Wall clock time and date at job start Fri Apr 10 2020 23:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00039 * 2 1 4 4 N 1.46502 * 109.47032 * 125.00154 * 3 2 1 5 5 C 1.46507 * 119.99728 * 274.99866 * 4 3 2 6 6 C 1.50699 * 109.46806 * 275.00046 * 5 4 3 7 7 H 1.08000 * 120.00182 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99977 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99854 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47320 * 0.02562 * 10 8 6 12 12 H 1.48509 * 109.46917 * 120.00214 * 10 8 6 13 13 H 1.48502 * 109.47388 * 240.00145 * 10 8 6 14 14 S 1.65595 * 120.00375 * 94.99982 * 4 3 2 15 15 O 1.42093 * 104.27935 * 153.92575 * 14 4 3 16 16 O 1.42105 * 104.27413 * 26.06626 * 14 4 3 17 17 C 1.81401 * 104.44822 * 270.00044 * 14 4 3 18 18 C 1.52997 * 109.47149 * 179.97438 * 17 14 4 19 19 C 1.52992 * 109.47482 * 179.97438 * 18 17 14 20 20 N 1.46901 * 109.47859 * 179.97438 * 19 18 17 21 21 C 1.48533 * 110.99670 * 52.60024 * 20 19 18 22 22 C 1.54936 * 103.22827 * 159.72645 * 21 20 19 23 23 C 1.54602 * 102.91755 * 322.58844 * 22 21 20 24 24 C 1.47895 * 111.00585 * 169.99973 * 20 19 18 25 25 H 1.07997 * 119.99797 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00058 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99797 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47291 * 4.99842 * 3 2 1 29 29 H 1.08997 * 109.47113 * 245.00107 * 3 2 1 30 30 H 1.08999 * 109.47243 * 34.99985 * 5 4 3 31 31 H 1.08993 * 109.46936 * 155.00434 * 5 4 3 32 32 H 0.97004 * 119.99793 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.47085 * 299.99812 * 17 14 4 34 34 H 1.09001 * 109.47417 * 59.99938 * 17 14 4 35 35 H 1.09002 * 109.47153 * 299.99990 * 18 17 14 36 36 H 1.08998 * 109.47533 * 59.99620 * 18 17 14 37 37 H 1.09002 * 109.47103 * 300.00247 * 19 18 17 38 38 H 1.09001 * 109.47066 * 60.00169 * 19 18 17 39 39 H 1.09002 * 110.67270 * 278.16471 * 21 20 19 40 40 H 1.08998 * 110.66667 * 41.29259 * 21 20 19 41 41 H 1.09002 * 110.72666 * 204.23420 * 22 21 20 42 42 H 1.08998 * 110.72369 * 80.94172 * 22 21 20 43 43 H 1.09001 * 110.30688 * 263.03605 * 23 22 21 44 44 H 1.08996 * 110.30747 * 140.87557 * 23 22 21 45 45 H 1.08994 * 109.91810 * 333.51090 * 24 20 19 46 46 H 1.08999 * 109.91451 * 94.60787 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5285 1.7621 2.4523 6 6 2.5992 3.2646 2.5449 7 1 2.9548 3.8413 1.7039 8 6 2.2089 3.9029 3.7031 9 7 1.7755 3.2006 4.7270 10 14 2.2972 5.7653 3.8182 11 1 2.8158 6.3163 2.5403 12 1 0.9402 6.3101 4.0771 13 1 3.2053 6.1502 4.9284 14 16 4.5713 0.8758 0.9174 15 8 5.2788 1.5736 1.9331 16 8 4.8254 1.1280 -0.4578 17 6 4.5759 -0.9076 1.2488 18 6 5.9951 -1.4539 1.0810 19 6 5.9991 -2.9580 1.3611 20 7 7.3617 -3.4827 1.1993 21 6 8.3322 -2.7022 2.0087 22 6 9.5381 -3.6657 2.1426 23 6 8.8612 -5.0475 2.2936 24 6 7.4553 -4.8749 1.6897 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3587 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 1.4983 1.4371 2.5983 31 1 3.1613 1.3205 3.2220 32 1 1.5013 3.6497 5.5419 33 1 4.2347 -1.0886 2.2682 34 1 3.9086 -1.4092 0.5479 35 1 6.3359 -1.2730 0.0615 36 1 6.6628 -0.9525 1.7815 37 1 5.6585 -3.1386 2.3807 38 1 5.3315 -3.4598 0.6608 39 1 8.6239 -1.7910 1.4863 40 1 7.9158 -2.4685 2.9885 41 1 10.1270 -3.4259 3.0279 42 1 10.1573 -3.6355 1.2461 43 1 8.7899 -5.3207 3.3464 44 1 9.4194 -5.8044 1.7426 45 1 6.6986 -5.0510 2.4541 46 1 7.3156 -5.5702 0.8620 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601420773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:20:00 Heat of formation + Delta-G solvation = -50.370901 kcal Electronic energy + Delta-G solvation = -25082.337448 eV Core-core repulsion = 21520.563000 eV Total energy + Delta-G solvation = -3561.774447 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.23287 -36.61252 -36.31485 -35.28819 -34.80172 -33.19784 -31.87835 -31.12488 -29.12856 -27.46846 -25.98009 -24.89553 -22.72765 -22.18082 -21.06521 -20.58891 -19.66904 -18.20458 -17.03602 -16.52876 -16.40493 -16.26870 -15.90052 -15.35530 -15.29072 -14.59102 -14.42078 -14.26278 -13.71653 -13.42342 -13.34124 -13.02029 -12.76340 -12.41965 -12.31589 -12.03016 -11.83024 -11.71310 -11.69191 -11.55703 -11.43442 -11.35782 -11.29185 -11.09739 -10.96958 -10.87686 -10.79393 -10.67906 -10.52296 -10.20876 -9.96954 -9.70872 -9.13740 -8.65709 -8.43130 -8.06673 -6.04848 -4.07690 0.81239 2.49972 3.32226 3.37887 3.40102 3.46866 3.73574 4.32883 4.42862 4.45134 4.46751 4.54271 4.68554 4.81972 4.91820 4.94782 5.05146 5.16185 5.25079 5.30365 5.33289 5.41085 5.42794 5.47994 5.52318 5.58190 5.59256 5.67400 5.73308 5.77658 5.89879 5.92499 5.96291 6.08941 6.29954 6.46908 6.64026 6.79314 6.83765 6.96887 7.22919 7.39691 7.60188 7.93249 8.22755 8.95082 9.57056 11.03938 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.003436 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.932886 B = 8146.002364 C = 9076.295521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.173 4.173 3 C 0.144 3.856 4 N -0.980 5.980 5 C 0.256 3.744 6 C -0.522 4.522 7 H 0.062 0.938 8 C 0.061 3.939 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.283 1.283 14 S 2.604 3.396 15 O -0.936 6.936 16 O -0.972 6.972 17 C -0.642 4.642 18 C -0.110 4.110 19 C 0.055 3.945 20 N -0.520 5.520 21 C 0.025 3.975 22 C -0.124 4.124 23 C -0.131 4.131 24 C 0.034 3.966 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.262 0.738 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.045 0.955 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 -16.261 -6.429 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.193 4.193 3 C 0.018 3.982 4 N -0.818 5.818 5 C 0.135 3.865 6 C -0.562 4.562 7 H 0.080 0.920 8 C -0.141 4.141 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.209 1.209 14 S 2.695 3.305 15 O -0.926 6.926 16 O -0.963 6.963 17 C -0.769 4.769 18 C -0.149 4.149 19 C -0.074 4.074 20 N -0.245 5.245 21 C -0.102 4.102 22 C -0.162 4.162 23 C -0.170 4.170 24 C -0.094 4.094 25 H 0.118 0.882 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.939 -15.640 -7.018 18.892 hybrid contribution -0.803 0.183 1.388 1.614 sum 7.136 -15.458 -5.630 17.932 Atomic orbital electron populations 1.23797 0.95829 1.01713 1.00497 1.23512 0.96706 0.99031 1.00005 1.20358 0.93300 0.95226 0.89306 1.57450 1.27310 1.78971 1.18028 1.19073 0.96071 0.95391 0.76012 1.21517 1.43006 0.91797 0.99853 0.92015 1.24929 0.95083 0.98664 0.95448 1.69931 1.44165 1.35477 1.04130 0.86465 0.77515 0.85306 0.78301 1.19608 1.21051 1.20852 1.05166 0.74241 0.76836 0.74218 1.93630 1.71374 1.68213 1.59410 1.93511 1.84469 1.83944 1.34345 1.30872 1.04550 1.29549 1.11977 1.21321 0.93299 0.96429 1.03828 1.22270 0.90207 0.94512 1.00374 1.64829 1.05626 1.02064 1.51931 1.23350 0.92646 0.97722 0.96500 1.22490 0.97297 0.94209 1.02242 1.22400 0.95664 0.98075 1.00821 1.22876 0.96791 0.91020 0.98697 0.88165 0.88946 0.88137 0.89051 0.89261 0.94539 0.94534 0.92823 0.85175 0.85564 0.89664 0.90415 0.94085 0.90170 0.89524 0.93229 0.90962 0.90659 0.91535 0.91023 0.93711 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 14.32 29.01 0.42 -1.97 16 2 C -0.17 -2.48 9.84 -36.03 -0.35 -2.83 16 3 C 0.14 2.48 6.09 -5.19 -0.03 2.45 16 4 N -0.98 -19.78 2.68 -116.95 -0.31 -20.09 16 5 C 0.26 6.30 5.01 -5.19 -0.03 6.27 16 6 C -0.52 -14.59 9.38 -34.44 -0.32 -14.91 16 7 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 10 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 S 2.60 49.21 5.37 -107.50 -0.58 48.63 16 15 O -0.94 -21.73 16.99 -57.54 -0.98 -22.70 16 16 O -0.97 -19.53 16.53 -57.54 -0.95 -20.48 16 17 C -0.64 -8.72 6.18 37.16 0.23 -8.49 16 18 C -0.11 -1.39 4.88 -26.74 -0.13 -1.52 16 19 C 0.06 0.61 5.03 -3.83 -0.02 0.59 16 20 N -0.52 -5.62 5.40 -230.47 -1.24 -6.87 16 21 C 0.03 0.26 5.10 -1.90 -0.01 0.25 16 22 C -0.12 -1.02 7.06 -24.87 -0.18 -1.20 16 23 C -0.13 -1.00 6.93 -25.37 -0.18 -1.18 16 24 C 0.03 0.31 6.69 -2.76 -0.02 0.29 16 25 H 0.10 1.33 7.84 -52.49 -0.41 0.92 16 26 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.10 1.24 7.24 -52.49 -0.38 0.86 16 28 H 0.09 1.63 7.76 -51.93 -0.40 1.23 16 29 H 0.09 1.46 6.82 -51.93 -0.35 1.11 16 30 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 31 H 0.04 0.95 7.61 -51.93 -0.40 0.55 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.13 1.69 8.14 -51.92 -0.42 1.26 16 34 H 0.13 1.42 7.32 -51.92 -0.38 1.04 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.99 6.79 -51.93 -0.35 0.64 16 37 H 0.04 0.44 7.81 -51.93 -0.41 0.04 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.89 7.67 -51.93 -0.40 0.49 16 40 H 0.05 0.52 8.00 -51.93 -0.42 0.10 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.04 0.39 7.57 -51.93 -0.39 0.00 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -33.32 382.94 -11.35 -44.67 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.06 Total: 0.15 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -0.72 Total: -20.63 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.82 Total: -52.30 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -1.93 Total: -43.18 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 49.21 SS G_CDS: -0.58 Total: 48.63 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.32 -11.35 -44.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601420773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.696 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds