Wall clock time and date at job start Fri Apr 10 2020 23:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47574 * 2 1 4 4 H 1.08993 * 109.47033 * 179.82108 * 3 2 1 5 5 C 1.50695 * 109.46977 * 299.82740 * 3 2 1 6 6 H 1.08000 * 119.99961 * 119.99662 * 5 3 2 7 7 C 1.37876 * 120.00240 * 300.00066 * 5 3 2 8 8 N 1.31519 * 119.99827 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00362 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47250 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47183 * 119.99549 * 9 7 5 12 12 H 1.48501 * 109.47165 * 239.99702 * 9 7 5 13 13 N 1.46907 * 109.46635 * 59.82382 * 3 2 1 14 14 C 1.46903 * 110.99485 * 85.93586 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.54348 * 14 13 3 16 16 C 1.34542 * 126.08618 * 94.71211 * 15 14 13 17 17 O 1.34766 * 107.27578 * 179.87765 * 16 15 14 18 18 C 1.34430 * 107.69122 * 0.38114 * 17 16 15 19 19 C 1.47839 * 125.72367 * 179.73599 * 18 17 16 20 20 C 1.39606 * 120.11368 * 179.75201 * 19 18 17 21 21 C 1.37979 * 119.96050 * 179.74293 * 20 19 18 22 22 C 1.38278 * 120.20437 * 0.51629 * 21 20 19 23 23 C 1.38819 * 120.24047 * 359.76454 * 22 21 20 24 24 O 1.35905 * 119.98628 * 179.97438 * 23 22 21 25 25 C 1.42898 * 116.99915 * 0.02562 * 24 23 22 26 26 C 1.38494 * 120.02873 * 359.97438 * 23 22 21 27 27 N 1.31216 * 108.54874 * 359.76353 * 18 17 16 28 28 H 1.09000 * 109.46758 * 55.58744 * 1 2 3 29 29 H 1.08996 * 109.47164 * 295.59392 * 1 2 3 30 30 H 1.08992 * 109.47287 * 175.58980 * 1 2 3 31 31 H 1.08998 * 109.46890 * 120.00138 * 2 1 3 32 32 H 1.08997 * 109.47002 * 239.99756 * 2 1 3 33 33 H 0.96995 * 120.00179 * 180.02562 * 8 7 5 34 34 H 1.00904 * 110.99378 * 209.88144 * 13 3 2 35 35 H 1.08994 * 109.46864 * 295.53513 * 14 13 3 36 36 H 1.08994 * 109.47486 * 55.54200 * 14 13 3 37 37 H 1.08006 * 126.35757 * 0.02562 * 16 15 14 38 38 H 1.07996 * 120.01755 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.89074 * 180.25655 * 21 20 19 40 40 H 1.08005 * 119.87942 * 179.74509 * 22 21 20 41 41 H 1.08997 * 109.47774 * 300.00784 * 25 24 23 42 42 H 1.09007 * 109.46705 * 60.00877 * 25 24 23 43 43 H 1.08998 * 109.47176 * 180.02562 * 25 24 23 44 44 H 1.07995 * 120.09965 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4424 0.0032 5 6 1.5414 2.1516 -1.2326 6 1 0.9202 3.0298 -1.1361 7 6 1.8779 1.6793 -2.4834 8 7 2.6347 0.6101 -2.6009 9 14 1.2603 2.5587 -4.0113 10 1 0.4341 3.7259 -3.6107 11 1 2.4179 3.0242 -4.8166 12 1 0.4373 1.6250 -4.8212 13 7 1.5470 2.1362 1.1974 14 6 2.4394 1.9094 2.3421 15 6 1.9632 2.7218 3.5187 16 6 1.1591 2.2892 4.5069 17 8 0.9796 3.3197 5.3567 18 6 1.6669 4.3702 4.8759 19 6 1.7401 5.7105 5.4956 20 6 2.4965 6.7190 4.8959 21 6 2.5584 7.9703 5.4742 22 6 1.8819 8.2262 6.6527 23 6 1.1320 7.2278 7.2594 24 8 0.4696 7.4849 8.4179 25 6 0.5888 8.8040 8.9544 26 6 1.0587 5.9699 6.6846 27 7 2.2612 4.0067 3.7640 28 1 -0.3633 0.5808 -0.8478 29 1 -0.3633 0.4439 0.9268 30 1 -0.3633 -1.0245 -0.0790 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 2.8718 0.2780 -3.4808 34 1 1.4288 3.1226 1.0208 35 1 2.4322 0.8515 2.6043 36 1 3.4528 2.2116 2.0782 37 1 0.7380 1.2993 4.6027 38 1 3.0298 6.5211 3.9779 39 1 3.1405 8.7509 5.0070 40 1 1.9373 9.2064 7.1030 41 1 1.6370 9.0182 9.1626 42 1 0.2069 9.5258 8.2323 43 1 0.0136 8.8741 9.8776 44 1 0.4760 5.1923 7.1558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602841595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:20:04 Heat of formation + Delta-G solvation = -9.772281 kcal Electronic energy + Delta-G solvation = -25136.884599 eV Core-core repulsion = 21441.426688 eV Total energy + Delta-G solvation = -3695.457910 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.33435 -41.07965 -38.50350 -38.26770 -36.15511 -34.47720 -33.32327 -32.43560 -31.53323 -30.16180 -28.48784 -28.08813 -26.13443 -24.96953 -24.77589 -23.68002 -22.11727 -21.83756 -20.91564 -19.41762 -18.44201 -17.75879 -17.70993 -17.21310 -16.94025 -16.89227 -16.64705 -16.18211 -15.86791 -15.55936 -15.27519 -14.93349 -14.71199 -14.45568 -14.18725 -13.96582 -13.82210 -13.34364 -13.15930 -13.02548 -12.83507 -12.77410 -12.68329 -12.45345 -12.36198 -12.07406 -11.93611 -11.89672 -11.72404 -11.54058 -11.28347 -10.80923 -10.64691 -10.52948 -9.53147 -9.17677 -9.04711 -8.09977 -6.21667 -0.44531 0.34785 0.77602 1.40088 1.42578 1.53425 1.61511 1.64490 2.21633 2.42761 2.72111 2.92164 3.18622 3.67162 3.76353 3.82591 3.93576 4.05662 4.13421 4.25558 4.39685 4.44811 4.45521 4.51879 4.61903 4.68587 4.76607 4.80507 4.81883 4.85078 4.89652 4.98305 5.08957 5.19749 5.32071 5.35396 5.40192 5.40569 5.57346 5.59867 5.71353 5.84159 5.90685 6.29095 6.36914 6.44135 6.65053 6.73758 6.97765 7.46473 8.95136 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.002446 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.269934 B =11444.461160 C =12275.976235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C 0.221 3.779 4 H -0.033 1.033 5 C -0.523 4.523 6 H 0.052 0.948 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.671 5.671 14 C 0.146 3.854 15 C -0.023 4.023 16 C -0.036 4.036 17 O -0.199 6.199 18 C 0.214 3.786 19 C 0.008 3.992 20 C -0.122 4.122 21 C -0.073 4.073 22 C -0.182 4.182 23 C 0.122 3.878 24 O -0.334 6.334 25 C 0.015 3.985 26 C -0.137 4.137 27 N -0.485 5.485 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.028 0.972 32 H 0.059 0.941 33 H 0.261 0.739 34 H 0.328 0.672 35 H 0.096 0.904 36 H 0.021 0.979 37 H 0.256 0.744 38 H 0.130 0.870 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.118 0.882 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.538 14.506 23.288 27.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C 0.113 3.887 4 H -0.016 1.016 5 C -0.561 4.561 6 H 0.070 0.930 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.205 1.205 13 N -0.301 5.301 14 C 0.016 3.984 15 C -0.144 4.144 16 C -0.107 4.107 17 O -0.085 6.085 18 C 0.010 3.990 19 C 0.007 3.993 20 C -0.141 4.141 21 C -0.091 4.091 22 C -0.201 4.201 23 C 0.076 3.924 24 O -0.248 6.248 25 C -0.079 4.079 26 C -0.157 4.157 27 N -0.215 5.215 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.040 0.960 37 H 0.272 0.728 38 H 0.148 0.852 39 H 0.182 0.818 40 H 0.184 0.816 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.136 0.864 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.652 14.134 23.114 27.222 hybrid contribution 0.393 0.217 -1.132 1.218 sum -2.259 14.351 21.982 26.349 Atomic orbital electron populations 1.21314 0.95961 0.98427 1.00845 1.21319 0.96289 0.97155 0.98971 1.18992 0.90912 0.92450 0.86364 1.01576 1.21428 1.31396 1.11841 0.91470 0.93015 1.25597 0.95258 0.95699 1.01613 1.70012 1.37518 1.23824 1.23998 0.85568 0.78058 0.78705 0.79669 1.19479 1.20814 1.20487 1.60795 1.48396 1.15629 1.05328 1.20143 0.93472 0.97758 0.87037 1.21785 1.01979 0.91000 0.99654 1.25553 1.01448 0.93799 0.89901 1.84496 1.57705 1.19674 1.46652 1.24024 0.93800 0.90054 0.91085 1.17070 1.00896 0.86349 0.94966 1.21228 0.99197 0.92772 1.00946 1.21224 0.97557 0.95946 0.94368 1.21775 1.00058 1.00329 0.97919 1.18807 0.93175 0.93429 0.86977 1.86071 1.67699 1.35255 1.35754 1.23425 1.03730 0.80554 1.00155 1.20396 1.02967 0.96807 0.95552 1.70465 1.23497 1.13401 1.14134 0.94858 0.92833 0.94628 0.95330 0.92270 0.92949 0.85575 0.88573 0.96050 0.72838 0.85223 0.81766 0.81631 0.91123 0.91244 0.86398 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.71 9.52 71.98 0.69 -4.02 16 2 C -0.10 -4.73 5.59 30.60 0.17 -4.56 16 3 C 0.22 11.23 2.30 44.17 0.10 11.34 16 4 H -0.03 -1.90 7.71 -2.39 -0.02 -1.92 16 5 C -0.52 -28.80 7.26 25.60 0.19 -28.62 16 6 H 0.05 2.87 7.60 -2.91 -0.02 2.85 16 7 C 0.02 0.98 5.30 84.65 0.45 1.43 16 8 N -0.91 -52.54 11.32 21.45 0.24 -52.30 16 9 Si 0.95 44.11 29.54 68.60 2.03 46.13 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 N -0.67 -29.17 5.64 -499.46 -2.82 -31.99 16 14 C 0.15 5.45 6.07 85.56 0.52 5.97 16 15 C -0.02 -0.80 6.56 41.36 0.27 -0.53 16 16 C -0.04 -1.00 12.08 66.97 0.81 -0.19 16 17 O -0.20 -5.84 10.52 -8.31 -0.09 -5.92 16 18 C 0.21 6.73 7.90 87.33 0.69 7.42 16 19 C 0.01 0.22 5.87 -20.11 -0.12 0.11 16 20 C -0.12 -2.82 9.68 22.54 0.22 -2.60 16 21 C -0.07 -1.17 10.03 22.22 0.22 -0.95 16 22 C -0.18 -2.59 9.03 22.42 0.20 -2.39 16 23 C 0.12 2.29 6.68 22.47 0.15 2.44 16 24 O -0.33 -5.63 10.49 -92.48 -0.97 -6.60 16 25 C 0.02 0.11 9.81 113.37 1.11 1.22 16 26 C -0.14 -3.17 9.65 22.63 0.22 -2.95 16 27 N -0.48 -17.32 10.91 -293.18 -3.20 -20.52 16 28 H 0.03 1.58 7.07 -2.39 -0.02 1.56 16 29 H 0.05 2.17 7.74 -2.39 -0.02 2.15 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 31 H 0.03 1.23 7.60 -2.39 -0.02 1.21 16 32 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 33 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.33 15.04 8.13 -89.69 -0.73 14.31 16 35 H 0.10 3.25 7.61 -2.39 -0.02 3.23 16 36 H 0.02 0.88 7.94 -2.39 -0.02 0.86 16 37 H 0.26 4.82 8.06 -2.91 -0.02 4.79 16 38 H 0.13 3.26 7.83 -2.91 -0.02 3.23 16 39 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.17 1.18 6.28 -2.91 -0.02 1.16 16 41 H 0.07 0.32 7.66 -2.39 -0.02 0.30 16 42 H 0.07 0.34 7.66 -2.38 -0.02 0.32 16 43 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.14 3.07 7.90 -2.91 -0.02 3.04 16 Total: -1.00 -67.94 368.61 1.38 -66.56 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.29 Total: 21.51 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 5.89 Total: -16.88 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -5.77 Total: -104.81 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -1.06 Total: -12.52 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -67.94 1.38 -66.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602841595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.790 kcal (2) G-P(sol) polarization free energy of solvation -67.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds