Wall clock time and date at job start Fri Apr 10 2020 23:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21582 * 119.99734 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99612 * 180.02562 * 17 16 15 20 20 C 1.46503 * 119.99863 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47393 * 179.97438 * 20 19 17 22 22 C 1.54635 * 111.03564 * 287.02242 * 21 20 19 23 23 C 1.51100 * 104.72303 * 217.33199 * 22 21 20 24 24 C 1.30524 * 111.10789 * 16.43760 * 23 22 21 25 25 C 1.51109 * 111.10308 * 0.02562 * 24 23 22 26 26 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 30 30 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 0.96999 * 120.00705 * 359.97438 * 19 17 16 35 35 H 1.08998 * 109.46820 * 299.99754 * 20 19 17 36 36 H 1.08998 * 109.47071 * 59.99317 * 20 19 17 37 37 H 1.08999 * 110.91198 * 51.03205 * 21 20 19 38 38 H 1.08995 * 110.38972 * 336.14522 * 22 21 20 39 39 H 1.09002 * 110.38655 * 98.52198 * 22 21 20 40 40 H 1.08002 * 124.44569 * 196.46215 * 23 22 21 41 41 H 1.07999 * 124.45376 * 180.02562 * 24 23 22 42 42 H 1.08993 * 110.38858 * 224.75215 * 25 24 23 43 43 H 1.08996 * 110.38523 * 102.36976 * 25 24 23 44 44 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6661 -8.9860 -0.9961 18 8 0.3108 -9.5973 -0.0070 19 7 0.4556 -9.5060 -2.2216 20 6 -0.2029 -10.8071 -2.3620 21 6 -0.3185 -11.1629 -3.8456 22 6 -1.3983 -10.3012 -4.5404 23 6 -2.0607 -11.2363 -5.5252 24 6 -1.7866 -12.4820 -5.2480 25 6 -0.8961 -12.5854 -4.0316 26 6 1.4365 -4.7345 0.2253 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5471 0.1902 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0433 32 1 0.5456 -7.0924 0.9734 33 1 1.5547 -7.3009 -1.6561 34 1 0.7394 -9.0185 -3.0107 35 1 0.3850 -11.5690 -1.8501 36 1 -1.1987 -10.7598 -1.9213 37 1 0.6446 -11.0627 -4.3459 38 1 -2.1242 -9.9413 -3.8113 39 1 -0.9370 -9.4635 -5.0635 40 1 -2.6795 -10.9160 -6.3505 41 1 -2.1487 -13.3278 -5.8137 42 1 -0.0929 -13.3006 -4.2087 43 1 -1.4791 -12.8764 -3.1579 44 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261789454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:19:06 Heat of formation + Delta-G solvation = -21.254111 kcal Electronic energy + Delta-G solvation = -24597.330186 eV Core-core repulsion = 20901.374386 eV Total energy + Delta-G solvation = -3695.955800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13758 -39.22471 -38.84809 -36.84760 -34.82906 -34.35294 -32.34488 -31.11428 -29.99643 -29.07980 -28.52160 -26.16256 -25.29737 -24.36629 -21.72058 -21.02547 -20.82417 -20.54586 -19.15124 -18.45430 -17.62795 -17.08526 -16.59243 -16.25232 -15.68146 -15.21276 -15.10266 -14.65150 -14.47469 -14.21691 -13.94005 -13.66725 -13.59900 -13.27337 -13.08082 -12.69070 -12.49569 -12.38877 -12.18151 -11.94138 -11.68225 -11.52947 -11.51695 -11.38724 -11.23120 -10.95853 -10.81602 -10.69600 -10.47219 -10.18029 -9.41549 -9.28922 -9.24382 -8.90687 -8.74899 -8.25681 -7.33688 -6.50212 -4.09656 1.86452 1.91117 2.25983 2.85214 3.09083 3.10507 3.15949 3.27794 3.91599 4.13246 4.21310 4.34825 4.48308 4.58710 4.90664 4.91707 4.94066 5.06283 5.17064 5.28249 5.34069 5.39847 5.42855 5.52426 5.54798 5.63235 5.66508 5.77527 5.85014 5.91062 5.95309 6.07174 6.17231 6.24900 6.39029 6.52491 6.55107 6.57665 6.81396 6.92555 7.00539 7.19163 7.26942 7.35076 7.70363 7.94070 8.05415 8.64784 8.95284 9.64126 10.67632 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.002148 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.984126 B =13033.405534 C =14028.261380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.177 6.177 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.072 4.072 15 C 0.187 3.813 16 N -0.737 5.737 17 C 0.703 3.297 18 O -0.596 6.596 19 N -0.749 5.749 20 C 0.150 3.850 21 C -0.107 4.107 22 C -0.100 4.100 23 C -0.165 4.165 24 C -0.170 4.170 25 C -0.092 4.092 26 C -0.170 4.170 27 H 0.270 0.730 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.399 0.601 34 H 0.396 0.604 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.279 -19.770 -9.316 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.214 4.214 14 C -0.073 4.073 15 C 0.063 3.937 16 N -0.391 5.391 17 C 0.403 3.597 18 O -0.475 6.475 19 N -0.405 5.405 20 C 0.025 3.975 21 C -0.125 4.125 22 C -0.137 4.137 23 C -0.183 4.183 24 C -0.188 4.188 25 C -0.130 4.130 26 C -0.190 4.190 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.232 0.768 34 H 0.230 0.770 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.506 -20.118 -8.376 21.798 hybrid contribution 0.747 1.382 -0.851 1.787 sum 1.253 -18.736 -9.227 20.923 Atomic orbital electron populations 1.70050 1.05965 1.27646 1.45887 1.25306 0.95861 0.98879 0.96500 0.85638 0.79117 0.80320 0.78295 1.19092 1.20132 1.20097 1.21372 0.91819 0.80757 1.52942 0.88983 1.83983 1.34284 1.11400 1.78333 1.19332 0.90265 0.88080 0.92722 1.21247 0.93841 0.99111 1.10273 1.20747 0.98565 0.92274 0.97933 1.20487 0.93368 0.97096 1.10406 1.19286 0.93468 0.92874 1.01675 1.19992 0.99904 0.90931 0.82828 1.45256 1.64052 1.19890 1.09937 1.15948 0.78860 0.81333 0.83594 1.90913 1.57689 1.61956 1.36903 1.45085 1.65877 1.22678 1.06873 1.21167 0.97798 0.83904 0.94581 1.22310 0.99437 0.95753 0.95041 1.21511 0.97150 0.97835 0.97206 1.23315 1.00401 0.95345 0.99215 1.23259 1.00063 0.97559 0.97958 1.21332 0.98369 0.96182 0.97124 1.20097 0.99464 0.89831 1.09638 0.92004 0.85478 0.87301 0.87489 0.91138 0.91041 0.76757 0.77034 0.91507 0.91470 0.89502 0.90126 0.90954 0.85918 0.85880 0.90833 0.90134 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 2 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.39 -10.72 9.49 30.89 0.29 -10.42 16 8 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 9 O -0.18 -4.91 9.76 0.05 0.00 -4.90 16 10 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 11 C -0.23 -4.67 9.17 -39.39 -0.36 -5.03 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.19 -3.15 9.70 -39.54 -0.38 -3.53 16 14 C -0.07 -1.22 5.25 -104.65 -0.55 -1.76 16 15 C 0.19 2.79 5.80 -5.19 -0.03 2.76 16 16 N -0.74 -9.74 5.55 -66.42 -0.37 -10.10 16 17 C 0.70 9.85 8.57 -86.92 -0.74 9.10 16 18 O -0.60 -10.71 16.34 5.29 0.09 -10.63 16 19 N -0.75 -7.54 5.51 -65.22 -0.36 -7.90 16 20 C 0.15 1.35 4.99 -4.04 -0.02 1.33 16 21 C -0.11 -0.73 3.16 -88.89 -0.28 -1.01 16 22 C -0.10 -0.71 6.33 -26.83 -0.17 -0.88 16 23 C -0.16 -1.15 10.77 -35.70 -0.38 -1.53 16 24 C -0.17 -1.12 10.78 -35.69 -0.38 -1.51 16 25 C -0.09 -0.59 6.38 -26.81 -0.17 -0.76 16 26 C -0.17 -3.43 9.65 -39.40 -0.38 -3.81 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 29 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 33 H 0.40 4.60 8.48 -40.82 -0.35 4.25 16 34 H 0.40 3.03 8.49 -40.82 -0.35 2.68 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.69 7.92 -51.93 -0.41 0.27 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.64 7.74 -51.93 -0.40 0.24 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.51 7.89 -51.93 -0.41 0.10 16 44 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -32.32 372.60 -9.88 -42.20 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.27 Total: 9.34 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -4.32 Total: -14.61 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.03 Total: -42.12 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.09 Total: -15.53 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.32 -9.88 -42.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261789454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.941 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds