Wall clock time and date at job start Fri Apr 10 2020 23:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 120.00059 * 2 1 4 4 O 1.21552 * 119.99756 * 0.02562 * 3 2 1 5 5 C 1.47876 * 120.00397 * 179.97438 * 3 2 1 6 6 C 1.39671 * 119.97734 * 179.97438 * 5 3 2 7 7 C 1.37653 * 120.02393 * 180.02562 * 6 5 3 8 8 C 1.39884 * 119.97562 * 0.02562 * 7 6 5 9 9 C 1.47256 * 120.02150 * 179.97438 * 8 7 6 10 10 C 1.34741 * 119.99823 * 180.02562 * 9 8 7 11 11 C 1.46616 * 120.00162 * 180.02562 * 10 9 8 12 12 O 1.21669 * 119.99808 * 359.71699 * 11 10 9 13 13 N 1.34777 * 119.99941 * 179.72521 * 11 10 9 14 14 C 1.46499 * 120.00065 * 359.97438 * 13 11 10 15 15 C 1.46496 * 119.99614 * 180.02562 * 13 11 10 16 16 H 1.09001 * 109.47450 * 359.97438 * 15 13 11 17 17 C 1.53005 * 109.47399 * 119.99911 * 15 13 11 18 18 C 1.50701 * 109.46758 * 239.99443 * 15 13 11 19 19 H 1.07995 * 119.99918 * 0.02562 * 18 15 13 20 20 C 1.37880 * 119.99755 * 180.02562 * 18 15 13 21 21 N 1.31515 * 120.00246 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 119.99777 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47134 * 60.00127 * 22 20 18 24 24 H 1.48506 * 109.46872 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46938 * 299.99950 * 22 20 18 26 26 C 1.39882 * 119.94966 * 0.27255 * 8 7 6 27 27 C 1.37654 * 119.97394 * 359.44369 * 26 8 7 28 28 H 1.09004 * 109.47033 * 299.99639 * 1 2 3 29 29 H 1.08994 * 109.47254 * 59.99732 * 1 2 3 30 30 H 1.09008 * 109.47060 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00583 * 180.02562 * 2 1 3 32 32 H 1.07999 * 119.98978 * 0.02562 * 6 5 3 33 33 H 1.08002 * 120.00788 * 180.02562 * 7 6 5 34 34 H 1.07995 * 120.00737 * 359.97438 * 9 8 7 35 35 H 1.07997 * 119.99579 * 359.72142 * 10 9 8 36 36 H 1.08996 * 109.46832 * 90.00240 * 14 13 11 37 37 H 1.09000 * 109.47006 * 210.00693 * 14 13 11 38 38 H 1.09004 * 109.46828 * 330.00075 * 14 13 11 39 39 H 1.09004 * 109.46832 * 299.99690 * 17 15 13 40 40 H 1.08992 * 109.46876 * 59.99357 * 17 15 13 41 41 H 1.08992 * 109.47199 * 180.02562 * 17 15 13 42 42 H 0.97001 * 120.00170 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.00953 * 179.72267 * 26 8 7 44 44 H 1.07995 * 119.98514 * 180.27491 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2198 0.0005 5 6 3.6176 1.1673 0.0006 6 6 4.3154 2.3772 0.0000 7 6 5.6919 2.3784 0.0000 8 6 6.3919 1.1673 0.0000 9 6 7.8645 1.1674 -0.0005 10 6 8.5382 0.0005 -0.0011 11 6 10.0044 0.0005 -0.0011 12 8 10.6127 1.0542 -0.0058 13 7 10.6783 -1.1667 0.0040 14 6 9.9458 -2.4354 0.0101 15 6 12.1432 -1.1666 0.0046 16 1 12.5065 -0.1389 0.0000 17 6 12.6529 -1.8826 1.2570 18 6 12.6460 -1.8822 -1.2227 19 1 11.9444 -2.2952 -1.9323 20 6 14.0017 -2.0094 -1.4396 21 7 14.8560 -1.5068 -0.5752 22 14 14.6249 -2.8958 -2.9613 23 1 14.1309 -2.2000 -4.1766 24 1 16.1099 -2.8958 -2.9607 25 1 14.1293 -4.2956 -2.9564 26 6 5.6920 -0.0439 -0.0057 27 6 4.3154 -0.0427 0.0002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 3.7748 3.3121 -0.0004 33 1 6.2313 3.3141 0.0000 34 1 8.4045 2.1026 -0.0014 35 1 7.9982 -0.9348 0.0035 36 1 9.7638 -2.7547 -1.0160 37 1 10.5350 -3.1926 0.5273 38 1 8.9935 -2.3027 0.5237 39 1 12.2892 -1.3651 2.1447 40 1 12.2895 -2.9102 1.2612 41 1 13.7428 -1.8821 1.2576 42 1 15.8097 -1.5960 -0.7280 43 1 6.2314 -0.9795 -0.0103 44 1 3.7749 -0.9776 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264079539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:20:32 Heat of formation + Delta-G solvation = -46.150982 kcal Electronic energy + Delta-G solvation = -24820.673166 eV Core-core repulsion = 21123.637756 eV Total energy + Delta-G solvation = -3697.035409 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26930 -40.73149 -39.47373 -37.20011 -35.78195 -35.16785 -34.69051 -32.20433 -31.73266 -30.62105 -27.96046 -27.59771 -27.27125 -25.59132 -23.72871 -23.51241 -21.87750 -21.05439 -19.48501 -19.36164 -18.60702 -18.20123 -17.35067 -16.97524 -16.32249 -16.29295 -16.25493 -16.01623 -15.96895 -15.46163 -14.88003 -14.60408 -14.42253 -14.25712 -14.21774 -13.97963 -13.61846 -13.50434 -13.46505 -13.09706 -12.97393 -12.88166 -12.76393 -12.68428 -12.54100 -12.16853 -12.12383 -11.92632 -11.38190 -11.18429 -11.16728 -10.74123 -10.49312 -10.22212 -10.03543 -9.47855 -9.18014 -8.13603 -6.30577 -0.74681 0.37966 0.68817 1.42165 1.44787 1.52120 1.84000 2.19090 2.30565 2.46053 2.51342 2.91753 3.13911 3.48899 3.67947 3.74804 3.92504 4.11936 4.14272 4.31232 4.36395 4.47900 4.50126 4.63063 4.71668 4.73124 4.81481 4.89402 4.95648 4.96068 5.04588 5.06607 5.09972 5.15965 5.25653 5.35619 5.37720 5.48241 5.58310 5.67644 5.68571 5.80485 6.05130 6.16703 6.47319 6.77147 6.84327 7.14384 7.31861 7.48035 8.90343 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.026986 B = 0.002136 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.324838 B =13102.532507 C =13459.187973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.716 5.716 3 C 0.553 3.447 4 O -0.583 6.583 5 C -0.144 4.144 6 C -0.073 4.073 7 C -0.111 4.111 8 C -0.046 4.046 9 C -0.037 4.037 10 C -0.186 4.186 11 C 0.518 3.482 12 O -0.612 6.612 13 N -0.595 5.595 14 C 0.079 3.921 15 C 0.259 3.741 16 H 0.007 0.993 17 C -0.133 4.133 18 C -0.538 4.538 19 H 0.062 0.938 20 C 0.012 3.988 21 N -0.918 5.918 22 Si 0.966 3.034 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.260 1.260 26 C -0.110 4.110 27 C -0.073 4.073 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.419 0.581 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.170 0.830 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.020 0.980 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.264 0.736 43 H 0.160 0.840 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.377 -4.388 2.210 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.369 5.369 3 C 0.341 3.659 4 O -0.464 6.464 5 C -0.147 4.147 6 C -0.092 4.092 7 C -0.129 4.129 8 C -0.046 4.046 9 C -0.057 4.057 10 C -0.206 4.206 11 C 0.309 3.691 12 O -0.497 6.497 13 N -0.323 5.323 14 C -0.063 4.063 15 C 0.157 3.843 16 H 0.025 0.975 17 C -0.191 4.191 18 C -0.576 4.576 19 H 0.080 0.920 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.791 3.209 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.185 1.185 26 C -0.127 4.127 27 C -0.091 4.091 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.133 0.867 31 H 0.257 0.743 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.137 0.863 35 H 0.187 0.813 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.178 0.822 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -27.321 -3.200 2.250 27.599 hybrid contribution 1.261 -0.161 -0.694 1.448 sum -26.060 -3.361 1.556 26.321 Atomic orbital electron populations 1.21734 0.78188 1.04599 1.01612 1.45665 1.08666 1.08364 1.74163 1.18567 0.87687 0.84013 0.75603 1.90757 1.70788 1.32949 1.51917 1.20093 0.92298 0.95346 1.06995 1.21229 0.93784 0.98175 0.95998 1.21483 0.93769 0.98293 0.99324 1.19242 0.91560 0.94635 0.99181 1.22356 0.92427 0.98548 0.92342 1.23189 0.91053 1.00965 1.05369 1.19182 0.89685 0.83375 0.76845 1.90721 1.71850 1.32965 1.54206 1.48161 1.08070 1.06631 1.69475 1.21925 0.97049 0.84898 1.02443 1.18558 0.75452 0.95687 0.94642 0.97520 1.21880 1.02961 0.98922 0.95361 1.21539 0.92175 1.36719 1.07169 0.92030 1.25774 0.96957 0.96321 0.99671 1.70021 1.02514 1.46049 1.37096 0.85492 0.76945 0.79373 0.79090 1.20377 1.21027 1.18478 1.21675 0.94317 0.98109 0.98631 1.21501 0.94009 0.97479 0.96111 0.92983 0.93038 0.86684 0.74320 0.84991 0.83985 0.86307 0.81307 0.92311 0.91038 0.88082 0.96131 0.93045 0.91415 0.92657 0.82228 0.81445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.70 127.77 1.37 2.04 16 2 N -0.72 -7.38 5.66 -487.44 -2.76 -10.14 16 3 C 0.55 10.39 7.77 86.80 0.67 11.06 16 4 O -0.58 -15.98 16.33 -3.88 -0.06 -16.05 16 5 C -0.14 -2.45 5.88 -20.03 -0.12 -2.56 16 6 C -0.07 -1.41 9.57 22.48 0.22 -1.20 16 7 C -0.11 -2.11 9.77 22.53 0.22 -1.89 16 8 C -0.05 -0.89 5.87 -20.11 -0.12 -1.01 16 9 C -0.04 -0.93 9.46 23.84 0.23 -0.71 16 10 C -0.19 -5.10 8.61 23.66 0.20 -4.90 16 11 C 0.52 21.45 7.61 86.43 0.66 22.11 16 12 O -0.61 -31.75 15.56 -4.25 -0.07 -31.81 16 13 N -0.59 -24.89 2.75 -831.62 -2.29 -27.18 16 14 C 0.08 2.29 9.39 127.77 1.20 3.49 16 15 C 0.26 13.54 2.64 44.25 0.12 13.66 16 16 H 0.01 0.43 6.90 -2.39 -0.02 0.41 16 17 C -0.13 -6.38 8.95 71.98 0.64 -5.73 16 18 C -0.54 -29.18 8.37 25.60 0.21 -28.96 16 19 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 20 C 0.01 0.67 5.30 84.66 0.45 1.12 16 21 N -0.92 -53.10 11.32 21.45 0.24 -52.85 16 22 Si 0.97 42.86 29.54 68.60 2.03 44.89 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 C -0.11 -1.52 9.39 22.53 0.21 -1.31 16 27 C -0.07 -0.82 9.52 22.48 0.21 -0.60 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 31 H 0.42 1.32 6.85 -92.71 -0.63 0.69 16 32 H 0.13 2.64 7.63 -2.91 -0.02 2.62 16 33 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.12 3.48 7.52 -2.91 -0.02 3.46 16 35 H 0.17 3.06 4.21 -2.91 -0.01 3.05 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 2.12 6.42 -2.39 -0.02 2.11 16 38 H 0.10 1.95 6.09 -2.38 -0.01 1.93 16 39 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.05 2.20 6.66 -2.39 -0.02 2.19 16 41 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 42 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 43 H 0.16 1.42 6.15 -2.91 -0.02 1.40 16 44 H 0.17 0.44 6.38 -2.91 -0.02 0.42 16 Total: -1.00 -81.06 366.91 3.87 -77.19 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.40 Total: 11.35 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 6.38 Total: 4.60 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -4.81 Total: -90.17 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -0.13 Total: -47.86 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -81.06 3.87 -77.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264079539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.037 kcal (2) G-P(sol) polarization free energy of solvation -81.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds