Wall clock time and date at job start Fri Apr 10 2020 23:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35970 * 117.00384 * 2 1 4 4 C 1.39183 * 119.90598 * 359.97438 * 3 2 1 5 5 C 1.37727 * 120.57973 * 179.74579 * 4 3 2 6 6 C 1.39116 * 120.00552 * 0.23384 * 5 4 3 7 7 N 1.38126 * 133.11949 * 180.02562 * 6 5 4 8 8 H 0.97007 * 124.79354 * 0.02562 * 7 6 5 9 9 C 1.35427 * 110.40970 * 180.02562 * 7 6 5 10 10 C 1.50703 * 125.10664 * 180.02562 * 9 7 6 11 11 C 1.36398 * 109.78127 * 0.02562 * 9 7 6 12 12 C 1.46884 * 126.76210 * 180.02562 * 11 9 7 13 13 O 1.21675 * 120.00254 * 89.97173 * 12 11 9 14 14 N 1.34777 * 120.00159 * 269.98177 * 12 11 9 15 15 C 1.46494 * 120.00303 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47527 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47462 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47155 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99995 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99712 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99606 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00302 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47468 * 90.00047 * 22 20 18 24 24 H 1.48506 * 109.47088 * 210.00003 * 22 20 18 25 25 H 1.48502 * 109.46915 * 329.99729 * 22 20 18 26 26 C 1.40373 * 119.45475 * 0.02756 * 6 5 4 27 27 C 1.38209 * 119.91213 * 180.25771 * 3 2 1 28 28 H 1.09000 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46827 * 300.00126 * 1 2 3 30 30 H 1.08995 * 109.46892 * 60.00170 * 1 2 3 31 31 H 1.08002 * 119.71256 * 0.03004 * 4 3 2 32 32 H 1.08004 * 119.99364 * 180.25928 * 5 4 3 33 33 H 1.08992 * 109.47314 * 89.97976 * 10 9 7 34 34 H 1.09001 * 109.46692 * 209.97891 * 10 9 7 35 35 H 1.08994 * 109.47200 * 329.97440 * 10 9 7 36 36 H 0.96998 * 119.99902 * 359.97438 * 14 12 11 37 37 H 1.09007 * 109.47185 * 299.99474 * 15 14 12 38 38 H 1.08999 * 109.47352 * 59.99032 * 15 14 12 39 39 H 1.09011 * 109.46740 * 299.99558 * 16 15 14 40 40 H 1.08999 * 109.47354 * 59.99329 * 16 15 14 41 41 H 1.09003 * 109.46405 * 299.99650 * 17 16 15 42 42 H 1.08999 * 109.47482 * 59.99288 * 17 16 15 43 43 H 0.97000 * 119.99477 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.18728 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2865 2.3776 -0.0005 5 6 1.8973 3.6119 0.0047 6 6 3.2856 3.7011 0.0057 7 7 4.1632 4.7678 0.0109 8 1 3.8997 5.7014 0.0153 9 6 5.4434 4.3261 0.0089 10 6 6.6648 5.2089 0.0137 11 6 5.4612 2.9623 0.0018 12 6 6.6493 2.0986 -0.0019 13 8 7.1410 1.7358 1.0503 14 7 7.1950 1.7081 -1.1707 15 6 8.3796 0.8463 -1.1744 16 6 8.7926 0.5531 -2.6182 17 6 10.0294 -0.3475 -2.6220 18 6 10.4365 -0.6358 -4.0441 19 1 9.8695 -0.2187 -4.8632 20 6 11.5328 -1.4320 -4.2993 21 7 11.8878 -1.6840 -5.5404 22 14 12.5139 -2.1528 -2.8826 23 1 11.9504 -3.4760 -2.5129 24 1 13.9313 -2.3160 -3.2946 25 1 12.4402 -1.2392 -1.7142 26 6 4.0529 2.5256 0.0007 27 6 3.4266 1.2816 -0.0054 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2083 2.3139 -0.0005 32 1 1.2984 4.5107 0.0085 33 1 6.9588 5.4167 1.0425 34 1 7.4808 4.7029 -0.5022 35 1 6.4382 6.1455 -0.4957 36 1 6.8029 1.9971 -2.0095 37 1 9.1968 1.3496 -0.6576 38 1 8.1496 -0.0897 -0.6654 39 1 7.9753 0.0495 -3.1347 40 1 9.0224 1.4889 -3.1275 41 1 10.8467 0.1557 -2.1054 42 1 9.7991 -1.2833 -2.1127 43 1 12.6593 -2.2438 -5.7200 44 1 4.0163 0.3768 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253418523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:18:57 Heat of formation + Delta-G solvation = -57.434753 kcal Electronic energy + Delta-G solvation = -25178.085803 eV Core-core repulsion = 21480.561093 eV Total energy + Delta-G solvation = -3697.524710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.55346 -40.53844 -40.07141 -36.99928 -36.90782 -35.12117 -33.59643 -32.93515 -31.92627 -30.59795 -29.05106 -27.79354 -27.74630 -25.17086 -23.56992 -22.97713 -22.24982 -22.18839 -20.47224 -19.15198 -18.88611 -18.62345 -17.45526 -17.08665 -16.84442 -16.72404 -16.61037 -16.26008 -16.17435 -15.67096 -15.26216 -14.82230 -14.76942 -14.60210 -14.32140 -14.00406 -13.86398 -13.80660 -13.67080 -13.50318 -13.17093 -12.82535 -12.74345 -12.71938 -12.60470 -11.98205 -11.80563 -11.75354 -11.59567 -11.45120 -11.33356 -11.04629 -10.75740 -10.72628 -10.10252 -8.97631 -8.60707 -8.29017 -6.32801 -0.03150 0.54312 1.31206 1.37809 1.38684 1.51072 1.52187 1.94955 2.36739 2.37118 2.45726 2.78008 3.06738 3.61229 3.72769 3.86519 4.01396 4.10337 4.17773 4.20359 4.34862 4.36187 4.45388 4.47780 4.50574 4.53372 4.64052 4.66464 4.76280 4.88538 4.91279 4.96809 5.04034 5.05734 5.16717 5.31167 5.38291 5.47978 5.48924 5.53731 5.55927 5.65436 5.89332 6.28060 6.50005 6.55905 6.58787 6.75052 7.22707 7.31929 8.87527 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.002663 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.526382 B =10510.221152 C =11703.182550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.344 6.344 3 C 0.106 3.894 4 C -0.182 4.182 5 C -0.067 4.067 6 C 0.051 3.949 7 N -0.558 5.558 8 H 0.439 0.561 9 C 0.164 3.836 10 C -0.103 4.103 11 C -0.276 4.276 12 C 0.596 3.404 13 O -0.586 6.586 14 N -0.708 5.708 15 C 0.125 3.875 16 C -0.099 4.099 17 C -0.011 4.011 18 C -0.530 4.530 19 H 0.037 0.963 20 C 0.005 3.995 21 N -0.951 5.951 22 Si 0.947 3.053 23 H -0.269 1.269 24 H -0.283 1.283 25 H -0.247 1.247 26 C -0.054 4.054 27 C -0.155 4.155 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.412 0.588 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.024 0.976 42 H 0.018 0.982 43 H 0.266 0.734 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.281 17.838 13.438 34.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.259 6.259 3 C 0.060 3.940 4 C -0.201 4.201 5 C -0.087 4.087 6 C -0.053 4.053 7 N -0.162 5.162 8 H 0.280 0.720 9 C 0.049 3.951 10 C -0.160 4.160 11 C -0.286 4.286 12 C 0.383 3.617 13 O -0.467 6.467 14 N -0.358 5.358 15 C 0.002 3.998 16 C -0.137 4.137 17 C -0.049 4.049 18 C -0.568 4.568 19 H 0.055 0.945 20 C -0.192 4.192 21 N -0.592 5.592 22 Si 0.771 3.229 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.170 1.170 26 C -0.058 4.058 27 C -0.175 4.175 28 H 0.130 0.870 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.183 0.817 32 H 0.185 0.815 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.248 0.752 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -25.779 17.425 14.064 34.147 hybrid contribution 0.422 -0.521 -0.323 0.745 sum -25.358 16.904 13.740 33.430 Atomic orbital electron populations 1.23351 0.76239 1.05418 1.02569 1.86075 1.23693 1.26996 1.89121 1.18778 0.91270 0.85359 0.98608 1.21252 1.01262 0.90408 1.07222 1.20247 0.89438 0.99087 0.99911 1.18234 0.92220 0.86191 1.08696 1.41257 1.02991 1.08776 1.63175 0.71965 1.20568 0.86980 0.91879 0.95713 1.20755 0.91319 0.99017 1.04876 1.19542 0.91225 0.93349 1.24528 1.17619 0.82144 0.78904 0.83040 1.90758 1.64442 1.58284 1.33177 1.46064 1.30253 1.50684 1.08800 1.21362 0.86935 0.93702 0.97835 1.21477 0.98165 1.00246 0.93818 1.19466 0.94779 0.95634 0.95068 1.21457 1.12348 1.30244 0.92767 0.94472 1.25981 0.98480 0.96466 0.98271 1.70063 1.28131 1.39817 1.21144 0.85697 0.77589 0.79564 0.80072 1.19417 1.20878 1.16998 1.18564 0.91325 0.92746 1.03214 1.19559 0.92400 0.96421 1.09074 0.87025 0.91222 0.91207 0.81678 0.81464 0.88780 0.90323 0.87006 0.75206 0.91713 0.92808 0.92202 0.91385 0.95772 0.96395 0.92493 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -7.76 10.49 -93.21 -0.98 -8.74 16 3 C 0.11 2.45 6.68 22.49 0.15 2.60 16 4 C -0.18 -2.81 9.01 22.38 0.20 -2.61 16 5 C -0.07 -0.91 10.06 22.36 0.22 -0.68 16 6 C 0.05 0.97 7.26 38.88 0.28 1.25 16 7 N -0.56 -7.56 5.99 -175.28 -1.05 -8.62 16 8 H 0.44 2.13 8.96 -92.70 -0.83 1.30 16 9 C 0.16 3.07 7.12 41.58 0.30 3.37 16 10 C -0.10 -1.30 10.20 71.24 0.73 -0.57 16 11 C -0.28 -7.56 6.02 -19.02 -0.11 -7.67 16 12 C 0.60 19.84 7.16 86.51 0.62 20.46 16 13 O -0.59 -24.32 17.11 -4.27 -0.07 -24.39 16 14 N -0.71 -21.55 5.55 -466.89 -2.59 -24.14 16 15 C 0.13 4.33 5.67 86.38 0.49 4.82 16 16 C -0.10 -3.79 5.27 30.59 0.16 -3.62 16 17 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 18 C -0.53 -30.74 9.66 25.60 0.25 -30.49 16 19 H 0.04 2.34 7.99 -2.91 -0.02 2.31 16 20 C 0.00 0.28 5.47 84.65 0.46 0.75 16 21 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 22 Si 0.95 45.20 27.47 68.60 1.88 47.08 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 26 C -0.05 -1.45 6.36 -20.08 -0.13 -1.58 16 27 C -0.15 -4.47 10.03 22.51 0.23 -4.24 16 28 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.55 7.65 -2.39 -0.02 0.53 16 30 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16 31 H 0.17 1.37 6.26 -2.91 -0.02 1.35 16 32 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.24 7.85 -2.39 -0.02 1.22 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.41 10.67 8.45 -92.71 -0.78 9.89 16 37 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 42 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 43 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 44 H 0.10 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -82.82 372.15 1.93 -80.89 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.64 Total: 15.15 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 5.08 Total: -17.32 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -3.34 Total: -92.67 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -1.05 Total: -33.13 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -82.82 1.93 -80.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253418523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.456 kcal (2) G-P(sol) polarization free energy of solvation -82.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds