Wall clock time and date at job start Fri Apr 10 2020 23:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48489 * 109.47281 * 240.00334 * 3 2 1 5 5 H 1.48501 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46736 * 119.99988 * 3 2 1 7 7 C 1.38810 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99464 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00503 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.49750 * 180.02562 * 9 7 2 11 11 C 1.53939 * 86.11721 * 155.36133 * 10 9 7 12 12 N 1.46498 * 113.74248 * 137.95624 * 11 10 9 13 13 C 1.34775 * 120.00383 * 156.92545 * 12 11 10 14 14 O 1.21275 * 119.99867 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00115 * 179.97438 * 13 12 11 16 16 C 1.50706 * 109.99092 * 83.91336 * 15 13 12 17 17 C 1.38239 * 119.99672 * 90.81198 * 16 15 13 18 18 C 1.38238 * 119.99446 * 179.76701 * 17 16 15 19 19 C 1.38227 * 119.99995 * 0.50857 * 18 17 16 20 20 C 1.38231 * 120.00592 * 359.74330 * 19 18 17 21 21 C 1.38227 * 119.99906 * 271.08756 * 16 15 13 22 22 C 1.54098 * 109.87863 * 204.99627 * 15 13 12 23 23 C 1.54813 * 104.30472 * 117.32884 * 22 15 13 24 24 C 1.55227 * 101.98357 * 339.26359 * 23 22 15 25 25 O 1.43744 * 109.88056 * 322.83102 * 15 13 12 26 26 C 1.47820 * 134.45357 * 359.87553 * 9 7 2 27 27 H 0.97000 * 120.00380 * 359.97438 * 1 2 3 28 28 H 1.09007 * 113.76449 * 41.05946 * 10 9 7 29 29 H 1.09001 * 113.87340 * 269.68159 * 10 9 7 30 30 H 1.08996 * 113.74575 * 269.15655 * 11 10 9 31 31 H 0.97006 * 119.99890 * 336.92770 * 12 11 10 32 32 H 1.08003 * 120.00113 * 359.97438 * 17 16 15 33 33 H 1.08005 * 119.99839 * 180.22520 * 18 17 16 34 34 H 1.08005 * 119.99991 * 179.72897 * 19 18 17 35 35 H 1.07999 * 120.00751 * 179.97438 * 20 19 18 36 36 H 1.07998 * 120.00290 * 359.97438 * 21 16 15 37 37 H 1.09002 * 110.48969 * 236.07220 * 22 15 13 38 38 H 1.09002 * 110.48612 * 358.58887 * 22 15 13 39 39 H 1.08999 * 110.90868 * 97.38351 * 23 22 15 40 40 H 1.09003 * 110.91016 * 220.99202 * 23 22 15 41 41 H 1.09002 * 110.51777 * 278.38206 * 24 23 22 42 42 H 1.09000 * 110.77540 * 155.50397 * 24 23 22 43 43 H 1.08996 * 113.77094 * 90.37646 * 26 9 7 44 44 H 1.08995 * 113.83386 * 318.90962 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7201 -3.8102 -0.0005 11 6 0.3471 -4.0829 0.6398 12 7 -0.3333 -5.2613 0.0969 13 6 -1.2732 -5.8931 0.8275 14 8 -1.5555 -5.4863 1.9346 15 6 -1.9734 -7.1050 0.2688 16 6 -1.1407 -8.3378 0.5095 17 6 -1.3205 -9.0790 1.6624 18 6 -0.5600 -10.2126 1.8808 19 6 0.3875 -10.5988 0.9515 20 6 0.5709 -9.8547 -0.1989 21 6 -0.1932 -8.7240 -0.4199 22 6 -3.3534 -7.2665 0.9353 23 6 -4.3612 -7.1141 -0.2300 24 6 -3.5145 -6.3629 -1.2922 25 8 -2.1971 -6.9338 -1.1408 26 6 -0.1058 -2.7571 0.0022 27 1 -0.4851 0.8400 0.0004 28 1 2.5625 -4.0323 0.6548 29 1 1.8327 -4.2367 -0.9973 30 1 0.3594 -4.0639 1.7295 31 1 -0.1072 -5.5870 -0.7885 32 1 -2.0575 -8.7745 2.3908 33 1 -0.7030 -10.7938 2.7798 34 1 0.9847 -11.4820 1.1242 35 1 1.3115 -10.1562 -0.9249 36 1 -0.0499 -8.1427 -1.3187 37 1 -3.4438 -8.2523 1.3914 38 1 -3.5109 -6.4865 1.6803 39 1 -4.6758 -8.0891 -0.6022 40 1 -5.2222 -6.5195 0.0755 41 1 -3.4963 -5.2939 -1.0801 42 1 -3.8999 -6.5475 -2.2950 43 1 -0.5318 -2.8718 -0.9944 44 1 -0.7184 -2.1403 0.6597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031311578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:21:00 Heat of formation + Delta-G solvation = -12.046506 kcal Electronic energy + Delta-G solvation = -26800.741635 eV Core-core repulsion = 23105.185107 eV Total energy + Delta-G solvation = -3695.556528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.10970 -40.28966 -39.40091 -38.80964 -35.24713 -33.85507 -33.63384 -32.73954 -31.67747 -29.67228 -28.92537 -26.68255 -25.85437 -24.51265 -23.84990 -23.02387 -22.13362 -21.41439 -20.80238 -18.82911 -18.66436 -18.41383 -17.65624 -17.03929 -16.98293 -16.55117 -15.85095 -15.76115 -15.67421 -15.50037 -15.42649 -14.70482 -14.61529 -14.23968 -14.06147 -13.75453 -13.62271 -13.35014 -13.26885 -13.05251 -12.86702 -12.77775 -12.64644 -12.35431 -12.23158 -12.18606 -11.99122 -11.85304 -11.75512 -11.58350 -11.52275 -10.90667 -10.59433 -10.03323 -9.80956 -9.67616 -9.01257 -7.93952 -5.30104 0.31275 0.50575 1.44354 1.46613 1.48960 1.54983 2.05577 2.47487 2.57097 2.87010 3.21458 3.34812 3.46027 3.60876 3.65665 3.79440 3.99688 4.07559 4.10301 4.17478 4.25631 4.28951 4.37899 4.46128 4.60330 4.67216 4.68409 4.68941 4.77955 4.84110 4.90036 4.93277 5.04331 5.08971 5.12519 5.16502 5.18700 5.42983 5.47599 5.56383 5.61177 5.62607 5.76603 5.85480 6.08643 6.50348 6.85045 7.13729 7.55171 8.47887 9.22714 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.003369 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.671119 B = 8308.267935 C = 9111.233601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 0.985 3.015 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.240 4.240 8 H 0.091 0.909 9 N -0.636 5.636 10 C 0.123 3.877 11 C 0.117 3.883 12 N -0.691 5.691 13 C 0.506 3.494 14 O -0.574 6.574 15 C 0.141 3.859 16 C -0.099 4.099 17 C -0.118 4.118 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.126 4.126 21 C -0.103 4.103 22 C -0.145 4.145 23 C -0.143 4.143 24 C 0.033 3.967 25 O -0.361 6.361 26 C 0.156 3.844 27 H 0.249 0.751 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.413 0.587 32 H 0.130 0.870 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.047 0.953 42 H 0.125 0.875 43 H 0.024 0.976 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 -24.694 -1.714 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.812 3.188 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.368 4.368 8 H 0.109 0.891 9 N -0.363 5.363 10 C -0.002 4.002 11 C 0.011 3.989 12 N -0.341 5.341 13 C 0.291 3.709 14 O -0.453 6.453 15 C 0.098 3.902 16 C -0.099 4.099 17 C -0.136 4.136 18 C -0.143 4.143 19 C -0.133 4.133 20 C -0.144 4.144 21 C -0.121 4.121 22 C -0.183 4.183 23 C -0.180 4.180 24 C -0.043 4.043 25 O -0.279 6.279 26 C 0.029 3.971 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.249 0.751 32 H 0.148 0.852 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.143 0.857 43 H 0.042 0.958 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.385 -24.108 -1.111 24.727 hybrid contribution 0.180 1.508 -0.294 1.546 sum -5.205 -22.600 -1.405 23.235 Atomic orbital electron populations 1.70035 1.06705 1.25865 1.57722 1.25737 0.96577 1.01250 1.02491 0.85059 0.77071 0.78178 0.78446 1.19897 1.22098 1.20039 1.19416 0.91019 0.82852 1.43485 0.89140 1.46023 1.03176 1.00730 1.86388 1.22975 0.94891 0.83769 0.98589 1.23233 0.93386 0.83826 0.98496 1.45865 1.38839 1.29058 1.20378 1.21390 0.79739 0.84510 0.85223 1.90664 1.65480 1.67371 1.21820 1.20850 0.96051 0.89899 0.83446 1.19414 0.98468 0.94990 0.97034 1.21254 1.00487 0.95474 0.96405 1.21429 0.95971 0.96448 1.00432 1.21583 0.97727 1.00302 0.93732 1.21472 0.99566 0.94828 0.98520 1.21143 0.94586 0.97493 0.98879 1.23130 0.90690 1.05030 0.99420 1.23186 0.98203 1.02623 0.93979 1.23909 0.81425 0.96786 1.02132 1.88879 1.35843 1.83002 1.20223 1.22542 0.87413 0.90783 0.96338 0.94203 0.91687 0.91925 0.89050 0.75084 0.85185 0.83534 0.83310 0.83686 0.85368 0.87572 0.90464 0.88299 0.88581 0.93433 0.85740 0.95843 0.94713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.59 11.39 21.65 0.25 -59.35 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 3 Si 0.99 46.45 29.55 68.60 2.03 48.48 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.24 -13.75 10.70 84.03 0.90 -12.85 16 8 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 9 N -0.64 -33.75 3.70 -716.75 -2.65 -36.40 16 10 C 0.12 5.00 8.69 86.48 0.75 5.75 16 11 C 0.12 4.84 4.40 46.74 0.21 5.04 16 12 N -0.69 -23.46 5.29 -447.45 -2.37 -25.83 16 13 C 0.51 17.33 6.67 87.66 0.58 17.92 16 14 O -0.57 -23.90 15.18 -3.01 -0.05 -23.95 16 15 C 0.14 3.67 0.90 -11.91 -0.01 3.66 16 16 C -0.10 -2.34 4.85 -19.86 -0.10 -2.44 16 17 C -0.12 -2.51 8.73 22.27 0.19 -2.31 16 18 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 19 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 20 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 21 C -0.10 -2.21 9.36 22.27 0.21 -2.00 16 22 C -0.14 -3.26 5.63 31.58 0.18 -3.08 16 23 C -0.14 -2.45 7.17 31.98 0.23 -2.23 16 24 C 0.03 0.69 7.66 72.75 0.56 1.24 16 25 O -0.36 -8.81 9.34 -148.98 -1.39 -10.21 16 26 C 0.16 7.96 7.33 86.43 0.63 8.59 16 27 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.06 2.26 8.11 -2.39 -0.02 2.24 16 30 H 0.09 4.17 7.51 -2.39 -0.02 4.15 16 31 H 0.41 12.10 8.23 -92.70 -0.76 11.34 16 32 H 0.13 2.59 6.45 -2.91 -0.02 2.57 16 33 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.13 2.66 7.56 -2.91 -0.02 2.63 16 37 H 0.11 1.97 5.77 -2.39 -0.01 1.96 16 38 H 0.08 2.10 6.72 -2.39 -0.02 2.08 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.03 2.04 7.17 -2.39 -0.02 2.02 16 Total: -1.00 -74.54 360.17 1.54 -73.00 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.25 Total: 25.84 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.47 Total: 8.41 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -4.77 Total: -121.58 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -1.44 Total: -34.16 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -74.54 1.54 -73.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031311578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.958 kcal (2) G-P(sol) polarization free energy of solvation -74.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds