Wall clock time and date at job start Fri Apr 10 2020 23:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99956 * 2 1 4 4 H 1.48501 * 109.47173 * 270.00094 * 3 2 1 5 5 H 1.48500 * 109.47128 * 29.99816 * 3 2 1 6 6 H 1.48495 * 109.47373 * 149.99962 * 3 2 1 7 7 C 1.38810 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00340 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99820 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00147 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.91648 * 31.09482 * 10 9 7 12 12 C 1.55154 * 111.00473 * 267.19313 * 10 9 7 13 13 C 1.54322 * 102.94204 * 206.42028 * 12 10 9 14 14 N 1.47019 * 107.27223 * 22.19795 * 13 12 10 15 15 C 1.34775 * 125.65013 * 181.03860 * 14 13 12 16 16 O 1.21285 * 120.00015 * 180.02562 * 15 14 13 17 17 C 1.50694 * 120.00038 * 0.02562 * 15 14 13 18 18 C 1.53002 * 109.47254 * 180.02562 * 17 15 14 19 19 H 1.09000 * 110.13203 * 306.69712 * 18 17 15 20 20 O 1.43943 * 110.15365 * 68.47409 * 18 17 15 21 21 C 1.43942 * 104.94950 * 147.56757 * 20 18 17 22 22 C 1.51083 * 105.95975 * 331.55384 * 21 20 18 23 23 C 1.37967 * 132.69246 * 197.71460 * 22 21 20 24 24 C 1.38294 * 119.91936 * 180.02562 * 23 22 21 25 25 C 1.38262 * 120.04182 * 359.94356 * 24 23 22 26 26 C 1.38298 * 120.04102 * 0.03268 * 25 24 23 27 27 C 1.37966 * 119.91729 * 359.97438 * 26 25 24 28 28 C 1.47426 * 108.70209 * 1.05519 * 14 13 12 29 29 H 0.96994 * 120.00458 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99713 * 359.97438 * 9 7 2 31 31 H 1.08999 * 110.71557 * 88.06123 * 12 10 9 32 32 H 1.08995 * 110.87338 * 324.85942 * 12 10 9 33 33 H 1.09001 * 109.88768 * 262.77536 * 13 12 10 34 34 H 1.09003 * 109.87844 * 141.61039 * 13 12 10 35 35 H 1.09006 * 109.47276 * 300.00339 * 17 15 14 36 36 H 1.08996 * 109.47281 * 59.99913 * 17 15 14 37 37 H 1.09000 * 110.15634 * 212.43242 * 21 20 18 38 38 H 1.09007 * 110.15321 * 90.67937 * 21 20 18 39 39 H 1.08001 * 120.03868 * 0.02562 * 23 22 21 40 40 H 1.07993 * 119.97493 * 179.97438 * 24 23 22 41 41 H 1.07997 * 119.98199 * 180.02562 * 25 24 23 42 42 H 1.08005 * 120.03958 * 179.97438 * 26 25 24 43 43 H 1.08998 * 110.36718 * 94.71247 * 28 14 13 44 44 H 1.09005 * 110.36600 * 217.03808 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0022 11 1 3.5519 -3.2441 -0.5233 12 6 4.4511 -2.9160 1.4493 13 6 5.7139 -3.7821 1.2577 14 7 6.3285 -3.3819 -0.0165 15 6 7.4420 -3.9179 -0.5542 16 8 7.8612 -3.5072 -1.6156 17 6 8.1664 -5.0275 0.1635 18 6 9.3878 -5.4518 -0.6543 19 1 9.0906 -5.6928 -1.6750 20 8 10.3718 -4.4013 -0.6577 21 6 11.6398 -5.0803 -0.7123 22 6 11.4231 -6.4192 -0.0467 23 6 12.2911 -7.3545 0.4779 24 6 11.7955 -8.5179 1.0378 25 6 10.4317 -8.7428 1.0729 26 6 9.5616 -7.8050 0.5476 27 6 10.0560 -6.6445 -0.0111 28 6 5.5251 -2.2967 -0.6086 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.6384 -3.5073 1.8712 32 1 4.6668 -2.0539 2.0804 33 1 5.4387 -4.8361 1.2216 34 1 6.4114 -3.6067 2.0768 35 1 8.4898 -4.6760 1.1434 36 1 7.4969 -5.8789 0.2858 37 1 12.3950 -4.5099 -0.1716 38 1 11.9459 -5.2214 -1.7490 39 1 13.3563 -7.1784 0.4512 40 1 12.4741 -9.2508 1.4482 41 1 10.0457 -9.6515 1.5108 42 1 8.4963 -7.9810 0.5747 43 1 5.9392 -1.3260 -0.3361 44 1 5.4853 -2.4024 -1.6928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970596788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:18:21 Heat of formation + Delta-G solvation = -44.840028 kcal Electronic energy + Delta-G solvation = -25630.637875 eV Core-core repulsion = 21933.659313 eV Total energy + Delta-G solvation = -3696.978562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91171 -40.87846 -38.83126 -38.17089 -36.03640 -33.92018 -33.41151 -32.24018 -31.53525 -30.92204 -29.50420 -27.25259 -25.65426 -24.85375 -23.95673 -22.51806 -21.99533 -21.74174 -20.16488 -19.75486 -18.44085 -17.78604 -17.47663 -17.19048 -17.04735 -16.54505 -16.30234 -15.88735 -15.78307 -15.31817 -15.13572 -14.71344 -14.65024 -14.44860 -14.14676 -13.79497 -13.66778 -13.54411 -13.45091 -13.26053 -13.22251 -13.07470 -12.73773 -12.69352 -12.29508 -12.18988 -12.14963 -11.83032 -11.80534 -11.60778 -11.06212 -11.00264 -10.93363 -9.83723 -9.68228 -9.54898 -9.35590 -8.03538 -5.38397 0.26542 0.39804 1.38560 1.41185 1.47584 1.60919 1.90645 2.47304 2.73932 2.84455 3.17768 3.26089 3.46802 3.52124 3.64870 3.78029 3.85314 4.02999 4.07470 4.18030 4.22694 4.23222 4.32660 4.40771 4.42125 4.44792 4.49715 4.62851 4.68635 4.77226 4.79479 4.85059 4.89371 4.97279 5.09801 5.19910 5.25400 5.38495 5.40638 5.45060 5.55382 5.75332 5.78134 6.00938 6.19828 6.52571 7.03997 7.12698 7.78737 7.97203 9.17221 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.032139 B = 0.002391 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.012474 B =11710.073149 C =12256.828172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.060 4.060 3 Si 0.950 3.050 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.252 1.252 7 C -0.229 4.229 8 H 0.064 0.936 9 N -0.744 5.744 10 C 0.168 3.832 11 H 0.066 0.934 12 C -0.146 4.146 13 C 0.106 3.894 14 N -0.616 5.616 15 C 0.523 3.477 16 O -0.581 6.581 17 C -0.120 4.120 18 C 0.136 3.864 19 H 0.073 0.927 20 O -0.374 6.374 21 C 0.081 3.919 22 C -0.145 4.145 23 C -0.102 4.102 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.096 4.096 27 C -0.141 4.141 28 C 0.103 3.897 29 H 0.258 0.742 30 H 0.366 0.634 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.061 0.939 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.080 -20.406 5.987 34.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.252 4.252 3 Si 0.778 3.222 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.176 1.176 7 C -0.360 4.360 8 H 0.082 0.918 9 N -0.386 5.386 10 C 0.059 3.941 11 H 0.084 0.916 12 C -0.187 4.187 13 C -0.016 4.016 14 N -0.350 5.350 15 C 0.313 3.687 16 O -0.461 6.461 17 C -0.159 4.159 18 C 0.079 3.921 19 H 0.091 0.909 20 O -0.293 6.293 21 C 0.005 3.995 22 C -0.145 4.145 23 C -0.120 4.120 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.114 4.114 27 C -0.141 4.141 28 C -0.022 4.022 29 H 0.067 0.933 30 H 0.199 0.801 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.157 0.843 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.161 0.839 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.163 0.837 43 H 0.079 0.921 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 27.107 -20.065 5.403 34.156 hybrid contribution -0.145 1.423 -0.402 1.486 sum 26.962 -18.642 5.001 33.159 Atomic orbital electron populations 1.69860 1.06986 1.26679 1.59470 1.25443 0.96058 1.01054 1.02634 0.85487 0.78749 0.80071 0.77929 1.20917 1.22181 1.17638 1.18994 0.82041 0.93636 1.41319 0.91799 1.42588 1.02695 1.03378 1.89945 1.21421 0.89617 0.88078 0.95003 0.91601 1.23205 0.96989 1.00038 0.98444 1.22254 0.94455 1.00199 0.84687 1.48524 1.25850 1.36863 1.23761 1.20837 0.79058 0.83734 0.85030 1.90705 1.66597 1.64070 1.24736 1.21817 0.95916 0.97920 1.00263 1.21010 0.88532 0.84459 0.98143 0.90893 1.89200 1.15714 1.28873 1.95505 1.21929 0.87230 0.89849 1.00482 1.21198 0.94922 0.97768 1.00597 1.20710 1.00220 0.93223 0.97808 1.21549 0.96270 0.97032 0.98509 1.21536 0.93408 0.99675 0.98948 1.20752 1.01550 0.91883 0.97235 1.20963 0.95063 0.96883 1.01200 1.22290 0.91146 0.90554 0.98177 0.93299 0.80052 0.89734 0.91234 0.88487 0.89156 0.86601 0.84283 0.87323 0.90255 0.83887 0.82900 0.82846 0.83725 0.92115 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.93 13.97 21.65 0.30 -61.62 16 2 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 3 Si 0.95 45.25 27.74 68.60 1.90 47.16 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 7 C -0.23 -12.66 10.44 84.03 0.88 -11.78 16 8 H 0.06 3.82 8.06 -2.91 -0.02 3.80 16 9 N -0.74 -33.68 5.05 -316.38 -1.60 -35.28 16 10 C 0.17 6.08 3.71 46.38 0.17 6.25 16 11 H 0.07 2.50 8.09 -2.39 -0.02 2.48 16 12 C -0.15 -4.12 6.65 31.78 0.21 -3.91 16 13 C 0.11 2.20 6.49 86.73 0.56 2.76 16 14 N -0.62 -17.12 3.33 -811.80 -2.70 -19.82 16 15 C 0.52 15.17 7.76 87.66 0.68 15.85 16 16 O -0.58 -22.28 15.82 5.54 0.09 -22.20 16 17 C -0.12 -2.32 4.55 29.85 0.14 -2.19 16 18 C 0.14 3.04 2.84 29.97 0.09 3.13 16 19 H 0.07 1.85 7.92 -2.39 -0.02 1.83 16 20 O -0.37 -9.99 10.89 -140.40 -1.53 -11.52 16 21 C 0.08 1.53 7.63 71.36 0.54 2.08 16 22 C -0.14 -2.46 6.32 -19.72 -0.12 -2.59 16 23 C -0.10 -1.25 10.04 22.22 0.22 -1.03 16 24 C -0.12 -1.12 10.05 22.29 0.22 -0.89 16 25 C -0.12 -1.15 10.05 22.29 0.22 -0.93 16 26 C -0.10 -1.22 9.78 22.22 0.22 -1.00 16 27 C -0.14 -2.47 5.72 -19.72 -0.11 -2.58 16 28 C 0.10 3.45 6.55 86.86 0.57 4.02 16 29 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 30 H 0.37 16.19 5.62 -92.71 -0.52 15.66 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.14 1.73 7.82 -2.39 -0.02 1.71 16 37 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 40 H 0.15 0.63 8.06 -2.91 -0.02 0.61 16 41 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 42 H 0.14 1.20 7.87 -2.91 -0.02 1.18 16 43 H 0.06 2.08 8.00 -2.39 -0.02 2.06 16 44 H 0.06 2.27 8.04 -2.38 -0.02 2.25 16 Total: -1.00 -76.99 362.52 1.84 -75.14 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.42 Total: 23.97 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 4.96 Total: 4.16 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -4.00 Total: -116.72 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.44 Total: -33.72 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.16 kcal Total: -76.99 1.84 -75.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970596788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.304 kcal (2) G-P(sol) polarization free energy of solvation -76.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds