7.0623 -3.7802 -0.4479 33 1 7.9484 -2.1724 -0.4475 34 1 7.8541 -0.1607 -2.5157 35 1 8.0183 1.4962 -1.8595 36 1 10.1705 -0.4488 -2.7020 37 1 10.1747 1.3412 -2.7559 38 1 12.0815 -1.0797 -0.9489 39 1 12.7759 1.7414 0.2329 40 1 13.9089 0.2879 0.1587 41 1 13.7031 0.2570 -2.3694 42 1 12.5701 1.7104 -2.2949 43 1 9.9313 -0.1489 1.0671 44 1 10.0092 -1.4324 -0.1778 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920302639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:20:14 Heat of formation + Delta-G solvation = 7.368797 kcal Electronic energy + Delta-G solvation = -26088.846881 eV Core-core repulsion = 22394.132263 eV Total energy + Delta-G solvation = -3694.714618 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.10514 -39.33985 -38.10669 -36.56702 -36.23470 -33.48216 -32.45695 -30.85616 -29.68739 -29.21833 -28.14076 -25.30887 -23.45366 -22.93203 -22.45954 -21.51008 -20.87450 -20.58021 -19.76738 -17.92123 -17.85356 -16.90382 -16.47278 -16.32767 -15.11042 -15.06954 -14.56780 -14.41031 -14.34566 -14.08248 -14.01905 -13.73564 -13.47212 -13.32697 -12.76202 -12.52904 -12.36529 -12.22029 -12.17297 -11.87295 -11.74890 -11.47807 -11.38482 -11.28726 -10.93967 -10.83582 -10.72825 -10.69880 -10.34562 -10.04975 -9.62863 -9.08509 -8.89759 -8.79388 -8.75199 -8.40098 -7.49564 -6.47813 -4.13001 1.55588 2.16993 3.27551 3.32144 3.38200 3.42144 3.55046 3.66748 3.81930 4.35443 4.38394 4.48550 4.57927 4.61770 4.72131 4.80051 4.88109 5.06171 5.08344 5.10046 5.24137 5.30214 5.32000 5.34777 5.38424 5.50744 5.62027 5.64629 5.71958 5.81452 5.87599 5.88993 6.02027 6.09235 6.12720 6.35508 6.43517 6.53513 6.77719 6.80295 6.86107 6.99531 7.13105 7.46403 7.66418 7.91906 7.94282 8.84301 8.88700 9.50587 10.57220 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.003534 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.808577 B = 7920.384433 C = 9485.458523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.238 1.238 7 C -0.397 4.397 8 H 0.108 0.892 9 O -0.165 6.165 10 C 0.201 3.799 11 C -0.227 4.227 12 C -0.051 4.051 13 C -0.222 4.222 14 C -0.041 4.041 15 C -0.227 4.227 16 C 0.562 3.438 17 O -0.515 6.515 18 N -0.736 5.736 19 C 0.146 3.854 20 H 0.099 0.901 21 C -0.137 4.137 22 C 0.037 3.963 23 N -0.482 5.482 24 C -0.008 4.008 25 C -0.162 4.162 26 C -0.172 4.172 27 C 0.034 3.966 28 H 0.282 0.718 29 H 0.138 0.862 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.392 0.608 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.467 -4.012 -2.616 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.161 1.161 7 C -0.472 4.472 8 H 0.125 0.875 9 O -0.065 6.065 10 C 0.143 3.857 11 C -0.246 4.246 12 C -0.069 4.069 13 C -0.241 4.241 14 C -0.059 4.059 15 C -0.232 4.232 16 C 0.352 3.648 17 O -0.390 6.390 18 N -0.391 5.391 19 C 0.040 3.960 20 H 0.117 0.883 21 C -0.176 4.176 22 C -0.090 4.090 23 N -0.206 5.206 24 C -0.117 4.117 25 C -0.199 4.199 26 C -0.210 4.210 27 C -0.095 4.095 28 H 0.092 0.908 29 H 0.156 0.844 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.227 0.773 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 21.938 -2.252 -2.296 22.172 hybrid contribution 0.287 -0.810 -0.438 0.965 sum 22.225 -3.062 -2.734 22.601 Atomic orbital electron populations 1.69642 1.05821 1.28976 1.46069 1.24501 0.94970 0.99330 0.94584 0.86190 0.81293 0.80372 0.79610 1.19937 1.21246 1.16087 1.20928 0.77117 0.96763 1.52349 0.87452 1.83781 1.22082 1.24926 1.75676 1.19021 0.90298 0.85816 0.90535 1.21292 1.01388 0.91657 1.10259 1.20964 0.94372 0.96776 0.94817 1.20533 0.94038 0.97297 1.12210 1.20745 0.98024 0.91308 0.95867 1.18850 0.91210 0.92849 1.20269 1.18197 0.81134 0.89394 0.76073 1.90860 1.70876 1.29333 1.47940 1.46010 1.06864 1.08370 1.77893 1.21505 0.89647 0.87811 0.97022 0.88314 1.22796 0.94944 1.02838 0.97037 1.23081 0.93731 1.01045 0.91162 1.65199 0.99704 1.46321 1.09370 1.22612 0.87000 0.95315 1.06786 1.23031 0.99235 1.02597 0.95057 1.23016 1.01309 1.02541 0.94107 1.23320 0.91912 0.95289 0.98950 0.90812 0.84411 0.86835 0.87045 0.86975 0.77272 0.90437 0.90263 0.93652 0.90090 0.89288 0.88056 0.88803 0.88742 0.88309 0.89207 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.30 13.96 55.48 0.77 -24.52 16 2 C 0.07 2.06 5.49 -17.51 -0.10 1.97 16 3 Si 0.90 23.26 28.62 -169.99 -4.86 18.39 16 4 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.24 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.40 -11.33 9.95 30.90 0.31 -11.03 16 8 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 9 O -0.16 -4.52 6.67 -21.08 -0.14 -4.66 16 10 C 0.20 4.72 6.66 -38.60 -0.26 4.46 16 11 C -0.23 -4.76 9.16 -39.44 -0.36 -5.12 16 12 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 13 C -0.22 -3.39 10.02 -39.61 -0.40 -3.78 16 14 C -0.04 -0.64 9.54 -39.20 -0.37 -1.01 16 15 C -0.23 -4.54 5.89 -104.81 -0.62 -5.16 16 16 C 0.56 11.16 7.76 -12.47 -0.10 11.06 16 17 O -0.51 -12.63 14.86 -16.57 -0.25 -12.88 16 18 N -0.74 -10.59 4.99 -53.51 -0.27 -10.86 16 19 C 0.15 1.94 3.36 -66.55 -0.22 1.72 16 20 H 0.10 1.56 7.64 -51.93 -0.40 1.16 16 21 C -0.14 -1.73 6.78 -25.35 -0.17 -1.90 16 22 C 0.04 0.38 6.19 -2.18 -0.01 0.37 16 23 N -0.48 -4.95 5.53 -222.02 -1.23 -6.18 16 24 C -0.01 -0.07 5.09 -67.71 -0.34 -0.41 16 25 C -0.16 -1.22 10.46 -26.73 -0.28 -1.50 16 26 C -0.17 -1.27 10.09 -26.73 -0.27 -1.54 16 27 C 0.03 0.35 6.20 -2.18 -0.01 0.34 16 28 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.14 3.01 5.64 -52.48 -0.30 2.71 16 30 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 31 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.11 1.31 6.40 -52.49 -0.34 0.97 16 33 H 0.39 4.45 6.37 -40.82 -0.26 4.19 16 34 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.43 8.00 -51.93 -0.42 0.02 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.71 7.88 -51.93 -0.41 0.30 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.46 7.41 -51.93 -0.38 0.07 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -32.41 362.76 -10.25 -42.65 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.14 Total: 5.37 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -3.61 Total: -12.79 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.72 Total: -41.57 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.39 Total: -17.53 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.86 Total: 18.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.41 -10.25 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920302639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.024 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds