Wall clock time and date at job start Fri Apr 10 2020 23:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47574 * 2 1 4 4 H 1.08993 * 109.47033 * 179.82108 * 3 2 1 5 5 C 1.50695 * 109.46977 * 299.82740 * 3 2 1 6 6 H 1.08000 * 119.99961 * 119.99662 * 5 3 2 7 7 C 1.37876 * 120.00240 * 300.00066 * 5 3 2 8 8 N 1.31519 * 119.99827 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00362 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47250 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47183 * 119.99549 * 9 7 5 12 12 H 1.48501 * 109.47165 * 239.99702 * 9 7 5 13 13 N 1.46907 * 109.46635 * 59.82382 * 3 2 1 14 14 C 1.46903 * 110.99485 * 85.93586 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.54348 * 14 13 3 16 16 C 1.34542 * 126.08618 * 94.71211 * 15 14 13 17 17 O 1.34766 * 107.27578 * 179.87765 * 16 15 14 18 18 C 1.34430 * 107.69122 * 0.38114 * 17 16 15 19 19 C 1.47839 * 125.72367 * 179.73599 * 18 17 16 20 20 C 1.39606 * 120.11368 * 179.75201 * 19 18 17 21 21 C 1.37979 * 119.96050 * 179.74293 * 20 19 18 22 22 C 1.38278 * 120.20437 * 0.51629 * 21 20 19 23 23 C 1.38819 * 120.24047 * 359.76454 * 22 21 20 24 24 O 1.35905 * 119.98628 * 179.97438 * 23 22 21 25 25 C 1.42898 * 116.99915 * 0.02562 * 24 23 22 26 26 C 1.38494 * 120.02873 * 359.97438 * 23 22 21 27 27 N 1.31216 * 108.54874 * 359.76353 * 18 17 16 28 28 H 1.09000 * 109.46758 * 55.58744 * 1 2 3 29 29 H 1.08996 * 109.47164 * 295.59392 * 1 2 3 30 30 H 1.08992 * 109.47287 * 175.58980 * 1 2 3 31 31 H 1.08998 * 109.46890 * 120.00138 * 2 1 3 32 32 H 1.08997 * 109.47002 * 239.99756 * 2 1 3 33 33 H 0.96995 * 120.00179 * 180.02562 * 8 7 5 34 34 H 1.00904 * 110.99378 * 209.88144 * 13 3 2 35 35 H 1.08994 * 109.46864 * 295.53513 * 14 13 3 36 36 H 1.08994 * 109.47486 * 55.54200 * 14 13 3 37 37 H 1.08006 * 126.35757 * 0.02562 * 16 15 14 38 38 H 1.07996 * 120.01755 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.89074 * 180.25655 * 21 20 19 40 40 H 1.08005 * 119.87942 * 179.74509 * 22 21 20 41 41 H 1.08997 * 109.47774 * 300.00784 * 25 24 23 42 42 H 1.09007 * 109.46705 * 60.00877 * 25 24 23 43 43 H 1.08998 * 109.47176 * 180.02562 * 25 24 23 44 44 H 1.07995 * 120.09965 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4424 0.0032 5 6 1.5414 2.1516 -1.2326 6 1 0.9202 3.0298 -1.1361 7 6 1.8779 1.6793 -2.4834 8 7 2.6347 0.6101 -2.6009 9 14 1.2603 2.5587 -4.0113 10 1 0.4341 3.7259 -3.6107 11 1 2.4179 3.0242 -4.8166 12 1 0.4373 1.6250 -4.8212 13 7 1.5470 2.1362 1.1974 14 6 2.4394 1.9094 2.3421 15 6 1.9632 2.7218 3.5187 16 6 1.1591 2.2892 4.5069 17 8 0.9796 3.3197 5.3567 18 6 1.6669 4.3702 4.8759 19 6 1.7401 5.7105 5.4956 20 6 2.4965 6.7190 4.8959 21 6 2.5584 7.9703 5.4742 22 6 1.8819 8.2262 6.6527 23 6 1.1320 7.2278 7.2594 24 8 0.4696 7.4849 8.4179 25 6 0.5888 8.8040 8.9544 26 6 1.0587 5.9699 6.6846 27 7 2.2612 4.0067 3.7640 28 1 -0.3633 0.5808 -0.8478 29 1 -0.3633 0.4439 0.9268 30 1 -0.3633 -1.0245 -0.0790 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 2.8718 0.2780 -3.4808 34 1 1.4288 3.1226 1.0208 35 1 2.4322 0.8515 2.6043 36 1 3.4528 2.2116 2.0782 37 1 0.7380 1.2993 4.6027 38 1 3.0298 6.5211 3.9779 39 1 3.1405 8.7509 5.0070 40 1 1.9373 9.2064 7.1030 41 1 1.6370 9.0182 9.1626 42 1 0.2069 9.5258 8.2323 43 1 0.0136 8.8741 9.8776 44 1 0.4760 5.1923 7.1558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602841595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:20:05 Heat of formation + Delta-G solvation = 10.999457 kcal Electronic energy + Delta-G solvation = -25135.983869 eV Core-core repulsion = 21441.426688 eV Total energy + Delta-G solvation = -3694.557180 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.14820 -40.36514 -37.75563 -36.52032 -34.75304 -32.88244 -32.04795 -30.99068 -30.46157 -28.94068 -27.68189 -26.61270 -24.46813 -23.85833 -23.09359 -22.77142 -21.08954 -20.65449 -19.01615 -18.54058 -16.92594 -16.53717 -16.50964 -16.25469 -16.14868 -16.07485 -15.17947 -14.83566 -14.44444 -14.09462 -13.97794 -13.70060 -13.49926 -13.16865 -13.10535 -12.61956 -12.45782 -12.15619 -11.97388 -11.69876 -11.61735 -11.38308 -11.27797 -11.09677 -10.93280 -10.69744 -10.42560 -10.38227 -10.10177 -9.75535 -9.66227 -9.37427 -8.77178 -8.65463 -8.45734 -8.18899 -7.25564 -6.00666 -4.05626 0.47484 1.13951 1.85498 2.66942 2.82043 2.88671 3.30045 3.38197 3.42720 3.57684 3.97478 4.42483 4.44379 4.63869 4.71481 4.75667 4.95115 4.99067 5.05745 5.07775 5.13939 5.28947 5.30553 5.53188 5.60367 5.73289 5.90441 5.92888 6.09869 6.10375 6.22231 6.29215 6.35370 6.46990 6.55068 6.68208 6.85835 7.01535 7.22627 7.29719 7.49330 7.74771 7.80740 7.84156 7.85380 8.27104 8.38492 8.65874 9.03007 9.58970 11.05355 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.002446 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.269934 B =11444.461160 C =12275.976235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.215 3.785 4 H 0.003 0.997 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.680 5.680 14 C 0.137 3.863 15 C 0.008 3.992 16 C -0.055 4.055 17 O -0.199 6.199 18 C 0.212 3.788 19 C 0.034 3.966 20 C -0.108 4.108 21 C -0.080 4.080 22 C -0.195 4.195 23 C 0.124 3.876 24 O -0.316 6.316 25 C 0.027 3.973 26 C -0.126 4.126 27 N -0.453 5.453 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.013 0.987 31 H 0.010 0.990 32 H 0.087 0.913 33 H 0.260 0.740 34 H 0.336 0.664 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.219 0.781 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 12.874 21.649 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.020 0.980 5 C -0.548 4.548 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.312 5.312 14 C 0.007 3.993 15 C -0.114 4.114 16 C -0.126 4.126 17 O -0.085 6.085 18 C 0.009 3.991 19 C 0.032 3.968 20 C -0.127 4.127 21 C -0.098 4.098 22 C -0.214 4.214 23 C 0.079 3.921 24 O -0.230 6.230 25 C -0.068 4.068 26 C -0.146 4.146 27 N -0.183 5.183 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.236 0.764 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.662 12.499 21.460 24.890 hybrid contribution 0.069 0.609 -0.776 0.989 sum -1.592 13.108 20.684 24.539 Atomic orbital electron populations 1.21450 0.97521 0.97409 1.01341 1.21447 0.95023 0.98184 0.99518 1.19183 0.93121 0.91451 0.85468 0.97958 1.21206 1.31497 1.11888 0.90256 0.92268 1.24881 0.95069 0.95029 0.98917 1.69891 1.36725 1.22787 1.23383 0.86514 0.78565 0.79711 0.83077 1.19781 1.21143 1.21019 1.60845 1.48005 1.16519 1.05802 1.20253 0.95001 0.96560 0.87474 1.21993 0.99743 0.90683 0.99004 1.24968 1.03320 0.92981 0.91378 1.84464 1.57818 1.19596 1.46655 1.23531 0.94698 0.89236 0.91627 1.16941 0.98978 0.86983 0.93856 1.21165 0.98911 0.91711 1.00952 1.20892 0.97951 0.96524 0.94455 1.21397 1.01959 0.99377 0.98710 1.18709 0.93120 0.93662 0.86575 1.86083 1.67861 1.32793 1.36253 1.23079 1.02253 0.82232 0.99239 1.20381 1.02743 0.95794 0.95724 1.70530 1.22090 1.12844 1.12811 0.92489 0.94034 0.96758 0.97149 0.89424 0.93024 0.84705 0.90122 0.94187 0.76418 0.83961 0.84750 0.85068 0.92548 0.92503 0.88139 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.16 0.35 -2.31 16 2 C -0.10 -2.47 5.59 -26.73 -0.15 -2.62 16 3 C 0.22 5.33 2.30 -68.86 -0.16 5.17 16 4 H 0.00 0.08 7.71 -51.93 -0.40 -0.32 16 5 C -0.51 -13.75 7.26 -34.44 -0.25 -14.00 16 6 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.08 11.32 55.43 0.63 -24.46 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.68 -14.53 5.64 -109.22 -0.62 -15.14 16 14 C 0.14 2.52 6.07 -4.97 -0.03 2.49 16 15 C 0.01 0.13 6.56 -82.88 -0.54 -0.42 16 16 C -0.06 -0.80 12.08 29.43 0.36 -0.44 16 17 O -0.20 -2.96 10.52 4.08 0.04 -2.91 16 18 C 0.21 3.28 7.90 -13.89 -0.11 3.17 16 19 C 0.03 0.44 5.87 -105.00 -0.62 -0.18 16 20 C -0.11 -1.25 9.68 -39.17 -0.38 -1.63 16 21 C -0.08 -0.73 10.03 -39.66 -0.40 -1.12 16 22 C -0.20 -1.68 9.03 -39.35 -0.36 -2.03 16 23 C 0.12 1.28 6.68 -39.27 -0.26 1.02 16 24 O -0.32 -2.99 10.49 -19.44 -0.20 -3.19 16 25 C 0.03 0.14 9.81 101.05 0.99 1.13 16 26 C -0.13 -1.48 9.65 -39.03 -0.38 -1.86 16 27 N -0.45 -7.84 10.91 -7.96 -0.09 -7.93 16 28 H 0.06 1.37 7.07 -51.93 -0.37 1.01 16 29 H 0.04 0.87 7.74 -51.93 -0.40 0.47 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.01 0.22 7.60 -51.93 -0.39 -0.18 16 32 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.34 7.46 8.13 -39.29 -0.32 7.14 16 35 H 0.08 1.38 7.61 -51.93 -0.40 0.99 16 36 H 0.04 0.78 7.94 -51.93 -0.41 0.37 16 37 H 0.22 2.36 8.06 -52.48 -0.42 1.94 16 38 H 0.14 1.71 7.83 -52.49 -0.41 1.30 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.76 6.28 -52.48 -0.33 0.43 16 41 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 42 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 43 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.14 1.55 7.90 -52.49 -0.41 1.14 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -30.63 368.61 -7.91 -38.54 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.18 Total: 5.26 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -2.02 Total: -12.00 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.08 Total: -47.53 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.16 Total: -6.10 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.63 -7.91 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602841595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.541 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds