Wall clock time and date at job start Fri Apr 10 2020 23:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31528 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48500 * 109.46765 * 269.99740 * 3 2 1 5 5 H 1.48493 * 109.47135 * 29.99862 * 3 2 1 6 6 H 1.48496 * 109.46745 * 149.99857 * 3 2 1 7 7 C 1.38697 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00265 * 0.02562 * 7 2 1 9 9 O 1.34819 * 119.99828 * 179.97438 * 7 2 1 10 10 C 1.35522 * 117.00101 * 185.05480 * 9 7 2 11 11 C 1.38832 * 120.16038 * 354.39890 * 10 9 7 12 12 C 1.38026 * 120.06923 * 179.97438 * 11 10 9 13 13 C 1.38566 * 120.40427 * 359.97438 * 12 11 10 14 14 C 1.37832 * 120.32297 * 359.79130 * 13 12 11 15 15 C 1.39669 * 119.91753 * 0.43717 * 14 13 12 16 16 C 1.47533 * 120.19631 * 179.81718 * 15 14 13 17 17 O 1.21589 * 119.99911 * 179.73006 * 16 15 14 18 18 N 1.34773 * 120.00187 * 359.71976 * 16 15 14 19 19 C 1.46502 * 120.00140 * 180.02562 * 18 16 15 20 20 H 1.08998 * 110.28650 * 35.68033 * 19 18 16 21 21 C 1.54258 * 110.32223 * 273.54852 * 19 18 16 22 22 C 1.54382 * 105.06037 * 241.10129 * 21 19 18 23 23 N 1.48561 * 104.59635 * 336.15162 * 22 21 19 24 24 C 1.46897 * 110.99949 * 159.03692 * 23 22 21 25 25 C 1.53001 * 117.50027 * 133.20459 * 24 23 22 26 26 C 1.53000 * 60.00048 * 252.50902 * 25 24 23 27 27 C 1.48563 * 104.22018 * 39.47955 * 23 22 21 28 28 H 0.96999 * 120.00011 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.96378 * 359.97438 * 11 10 9 30 30 H 1.08003 * 119.79324 * 180.02562 * 12 11 10 31 31 H 1.07997 * 119.84143 * 180.02562 * 13 12 11 32 32 H 1.07994 * 120.04164 * 180.25721 * 14 13 12 33 33 H 0.97004 * 119.99613 * 0.02562 * 18 16 15 34 34 H 1.09004 * 110.32834 * 0.02562 * 21 19 18 35 35 H 1.09002 * 110.32325 * 122.21311 * 21 19 18 36 36 H 1.09003 * 110.40681 * 94.92955 * 22 21 19 37 37 H 1.08998 * 110.41228 * 217.37169 * 22 21 19 38 38 H 1.09000 * 115.54993 * 278.91330 * 24 23 22 39 39 H 1.08999 * 117.49541 * 359.97438 * 25 24 23 40 40 H 1.08993 * 117.50600 * 145.02229 * 25 24 23 41 41 H 1.09000 * 117.50366 * 252.50932 * 26 25 24 42 42 H 1.09008 * 117.50296 * 107.48433 * 26 25 24 43 43 H 1.08998 * 110.41182 * 201.73520 * 27 23 22 44 44 H 1.09005 * 110.51035 * 79.34632 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0087 -1.2012 0.0005 8 1 1.4687 -2.1365 0.0005 9 8 3.3569 -1.2012 0.0000 10 6 3.9721 -2.4041 -0.1058 11 6 3.2244 -3.5737 -0.0906 12 6 3.8529 -4.7978 -0.1990 13 6 5.2310 -4.8699 -0.3241 14 6 5.9889 -3.7189 -0.3460 15 6 5.3674 -2.4733 -0.2324 16 6 6.1730 -1.2375 -0.2510 17 8 5.6278 -0.1548 -0.1568 18 7 7.5134 -1.3086 -0.3721 19 6 8.3135 -0.0815 -0.3900 20 1 7.8804 0.6618 0.2792 21 6 8.4049 0.4776 -1.8248 22 6 9.9105 0.4638 -2.1656 23 7 10.5933 0.5020 -0.8467 24 6 11.9714 0.0047 -0.9528 25 6 13.0735 0.8295 -0.2849 26 6 12.9494 0.8110 -1.8097 27 6 9.7716 -0.3862 0.0154 28 1 -0.4850 0.8400 -0.0004 29 1 2.1498 -3.5257 0.0062 30 1 3.2668 -5.7049 -0.1871 31 1 5.7133 -5.8325 -0.4088 32 1 7.0623 -3.7802 -0.4479 33 1 7.9484 -2.1724 -0.4475 34 1 7.8541 -0.1607 -2.5157 35 1 8.0183 1.4962 -1.8595 36 1 10.1705 -0.4488 -2.7020 37 1 10.1747 1.3412 -2.7559 38 1 12.0815 -1.0797 -0.9489 39 1 12.7759 1.7414 0.2329 40 1 13.9089 0.2879 0.1587 41 1 13.7031 0.2570 -2.3694 42 1 12.5701 1.7104 -2.2949 43 1 9.9313 -0.1489 1.0671 44 1 10.0092 -1.4324 -0.1778 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920302639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:20:13 Heat of formation + Delta-G solvation = -14.699073 kcal Electronic energy + Delta-G solvation = -26089.803815 eV Core-core repulsion = 22394.132263 eV Total energy + Delta-G solvation = -3695.671552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52201 -40.57271 -39.47227 -38.16011 -37.16567 -34.76909 -34.50597 -32.25815 -30.79930 -30.63903 -29.20912 -27.27156 -24.87582 -23.67302 -23.30085 -22.91954 -21.90889 -21.73922 -20.92337 -19.80885 -19.44526 -18.06036 -17.65518 -17.49083 -16.66249 -16.14559 -16.02082 -16.01252 -15.63479 -15.48491 -15.30772 -15.14214 -14.93763 -14.46781 -14.23350 -14.03997 -13.95460 -13.40264 -13.20389 -13.04704 -12.85932 -12.83662 -12.58254 -12.49092 -12.38582 -12.26636 -12.03858 -11.89801 -11.52800 -11.31967 -11.00608 -10.97896 -10.71691 -10.16499 -9.83709 -9.50907 -9.15208 -8.58892 -6.27477 0.04994 0.64666 1.23754 1.28842 1.57278 2.01753 2.10127 2.28599 2.75079 2.80539 2.98021 3.01986 3.16451 3.45512 3.75615 3.91355 3.96468 4.01552 4.06429 4.12696 4.23288 4.26596 4.30243 4.37990 4.48132 4.53775 4.59884 4.78040 4.80179 4.81874 4.83347 4.93432 4.98478 5.05833 5.08047 5.13487 5.28365 5.33313 5.42700 5.47209 5.61583 5.69044 5.78122 5.83414 6.08148 6.15362 6.62364 6.78447 7.39310 7.58459 8.51652 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.003534 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.808577 B = 7920.384433 C = 9485.458523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.026 3.974 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.402 4.402 8 H 0.092 0.908 9 O -0.209 6.209 10 C 0.161 3.839 11 C -0.252 4.252 12 C -0.042 4.042 13 C -0.189 4.189 14 C -0.029 4.029 15 C -0.233 4.233 16 C 0.556 3.444 17 O -0.571 6.571 18 N -0.708 5.708 19 C 0.141 3.859 20 H 0.065 0.935 21 C -0.136 4.136 22 C 0.049 3.951 23 N -0.496 5.496 24 C -0.018 4.018 25 C -0.161 4.161 26 C -0.166 4.166 27 C 0.046 3.954 28 H 0.286 0.714 29 H 0.114 0.886 30 H 0.151 0.849 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.412 0.588 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.121 -7.362 -3.250 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.478 4.478 8 H 0.110 0.890 9 O -0.113 6.113 10 C 0.108 3.892 11 C -0.271 4.271 12 C -0.061 4.061 13 C -0.207 4.207 14 C -0.047 4.047 15 C -0.238 4.238 16 C 0.346 3.654 17 O -0.450 6.450 18 N -0.363 5.363 19 C 0.036 3.964 20 H 0.084 0.916 21 C -0.176 4.176 22 C -0.079 4.079 23 N -0.220 5.220 24 C -0.127 4.127 25 C -0.199 4.199 26 C -0.204 4.204 27 C -0.082 4.082 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.168 0.832 31 H 0.185 0.815 32 H 0.184 0.816 33 H 0.251 0.749 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 26.674 -5.667 -2.939 27.427 hybrid contribution -0.782 -0.152 -0.276 0.843 sum 25.892 -5.820 -3.215 26.732 Atomic orbital electron populations 1.69684 1.06402 1.29548 1.49509 1.25028 0.95620 1.01367 0.95367 0.85416 0.79048 0.78597 0.78996 1.20234 1.19036 1.19137 1.20898 0.78406 0.96269 1.52260 0.89036 1.83773 1.20769 1.26962 1.79845 1.19785 0.92146 0.85677 0.91631 1.21336 1.00585 0.92984 1.12173 1.21447 0.95951 0.96158 0.92498 1.21237 0.93010 0.99412 1.07068 1.21347 1.00758 0.89295 0.93333 1.19284 0.90015 0.94995 1.19480 1.18389 0.82711 0.88635 0.75615 1.90849 1.72342 1.31274 1.50562 1.45717 1.05031 1.09915 1.75636 1.21560 0.91223 0.86671 0.96978 0.91640 1.22720 0.97052 1.01456 0.96346 1.22979 0.91410 1.02051 0.91429 1.65179 1.00744 1.46929 1.09196 1.22721 0.85867 0.96140 1.07959 1.23078 0.99344 1.02133 0.95339 1.23073 1.01065 1.02148 0.94076 1.23209 0.89233 0.96711 0.99071 0.90451 0.86779 0.83177 0.81530 0.81639 0.74889 0.91294 0.92189 0.92089 0.89647 0.87902 0.89291 0.87140 0.87002 0.89092 0.89024 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.24 13.96 21.62 0.30 -55.94 16 2 C 0.03 1.62 5.49 84.85 0.47 2.09 16 3 Si 0.96 51.55 28.62 68.60 1.96 53.52 16 4 H -0.28 -14.74 7.11 99.48 0.71 -14.03 16 5 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -15.51 7.11 99.48 0.71 -14.80 16 7 C -0.40 -24.76 9.95 67.93 0.68 -24.08 16 8 H 0.09 5.69 5.44 -2.91 -0.02 5.67 16 9 O -0.21 -12.27 6.67 0.77 0.01 -12.27 16 10 C 0.16 7.78 6.66 22.91 0.15 7.93 16 11 C -0.25 -10.69 9.16 22.36 0.20 -10.48 16 12 C -0.04 -1.28 10.03 22.30 0.22 -1.06 16 13 C -0.19 -4.53 10.02 22.25 0.22 -4.31 16 14 C -0.03 -0.76 9.54 22.52 0.21 -0.54 16 15 C -0.23 -9.05 5.89 -19.99 -0.12 -9.17 16 16 C 0.56 22.11 7.76 86.70 0.67 22.78 16 17 O -0.57 -29.51 14.86 16.90 0.25 -29.25 16 18 N -0.71 -18.95 4.99 -441.46 -2.20 -21.16 16 19 C 0.14 3.65 3.36 45.89 0.15 3.81 16 20 H 0.07 2.16 7.64 -2.39 -0.02 2.15 16 21 C -0.14 -3.40 6.78 31.49 0.21 -3.18 16 22 C 0.05 0.89 6.19 86.45 0.53 1.42 16 23 N -0.50 -9.01 5.53 -856.33 -4.74 -13.74 16 24 C -0.02 -0.25 5.09 44.92 0.23 -0.02 16 25 C -0.16 -1.99 10.46 30.59 0.32 -1.67 16 26 C -0.17 -1.94 10.09 30.59 0.31 -1.63 16 27 C 0.05 0.83 6.20 86.45 0.54 1.36 16 28 H 0.29 16.24 8.31 -92.71 -0.77 15.47 16 29 H 0.11 5.33 5.64 -2.91 -0.02 5.31 16 30 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 32 H 0.17 2.55 6.40 -2.91 -0.02 2.54 16 33 H 0.41 7.43 6.37 -92.71 -0.59 6.84 16 34 H 0.07 1.82 7.95 -2.39 -0.02 1.80 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 0.94 8.00 -2.39 -0.02 0.92 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.15 7.88 -2.39 -0.02 1.13 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.08 0.99 7.41 -2.38 -0.02 0.97 16 Total: -1.00 -80.05 362.76 1.03 -79.02 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.43 Total: 16.57 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 5.01 Total: -16.75 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -6.64 Total: -90.83 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: 0.26 Total: -41.52 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 1.96 Total: 53.52 kcal Total: -80.05 1.03 -79.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920302639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.321 kcal (2) G-P(sol) polarization free energy of solvation -80.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds