Wall clock time and date at job start Fri Apr 10 2020 23:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21582 * 119.99734 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99612 * 180.02562 * 17 16 15 20 20 C 1.46503 * 119.99863 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47393 * 179.97438 * 20 19 17 22 22 C 1.54635 * 111.03564 * 287.02242 * 21 20 19 23 23 C 1.51100 * 104.72303 * 217.33199 * 22 21 20 24 24 C 1.30524 * 111.10789 * 16.43760 * 23 22 21 25 25 C 1.51109 * 111.10308 * 0.02562 * 24 23 22 26 26 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 30 30 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 0.96999 * 120.00705 * 359.97438 * 19 17 16 35 35 H 1.08998 * 109.46820 * 299.99754 * 20 19 17 36 36 H 1.08998 * 109.47071 * 59.99317 * 20 19 17 37 37 H 1.08999 * 110.91198 * 51.03205 * 21 20 19 38 38 H 1.08995 * 110.38972 * 336.14522 * 22 21 20 39 39 H 1.09002 * 110.38655 * 98.52198 * 22 21 20 40 40 H 1.08002 * 124.44569 * 196.46215 * 23 22 21 41 41 H 1.07999 * 124.45376 * 180.02562 * 24 23 22 42 42 H 1.08993 * 110.38858 * 224.75215 * 25 24 23 43 43 H 1.08996 * 110.38523 * 102.36976 * 25 24 23 44 44 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6661 -8.9860 -0.9961 18 8 0.3108 -9.5973 -0.0070 19 7 0.4556 -9.5060 -2.2216 20 6 -0.2029 -10.8071 -2.3620 21 6 -0.3185 -11.1629 -3.8456 22 6 -1.3983 -10.3012 -4.5404 23 6 -2.0607 -11.2363 -5.5252 24 6 -1.7866 -12.4820 -5.2480 25 6 -0.8961 -12.5854 -4.0316 26 6 1.4365 -4.7345 0.2253 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5471 0.1902 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0433 32 1 0.5456 -7.0924 0.9734 33 1 1.5547 -7.3009 -1.6561 34 1 0.7394 -9.0185 -3.0107 35 1 0.3850 -11.5690 -1.8501 36 1 -1.1987 -10.7598 -1.9213 37 1 0.6446 -11.0627 -4.3459 38 1 -2.1242 -9.9413 -3.8113 39 1 -0.9370 -9.4635 -5.0635 40 1 -2.6795 -10.9160 -6.3505 41 1 -2.1487 -13.3278 -5.8137 42 1 -0.0929 -13.3006 -4.2087 43 1 -1.4791 -12.8764 -3.1579 44 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261789454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:19:05 Heat of formation + Delta-G solvation = -42.124164 kcal Electronic energy + Delta-G solvation = -24598.235180 eV Core-core repulsion = 20901.374386 eV Total energy + Delta-G solvation = -3696.860793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.23635 -40.71153 -39.64396 -38.47604 -35.86626 -35.54953 -34.28190 -32.36418 -31.03639 -30.53428 -29.05452 -27.61141 -26.91155 -25.32308 -23.25692 -22.46422 -22.00465 -21.23306 -19.90148 -19.57505 -19.17649 -18.67713 -17.53200 -17.02248 -16.80563 -16.64742 -16.28485 -16.10509 -15.99829 -15.56777 -15.32770 -14.97795 -14.87363 -14.34923 -14.19136 -13.89676 -13.66011 -13.61620 -13.30710 -13.02982 -12.99744 -12.58730 -12.54267 -12.34617 -12.26986 -12.15006 -12.08289 -12.02933 -11.84493 -11.41230 -11.19819 -10.81855 -10.38844 -9.78616 -9.76473 -9.74421 -9.03006 -8.47048 -6.15424 0.37414 0.71058 1.35983 1.39603 1.43665 1.54084 1.80720 2.15373 2.17496 2.81691 3.12778 3.34989 3.44186 3.63317 3.69792 3.84398 3.91051 4.10428 4.31923 4.35159 4.40175 4.43910 4.54015 4.55006 4.65260 4.72988 4.75735 4.85447 4.86726 4.91314 5.02698 5.04660 5.12423 5.13450 5.26508 5.32910 5.42477 5.52503 5.63040 5.67560 5.71345 5.72840 5.98488 6.01858 6.02631 6.17711 6.97925 7.07518 7.56796 7.78551 8.76289 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.002148 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.984126 B =13033.405534 C =14028.261380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.249 1.249 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.411 4.411 8 H 0.104 0.896 9 O -0.233 6.233 10 C 0.111 3.889 11 C -0.233 4.233 12 C -0.070 4.070 13 C -0.167 4.167 14 C -0.057 4.057 15 C 0.193 3.807 16 N -0.730 5.730 17 C 0.700 3.300 18 O -0.637 6.637 19 N -0.733 5.733 20 C 0.152 3.848 21 C -0.096 4.096 22 C -0.102 4.102 23 C -0.179 4.179 24 C -0.171 4.171 25 C -0.095 4.095 26 C -0.181 4.181 27 H 0.272 0.728 28 H 0.121 0.879 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.409 0.591 34 H 0.410 0.590 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.072 -21.651 -10.184 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.172 1.172 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.061 3.939 11 C -0.253 4.253 12 C -0.088 4.088 13 C -0.186 4.186 14 C -0.058 4.058 15 C 0.070 3.930 16 N -0.385 5.385 17 C 0.400 3.600 18 O -0.519 6.519 19 N -0.389 5.389 20 C 0.027 3.973 21 C -0.115 4.115 22 C -0.139 4.139 23 C -0.196 4.196 24 C -0.189 4.189 25 C -0.132 4.132 26 C -0.201 4.201 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.167 0.833 30 H 0.166 0.834 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.244 0.756 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.341 -22.049 -9.294 24.160 hybrid contribution -0.037 1.588 -0.575 1.690 sum 3.304 -20.461 -9.869 22.956 Atomic orbital electron populations 1.70197 1.08055 1.28691 1.49008 1.26599 0.96843 1.02803 0.95977 0.84522 0.78350 0.74865 0.78442 1.17246 1.19430 1.19599 1.21867 0.92562 0.81338 1.52949 0.87852 1.83949 1.35959 1.12564 1.81457 1.19861 0.91673 0.87823 0.94515 1.21377 0.92957 1.00441 1.10481 1.21165 1.00444 0.91107 0.96039 1.20999 0.93014 0.98273 1.06266 1.19435 0.93966 0.92456 0.99940 1.19853 0.99410 0.90000 0.83783 1.45055 1.64006 1.19777 1.09686 1.16087 0.78609 0.81192 0.84089 1.90889 1.59368 1.63052 1.38572 1.44984 1.64832 1.22903 1.06163 1.21211 0.96770 0.83146 0.96128 1.22232 0.99964 0.96061 0.93259 1.21515 0.97052 0.98232 0.97112 1.23443 1.01001 0.95533 0.99663 1.23460 0.99659 0.97887 0.97859 1.21375 0.98758 0.96012 0.97066 1.20221 0.99392 0.90201 1.10258 0.91908 0.86172 0.83309 0.83390 0.89744 0.92321 0.75585 0.75353 0.91819 0.92903 0.88274 0.91418 0.90402 0.85202 0.84575 0.89610 0.90321 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.17 13.67 21.61 0.30 -55.87 16 2 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 3 Si 1.02 42.18 29.55 68.60 2.03 44.21 16 4 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.41 -23.41 9.49 67.92 0.64 -22.77 16 8 H 0.10 5.36 5.21 -2.91 -0.02 5.34 16 9 O -0.23 -13.69 9.76 -22.74 -0.22 -13.92 16 10 C 0.11 5.33 6.65 22.58 0.15 5.48 16 11 C -0.23 -9.51 9.17 22.39 0.21 -9.30 16 12 C -0.07 -2.15 10.04 22.25 0.22 -1.93 16 13 C -0.17 -4.67 9.70 22.30 0.22 -4.45 16 14 C -0.06 -1.81 5.25 -19.88 -0.10 -1.91 16 15 C 0.19 5.39 5.80 85.63 0.50 5.88 16 16 N -0.73 -17.83 5.55 -482.31 -2.68 -20.51 16 17 C 0.70 18.61 8.57 179.05 1.53 20.15 16 18 O -0.64 -22.40 16.34 -3.97 -0.06 -22.46 16 19 N -0.73 -13.56 5.51 -478.54 -2.64 -16.20 16 20 C 0.15 2.56 4.99 86.38 0.43 2.99 16 21 C -0.10 -1.14 3.16 -9.67 -0.03 -1.17 16 22 C -0.10 -1.34 6.33 30.53 0.19 -1.14 16 23 C -0.18 -2.24 10.77 26.26 0.28 -1.96 16 24 C -0.17 -1.95 10.78 26.27 0.28 -1.67 16 25 C -0.09 -1.04 6.38 30.54 0.19 -0.84 16 26 C -0.18 -7.39 9.65 22.39 0.22 -7.17 16 27 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.12 5.00 5.64 -2.91 -0.02 4.99 16 29 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 30 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 32 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 33 H 0.41 8.43 8.48 -92.71 -0.79 7.65 16 34 H 0.41 5.35 8.49 -92.71 -0.79 4.56 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.07 7.92 -2.39 -0.02 1.05 16 37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.06 7.74 -2.39 -0.02 1.04 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.13 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 42 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 0.91 7.89 -2.39 -0.02 0.89 16 44 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -74.82 372.60 1.58 -73.24 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.54 Total: 32.26 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 5.40 Total: -20.75 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -5.02 Total: -92.58 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.29 Total: -36.38 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -74.82 1.58 -73.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261789454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.119 kcal (2) G-P(sol) polarization free energy of solvation -74.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds