Wall clock time and date at job start Fri Apr 10 2020 23:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47013 * 2 1 4 4 C 1.50699 * 109.47468 * 119.99881 * 2 1 3 5 5 H 1.08001 * 119.99869 * 119.99933 * 4 2 1 6 6 C 1.37884 * 120.00045 * 300.00840 * 4 2 1 7 7 N 1.31511 * 119.99649 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99976 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47177 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47077 * 119.99691 * 8 6 4 11 11 H 1.48499 * 109.47130 * 239.99586 * 8 6 4 12 12 N 1.46495 * 109.47307 * 240.00360 * 2 1 3 13 13 C 1.34774 * 120.00398 * 84.99978 * 12 2 1 14 14 O 1.21280 * 119.99744 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00421 * 179.97438 * 13 12 2 16 16 C 1.50696 * 109.47359 * 179.97438 * 15 13 12 17 17 C 1.38308 * 119.96744 * 270.27278 * 16 15 13 18 18 C 1.38252 * 120.14351 * 180.27547 * 17 16 15 19 19 C 1.38133 * 120.07120 * 359.45261 * 18 17 16 20 20 C 1.38852 * 119.92695 * 0.27640 * 19 18 17 21 21 N 1.39926 * 120.07205 * 179.97438 * 20 19 18 22 22 C 1.46765 * 124.35228 * 173.98713 * 21 20 19 23 23 C 1.54661 * 105.38404 * 162.84973 * 22 21 20 24 24 C 1.54633 * 101.68233 * 25.76847 * 23 22 21 25 25 C 1.34420 * 124.34595 * 354.28123 * 21 20 19 26 26 O 1.21283 * 124.94518 * 0.39473 * 25 21 20 27 27 C 1.38086 * 119.96642 * 90.00347 * 16 15 13 28 28 H 1.09001 * 109.46721 * 60.00001 * 1 2 3 29 29 H 1.08999 * 109.46887 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47303 * 300.00093 * 1 2 3 31 31 H 0.96999 * 119.99739 * 180.02562 * 7 6 4 32 32 H 0.97004 * 119.99828 * 264.99626 * 12 2 1 33 33 H 1.09006 * 109.46866 * 59.99900 * 15 13 12 34 34 H 1.08993 * 109.47275 * 300.00366 * 15 13 12 35 35 H 1.08000 * 119.92679 * 0.02562 * 17 16 15 36 36 H 1.08004 * 119.97116 * 179.73088 * 18 17 16 37 37 H 1.08001 * 120.04257 * 180.29516 * 19 18 17 38 38 H 1.08999 * 110.24469 * 281.98403 * 22 21 20 39 39 H 1.09002 * 110.24191 * 43.98077 * 22 21 20 40 40 H 1.08996 * 111.19342 * 267.59769 * 23 22 21 41 41 H 1.09000 * 110.85337 * 143.78941 * 23 22 21 42 42 H 1.09000 * 110.48813 * 216.30808 * 24 23 22 43 43 H 1.08999 * 110.48788 * 93.66237 * 24 23 22 44 44 H 1.08001 * 120.03233 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8301 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.1457 -2.2876 3.6037 10 1 3.1466 -0.1872 4.8165 11 1 1.1662 -1.5867 4.8160 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8582 1.1585 -2.4116 15 6 2.6501 -0.7283 -3.5874 16 6 2.7001 0.2398 -4.7412 17 6 1.5959 0.3976 -5.5590 18 6 1.6398 1.2806 -6.6219 19 6 2.7834 2.0167 -6.8635 20 6 3.8916 1.8648 -6.0410 21 7 5.0518 2.6086 -6.2832 22 6 6.2280 2.6179 -5.4054 23 6 7.3773 3.1936 -6.2654 24 6 6.6009 4.0486 -7.2937 25 6 5.2301 3.4107 -7.3471 26 8 4.4114 3.5958 -8.2225 27 6 3.8463 0.9727 -4.9774 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7093 1.1616 3.4844 32 1 2.2491 -1.6317 -1.1526 33 1 1.9778 -1.5507 -3.8325 34 1 3.6493 -1.1201 -3.3978 35 1 0.6990 -0.1733 -5.3694 36 1 0.7774 1.3983 -7.2615 37 1 2.8154 2.7098 -7.6911 38 1 6.0467 3.2536 -4.5387 39 1 6.4686 1.6037 -5.0865 40 1 7.9350 2.3989 -6.7608 41 1 8.0395 3.8148 -5.6624 42 1 7.0821 4.0008 -8.2705 43 1 6.5279 5.0816 -6.9535 44 1 4.7068 0.8520 -4.3360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278718831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:20:58 Heat of formation + Delta-G solvation = -69.086695 kcal Electronic energy + Delta-G solvation = -25678.278390 eV Core-core repulsion = 21980.248413 eV Total energy + Delta-G solvation = -3698.029976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.09255 -40.75199 -39.44306 -37.69536 -36.68266 -34.54244 -34.26922 -33.22055 -31.09419 -30.20839 -28.78273 -28.12234 -27.31819 -24.27304 -23.90703 -22.79381 -22.06536 -21.17758 -20.40202 -18.95507 -18.35852 -17.78495 -17.46730 -17.32714 -17.10459 -16.68303 -16.05434 -15.99183 -15.41508 -15.24469 -14.83446 -14.77146 -14.64200 -14.46299 -14.38016 -13.99248 -13.72820 -13.61945 -13.33672 -13.07883 -12.96649 -12.79062 -12.66797 -12.60888 -12.35268 -12.26718 -12.10040 -12.05530 -12.00637 -11.16471 -11.07591 -10.74669 -10.72174 -10.57117 -9.76856 -9.70202 -8.92336 -8.16504 -6.34060 0.24873 0.36269 1.45281 1.46266 1.49893 1.58394 1.78487 1.89622 2.37034 2.60866 2.99168 3.14268 3.24903 3.50693 3.69825 3.90890 3.95927 4.06523 4.17010 4.21938 4.37820 4.41965 4.49276 4.56380 4.58606 4.66583 4.75861 4.76649 4.80347 4.92982 5.00110 5.04734 5.11865 5.14753 5.20798 5.42860 5.46193 5.52970 5.63696 5.64521 5.71744 5.93440 6.06094 6.07455 6.11976 6.75288 6.92668 7.03076 7.34509 7.63649 8.89987 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018837 B = 0.002727 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.070851 B =10265.356259 C =11158.244464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H -0.005 1.005 4 C -0.544 4.544 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.973 3.027 9 H -0.257 1.257 10 H -0.284 1.284 11 H -0.281 1.281 12 N -0.706 5.706 13 C 0.499 3.501 14 O -0.597 6.597 15 C -0.091 4.091 16 C -0.043 4.043 17 C -0.140 4.140 18 C -0.097 4.097 19 C -0.181 4.181 20 C 0.147 3.853 21 N -0.563 5.563 22 C 0.080 3.920 23 C -0.114 4.114 24 C -0.144 4.144 25 C 0.497 3.503 26 O -0.560 6.560 27 C -0.148 4.148 28 H 0.009 0.991 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.264 0.736 32 H 0.407 0.593 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.868 -1.816 -17.757 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.013 0.987 4 C -0.582 4.582 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.181 1.181 10 H -0.211 1.211 11 H -0.206 1.206 12 N -0.356 5.356 13 C 0.287 3.713 14 O -0.479 6.479 15 C -0.130 4.130 16 C -0.044 4.044 17 C -0.159 4.159 18 C -0.115 4.115 19 C -0.201 4.201 20 C 0.054 3.946 21 N -0.286 5.286 22 C -0.041 4.041 23 C -0.151 4.151 24 C -0.184 4.184 25 C 0.289 3.711 26 O -0.439 6.439 27 C -0.168 4.168 28 H 0.029 0.971 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.242 0.758 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.194 -0.776 -18.089 22.403 hybrid contribution -0.355 -0.280 1.057 1.149 sum 12.839 -1.057 -17.032 21.356 Atomic orbital electron populations 1.21903 0.98609 0.99434 0.99364 1.18288 0.90905 0.91842 0.82205 0.98695 1.21603 1.32370 1.13496 0.90716 0.90584 1.25836 0.94925 0.95594 1.02464 1.70073 1.37186 1.24082 1.24481 0.85282 0.78048 0.78561 0.78344 1.18074 1.21055 1.20645 1.46266 1.65397 1.14310 1.09599 1.21219 0.77575 0.87105 0.85427 1.90671 1.52740 1.18593 1.85868 1.20730 1.05987 0.97726 0.88584 1.19331 0.93434 0.96695 0.94924 1.21228 0.98418 1.00447 0.95771 1.21215 0.97641 0.95124 0.97535 1.21608 0.93145 1.03198 1.02179 1.17894 0.86610 0.93721 0.96414 1.46090 1.15372 1.42450 1.24641 1.22672 0.83409 1.04362 0.93639 1.22704 0.95752 1.00316 0.96376 1.22427 0.90103 1.01686 1.04160 1.22119 0.91153 0.78166 0.79652 1.90588 1.50732 1.63599 1.39020 1.20754 1.00004 0.97952 0.98110 0.97144 0.93956 0.91746 0.92650 0.75769 0.85084 0.85217 0.84709 0.83926 0.84409 0.89942 0.88265 0.88144 0.85773 0.85973 0.85910 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.27 13.92 2.56 44.25 0.11 14.03 16 3 H 0.00 -0.30 7.58 -2.38 -0.02 -0.32 16 4 C -0.54 -28.24 8.73 25.60 0.22 -28.01 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -52.75 11.32 21.45 0.24 -52.51 16 8 Si 0.97 41.32 29.54 68.60 2.03 43.35 16 9 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 12 N -0.71 -27.99 5.07 -446.10 -2.26 -30.25 16 13 C 0.50 19.01 7.79 87.66 0.68 19.69 16 14 O -0.60 -29.22 15.70 -3.03 -0.05 -29.27 16 15 C -0.09 -2.27 5.83 29.10 0.17 -2.11 16 16 C -0.04 -1.21 4.37 -19.89 -0.09 -1.30 16 17 C -0.14 -3.93 9.70 22.29 0.22 -3.71 16 18 C -0.10 -2.72 10.04 22.25 0.22 -2.50 16 19 C -0.18 -5.63 9.29 22.39 0.21 -5.42 16 20 C 0.15 4.30 6.60 38.15 0.25 4.55 16 21 N -0.56 -13.26 3.14 -627.34 -1.97 -15.23 16 22 C 0.08 1.14 6.52 86.89 0.57 1.71 16 23 C -0.11 -0.79 7.19 31.72 0.23 -0.56 16 24 C -0.14 -1.67 6.86 30.59 0.21 -1.46 16 25 C 0.50 11.84 7.92 87.90 0.70 12.54 16 26 O -0.56 -17.89 14.81 -3.04 -0.05 -17.94 16 27 C -0.15 -4.10 9.07 22.39 0.20 -3.90 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 3.61 6.07 -2.39 -0.01 3.59 16 31 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.41 13.03 8.54 -92.71 -0.79 12.24 16 33 H 0.13 2.48 8.09 -2.38 -0.02 2.46 16 34 H 0.13 2.43 8.08 -2.39 -0.02 2.41 16 35 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 36 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.14 4.60 5.25 -2.91 -0.02 4.59 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 1.18 7.23 -2.39 -0.02 1.16 16 40 H 0.10 0.45 8.14 -2.39 -0.02 0.44 16 41 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.14 3.24 6.74 -2.91 -0.02 3.22 16 Total: -1.00 -79.07 364.65 3.20 -75.87 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.23 Total: 27.53 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 5.02 Total: -1.55 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -3.99 Total: -97.99 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -0.09 Total: -47.21 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -79.07 3.20 -75.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278718831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.786 kcal (2) G-P(sol) polarization free energy of solvation -79.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds