Wall clock time and date at job start Fri Apr 10 2020 23:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47125 * 2 1 4 4 N 1.46890 * 109.47561 * 120.00923 * 2 1 3 5 5 C 1.46903 * 111.00484 * 200.28947 * 4 2 1 6 6 H 1.09005 * 109.46543 * 329.69938 * 5 4 2 7 7 C 1.52994 * 109.47226 * 89.69527 * 5 4 2 8 8 C 1.50699 * 109.47272 * 209.69752 * 5 4 2 9 9 C 1.38292 * 119.93077 * 319.72367 * 8 5 4 10 10 C 1.38102 * 120.06997 * 179.72551 * 9 8 5 11 11 C 1.38881 * 119.92738 * 0.54625 * 10 9 8 12 12 O 1.35752 * 120.06944 * 179.74936 * 11 10 9 13 13 C 1.34821 * 116.99990 * 185.75392 * 12 11 10 14 14 H 1.08000 * 120.00533 * 5.45038 * 13 12 11 15 15 C 1.38661 * 120.00174 * 185.45979 * 13 12 11 16 16 N 1.31560 * 119.99642 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 120.00260 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47180 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46825 * 119.99886 * 17 15 13 20 20 H 1.48496 * 109.47395 * 239.99784 * 17 15 13 21 21 C 1.38878 * 119.86393 * 359.72666 * 11 10 9 22 22 C 1.38107 * 119.92998 * 359.97438 * 21 11 10 23 23 C 1.50704 * 109.46856 * 240.01227 * 2 1 3 24 24 N 1.30839 * 125.95550 * 285.02387 * 23 2 1 25 25 C 1.33237 * 109.82709 * 180.02562 * 24 23 2 26 26 N 1.30717 * 108.94812 * 359.97438 * 25 24 23 27 27 N 1.34421 * 125.96390 * 104.71433 * 23 2 1 28 28 C 1.46495 * 126.82701 * 0.02562 * 27 23 2 29 29 H 1.08999 * 109.47412 * 64.98647 * 1 2 3 30 30 H 1.08990 * 109.47226 * 184.98927 * 1 2 3 31 31 H 1.09007 * 109.46915 * 304.98592 * 1 2 3 32 32 H 1.00902 * 110.99683 * 324.24022 * 4 2 1 33 33 H 1.09002 * 109.47183 * 175.01488 * 7 5 4 34 34 H 1.09002 * 109.47443 * 295.00599 * 7 5 4 35 35 H 1.08996 * 109.47336 * 55.00609 * 7 5 4 36 36 H 1.08004 * 119.96792 * 359.97438 * 9 8 5 37 37 H 1.07997 * 120.03822 * 180.27434 * 10 9 8 38 38 H 0.97000 * 119.99945 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.03542 * 179.97438 * 21 11 10 40 40 H 1.07999 * 119.96722 * 180.02562 * 22 21 11 41 41 H 1.08004 * 125.52864 * 180.02562 * 25 24 23 42 42 H 1.09004 * 109.47140 * 89.99881 * 28 27 23 43 43 H 1.08996 * 109.47587 * 210.00233 * 28 27 23 44 44 H 1.09001 * 109.47201 * 330.00077 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1992 5 6 3.4080 -0.3146 1.4956 6 1 3.9259 -0.0765 0.5664 7 6 3.4185 0.9094 2.4134 8 6 4.1058 -1.4617 2.1799 9 6 3.4363 -2.2066 3.1335 10 6 4.0711 -3.2619 3.7584 11 6 5.3871 -3.5676 3.4364 12 8 6.0155 -4.6012 4.0526 13 6 7.3256 -4.7696 3.7823 14 1 7.8485 -4.0475 3.1727 15 6 8.0018 -5.8700 4.2869 16 7 7.3650 -6.7495 5.0298 17 14 9.8167 -6.1037 3.9119 18 1 10.2949 -4.9835 3.0625 19 1 10.5858 -6.1245 5.1821 20 1 10.0123 -7.3887 3.1938 21 6 6.0586 -2.8141 2.4825 22 6 5.4162 -1.7639 1.8567 23 6 2.0323 -0.7102 -1.2307 24 7 2.0295 -2.0039 -1.4260 25 6 2.5470 -2.2815 -2.6220 26 7 2.8874 -1.1632 -3.2071 27 7 2.5559 -0.1247 -2.3215 28 6 2.7471 1.3110 -2.5412 29 1 -0.3634 0.4345 -0.9313 30 1 -0.3633 -1.0237 0.0894 31 1 -0.3633 0.5893 0.8420 32 1 1.4196 -0.5139 1.9904 33 1 4.4440 1.1363 2.7047 34 1 2.9935 1.7631 1.8855 35 1 2.8254 0.7010 3.3038 36 1 2.4145 -1.9653 3.3870 37 1 3.5463 -3.8461 4.4998 38 1 7.8380 -7.5191 5.3831 39 1 7.0820 -3.0492 2.2303 40 1 5.9376 -1.1778 1.1144 41 1 2.6654 -3.2701 -3.0405 42 1 3.7317 1.6062 -2.1785 43 1 2.6720 1.5287 -3.6066 44 1 1.9797 1.8664 -2.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788984212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:21:14 Heat of formation + Delta-G solvation = 94.457969 kcal Electronic energy + Delta-G solvation = -26041.354667 eV Core-core repulsion = 22382.709270 eV Total energy + Delta-G solvation = -3658.645397 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.12778 -39.16503 -37.84443 -36.07527 -34.17434 -33.13510 -32.10268 -30.52012 -30.08032 -28.45026 -27.78606 -27.46459 -25.33436 -23.95717 -22.69245 -21.99454 -21.80711 -20.07359 -19.83998 -17.85710 -17.28254 -16.91577 -16.32486 -15.56070 -15.37669 -15.21690 -14.47680 -14.44993 -14.26976 -13.91949 -13.55909 -13.47713 -13.42436 -13.30467 -13.09041 -12.78930 -12.64559 -12.62176 -12.39545 -12.04125 -11.81123 -11.65666 -11.60874 -11.37534 -11.15262 -10.62201 -10.56253 -10.43671 -10.35010 -9.87842 -9.73581 -9.56065 -9.27358 -8.76362 -8.50186 -8.05256 -7.05983 -6.38608 -3.96935 1.54541 2.18190 2.33437 2.42655 3.01901 3.15983 3.17501 3.22933 3.91565 3.96271 4.02139 4.33429 4.56350 4.64629 4.73021 4.79484 4.88232 5.02175 5.05418 5.15087 5.22761 5.25671 5.32929 5.39139 5.39786 5.42528 5.66495 5.78011 5.80719 5.89825 6.00498 6.09512 6.24890 6.32068 6.43856 6.50164 6.68300 6.80346 6.85040 7.03302 7.15914 7.30322 7.37168 7.50369 7.53746 7.93220 8.06994 8.17496 9.07493 9.79739 10.79874 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017416 B = 0.003042 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.349509 B = 9201.666928 C = 9859.026085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.167 3.833 3 H 0.059 0.941 4 N -0.657 5.657 5 C 0.143 3.857 6 H 0.066 0.934 7 C -0.175 4.175 8 C -0.162 4.162 9 C -0.048 4.048 10 C -0.194 4.194 11 C 0.154 3.846 12 O -0.181 6.181 13 C -0.389 4.389 14 H 0.090 0.910 15 C 0.038 3.962 16 N -0.864 5.864 17 Si 0.939 3.061 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.232 4.232 22 C -0.068 4.068 23 C 0.287 3.713 24 N -0.503 5.503 25 C 0.197 3.803 26 N -0.328 5.328 27 N -0.388 5.388 28 C 0.095 3.905 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.351 0.649 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.268 0.732 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.215 0.785 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.921 18.517 -11.200 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.054 3.946 3 H 0.077 0.923 4 N -0.290 5.290 5 C 0.034 3.966 6 H 0.084 0.916 7 C -0.234 4.234 8 C -0.163 4.163 9 C -0.066 4.066 10 C -0.213 4.213 11 C 0.101 3.899 12 O -0.084 6.084 13 C -0.466 4.466 14 H 0.108 0.892 15 C -0.166 4.166 16 N -0.499 5.499 17 Si 0.764 3.236 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.251 4.251 22 C -0.087 4.087 23 C 0.010 3.990 24 N -0.229 5.229 25 C -0.106 4.106 26 N -0.156 5.156 27 N -0.180 5.180 28 C -0.047 4.047 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.172 0.828 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.142 0.858 40 H 0.116 0.884 41 H 0.232 0.768 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.551 17.434 -11.764 23.995 hybrid contribution 1.047 0.863 0.004 1.357 sum -10.504 18.297 -11.760 24.153 Atomic orbital electron populations 1.21905 0.92121 1.04382 1.02244 1.19803 0.95520 0.93071 0.86189 0.92347 1.60255 1.03087 1.60588 1.05092 1.20206 0.87859 0.91956 0.96553 0.91608 1.22509 1.03153 0.97519 1.00244 1.18939 0.94473 1.00721 1.02208 1.20268 0.97678 0.93960 0.94739 1.20198 0.93781 1.01596 1.05714 1.19389 0.91846 0.88257 0.90420 1.83991 1.24229 1.41286 1.58914 1.21341 0.81815 1.09356 1.34053 0.89213 1.25269 1.00279 0.94718 0.96311 1.70051 1.36603 1.11675 1.31595 0.85672 0.80762 0.78707 0.78431 1.19185 1.20200 1.20170 1.21078 1.01701 1.00053 1.02312 1.20484 0.93913 0.96314 0.97981 1.24291 0.94846 0.89489 0.90405 1.70558 1.23250 1.12218 1.16895 1.26060 0.96078 0.98314 0.90102 1.78023 1.25345 0.95754 1.16459 1.50303 1.47110 1.07509 1.13077 1.21896 1.03069 0.75282 1.04492 0.92047 0.90065 0.91223 0.82797 0.91566 0.93524 0.91945 0.87259 0.86712 0.92169 0.85831 0.88371 0.76831 0.90422 0.89004 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.21 37.16 0.34 -0.74 16 2 C 0.17 1.57 2.74 -68.87 -0.19 1.39 16 3 H 0.06 0.42 6.55 -51.93 -0.34 0.08 16 4 N -0.66 -7.51 5.42 -102.17 -0.55 -8.06 16 5 C 0.14 1.84 2.58 -68.87 -0.18 1.66 16 6 H 0.07 0.90 7.27 -51.93 -0.38 0.52 16 7 C -0.18 -1.78 9.17 37.15 0.34 -1.44 16 8 C -0.16 -2.79 4.96 -104.58 -0.52 -3.30 16 9 C -0.05 -0.87 9.31 -39.61 -0.37 -1.23 16 10 C -0.19 -4.21 9.99 -39.39 -0.39 -4.61 16 11 C 0.15 3.85 6.65 -39.11 -0.26 3.59 16 12 O -0.18 -5.30 9.76 0.07 0.00 -5.30 16 13 C -0.39 -11.18 9.44 30.89 0.29 -10.89 16 14 H 0.09 2.41 5.30 -52.49 -0.28 2.13 16 15 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 16 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 17 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 C -0.23 -5.27 9.13 -39.39 -0.36 -5.63 16 22 C -0.07 -1.31 9.66 -39.61 -0.38 -1.70 16 23 C 0.29 3.60 6.25 -155.69 -0.97 2.63 16 24 N -0.50 -7.69 11.18 -11.97 -0.13 -7.82 16 25 C 0.20 2.75 13.03 -91.81 -1.20 1.55 16 26 N -0.33 -4.54 12.70 29.29 0.37 -4.17 16 27 N -0.39 -4.51 4.04 -65.10 -0.26 -4.77 16 28 C 0.10 0.63 11.11 59.84 0.67 1.29 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.35 3.32 7.61 -39.29 -0.30 3.02 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.36 7.79 -51.93 -0.40 -0.04 16 35 H 0.06 0.61 8.03 -51.93 -0.42 0.19 16 36 H 0.11 1.65 7.40 -52.48 -0.39 1.26 16 37 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.12 2.84 5.71 -52.49 -0.30 2.54 16 40 H 0.10 1.68 8.03 -52.49 -0.42 1.26 16 41 H 0.22 2.29 8.06 -52.48 -0.42 1.87 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.34 7.39 -51.93 -0.38 -0.04 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -35.60 370.73 -8.66 -44.26 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.13 Total: 5.82 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -3.28 Total: -16.45 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.18 Total: -49.94 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: 0.00 Total: -5.30 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.60 -8.66 -44.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788984212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.720 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds