Wall clock time and date at job start Fri Apr 10 2020 23:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47125 * 2 1 4 4 N 1.46890 * 109.47561 * 120.00923 * 2 1 3 5 5 C 1.46903 * 111.00484 * 200.28947 * 4 2 1 6 6 H 1.09005 * 109.46543 * 329.69938 * 5 4 2 7 7 C 1.52994 * 109.47226 * 89.69527 * 5 4 2 8 8 C 1.50699 * 109.47272 * 209.69752 * 5 4 2 9 9 C 1.38292 * 119.93077 * 319.72367 * 8 5 4 10 10 C 1.38102 * 120.06997 * 179.72551 * 9 8 5 11 11 C 1.38881 * 119.92738 * 0.54625 * 10 9 8 12 12 O 1.35752 * 120.06944 * 179.74936 * 11 10 9 13 13 C 1.34821 * 116.99990 * 185.75392 * 12 11 10 14 14 H 1.08000 * 120.00533 * 5.45038 * 13 12 11 15 15 C 1.38661 * 120.00174 * 185.45979 * 13 12 11 16 16 N 1.31560 * 119.99642 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 120.00260 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47180 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46825 * 119.99886 * 17 15 13 20 20 H 1.48496 * 109.47395 * 239.99784 * 17 15 13 21 21 C 1.38878 * 119.86393 * 359.72666 * 11 10 9 22 22 C 1.38107 * 119.92998 * 359.97438 * 21 11 10 23 23 C 1.50704 * 109.46856 * 240.01227 * 2 1 3 24 24 N 1.30839 * 125.95550 * 285.02387 * 23 2 1 25 25 C 1.33237 * 109.82709 * 180.02562 * 24 23 2 26 26 N 1.30717 * 108.94812 * 359.97438 * 25 24 23 27 27 N 1.34421 * 125.96390 * 104.71433 * 23 2 1 28 28 C 1.46495 * 126.82701 * 0.02562 * 27 23 2 29 29 H 1.08999 * 109.47412 * 64.98647 * 1 2 3 30 30 H 1.08990 * 109.47226 * 184.98927 * 1 2 3 31 31 H 1.09007 * 109.46915 * 304.98592 * 1 2 3 32 32 H 1.00902 * 110.99683 * 324.24022 * 4 2 1 33 33 H 1.09002 * 109.47183 * 175.01488 * 7 5 4 34 34 H 1.09002 * 109.47443 * 295.00599 * 7 5 4 35 35 H 1.08996 * 109.47336 * 55.00609 * 7 5 4 36 36 H 1.08004 * 119.96792 * 359.97438 * 9 8 5 37 37 H 1.07997 * 120.03822 * 180.27434 * 10 9 8 38 38 H 0.97000 * 119.99945 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.03542 * 179.97438 * 21 11 10 40 40 H 1.07999 * 119.96722 * 180.02562 * 22 21 11 41 41 H 1.08004 * 125.52864 * 180.02562 * 25 24 23 42 42 H 1.09004 * 109.47140 * 89.99881 * 28 27 23 43 43 H 1.08996 * 109.47587 * 210.00233 * 28 27 23 44 44 H 1.09001 * 109.47201 * 330.00077 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1992 5 6 3.4080 -0.3146 1.4956 6 1 3.9259 -0.0765 0.5664 7 6 3.4185 0.9094 2.4134 8 6 4.1058 -1.4617 2.1799 9 6 3.4363 -2.2066 3.1335 10 6 4.0711 -3.2619 3.7584 11 6 5.3871 -3.5676 3.4364 12 8 6.0155 -4.6012 4.0526 13 6 7.3256 -4.7696 3.7823 14 1 7.8485 -4.0475 3.1727 15 6 8.0018 -5.8700 4.2869 16 7 7.3650 -6.7495 5.0298 17 14 9.8167 -6.1037 3.9119 18 1 10.2949 -4.9835 3.0625 19 1 10.5858 -6.1245 5.1821 20 1 10.0123 -7.3887 3.1938 21 6 6.0586 -2.8141 2.4825 22 6 5.4162 -1.7639 1.8567 23 6 2.0323 -0.7102 -1.2307 24 7 2.0295 -2.0039 -1.4260 25 6 2.5470 -2.2815 -2.6220 26 7 2.8874 -1.1632 -3.2071 27 7 2.5559 -0.1247 -2.3215 28 6 2.7471 1.3110 -2.5412 29 1 -0.3634 0.4345 -0.9313 30 1 -0.3633 -1.0237 0.0894 31 1 -0.3633 0.5893 0.8420 32 1 1.4196 -0.5139 1.9904 33 1 4.4440 1.1363 2.7047 34 1 2.9935 1.7631 1.8855 35 1 2.8254 0.7010 3.3038 36 1 2.4145 -1.9653 3.3870 37 1 3.5463 -3.8461 4.4998 38 1 7.8380 -7.5191 5.3831 39 1 7.0820 -3.0492 2.2303 40 1 5.9376 -1.1778 1.1144 41 1 2.6654 -3.2701 -3.0405 42 1 3.7317 1.6062 -2.1785 43 1 2.6720 1.5287 -3.6066 44 1 1.9797 1.8664 -2.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788984212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:21:13 Heat of formation + Delta-G solvation = 70.582384 kcal Electronic energy + Delta-G solvation = -26042.389990 eV Core-core repulsion = 22382.709270 eV Total energy + Delta-G solvation = -3659.680720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.03469 -40.82481 -39.19609 -37.49004 -35.00307 -34.44758 -33.84323 -31.81037 -31.42691 -29.73590 -28.75903 -28.12990 -27.34683 -24.73652 -24.05647 -23.46556 -22.88668 -21.50558 -20.74219 -19.73155 -18.81922 -18.06687 -17.24604 -16.66536 -16.58034 -16.20538 -16.08643 -15.82901 -15.51902 -15.38243 -15.10775 -14.79085 -14.35435 -14.19606 -14.05561 -13.99639 -13.87539 -13.52718 -13.50269 -13.30983 -13.12746 -12.86951 -12.53740 -12.47409 -12.40368 -12.21778 -12.12429 -12.05316 -11.72923 -11.17301 -10.86669 -10.78006 -10.63671 -10.46348 -9.72250 -9.35475 -8.82746 -8.46659 -6.14243 0.63743 0.65584 0.77312 1.33205 1.42078 1.45668 1.51672 2.04188 2.17547 2.82171 3.07681 3.19443 3.25519 3.55825 3.69294 3.83587 4.01749 4.05996 4.14420 4.16102 4.22486 4.34704 4.36957 4.39941 4.55771 4.63026 4.63827 4.73577 4.77022 4.90351 4.94734 4.97817 5.14022 5.17631 5.29228 5.32787 5.35405 5.38864 5.49414 5.63034 5.74990 5.78977 5.91139 6.04542 6.14415 6.29257 6.56341 6.98312 7.24211 7.81305 8.77257 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017416 B = 0.003042 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.349509 B = 9201.666928 C = 9859.026085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.170 3.830 3 H 0.094 0.906 4 N -0.675 5.675 5 C 0.151 3.849 6 H 0.063 0.937 7 C -0.169 4.169 8 C -0.136 4.136 9 C -0.040 4.040 10 C -0.205 4.205 11 C 0.110 3.890 12 O -0.235 6.235 13 C -0.412 4.412 14 H 0.097 0.903 15 C -0.024 4.024 16 N -0.921 5.921 17 Si 1.018 2.982 18 H -0.254 1.254 19 H -0.265 1.265 20 H -0.268 1.268 21 C -0.243 4.243 22 C -0.075 4.075 23 C 0.282 3.718 24 N -0.548 5.548 25 C 0.181 3.819 26 N -0.351 5.351 27 N -0.386 5.386 28 C 0.082 3.918 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.365 0.635 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.149 0.851 37 H 0.112 0.888 38 H 0.272 0.728 39 H 0.111 0.889 40 H 0.124 0.876 41 H 0.228 0.772 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 22.561 -12.410 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.057 3.943 3 H 0.112 0.888 4 N -0.310 5.310 5 C 0.041 3.959 6 H 0.082 0.918 7 C -0.228 4.228 8 C -0.137 4.137 9 C -0.058 4.058 10 C -0.224 4.224 11 C 0.060 3.940 12 O -0.142 6.142 13 C -0.488 4.488 14 H 0.114 0.886 15 C -0.221 4.221 16 N -0.560 5.560 17 Si 0.837 3.163 18 H -0.178 1.178 19 H -0.190 1.190 20 H -0.193 1.193 21 C -0.262 4.262 22 C -0.093 4.093 23 C 0.004 3.996 24 N -0.275 5.275 25 C -0.122 4.122 26 N -0.180 5.180 27 N -0.177 5.177 28 C -0.059 4.059 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.188 0.812 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.166 0.834 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.245 0.755 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.760 21.558 -12.997 28.222 hybrid contribution 1.136 -0.105 0.228 1.164 sum -11.624 21.452 -12.770 27.539 Atomic orbital electron populations 1.21883 0.90459 1.03609 1.04076 1.20054 0.96671 0.93835 0.83693 0.88843 1.59999 1.02515 1.62009 1.06473 1.20101 0.88411 0.90833 0.96539 0.91825 1.22434 1.03085 0.97057 1.00179 1.19613 0.93570 1.00512 0.99994 1.20676 0.99134 0.92204 0.93765 1.20500 0.92900 1.02830 1.06158 1.19918 0.93358 0.88601 0.92111 1.83943 1.24758 1.43889 1.61605 1.21795 0.82416 1.10103 1.34493 0.88615 1.26572 1.05706 0.93975 0.95838 1.70192 1.39068 1.12832 1.33864 0.84544 0.73876 0.79077 0.78774 1.17759 1.19026 1.19318 1.21140 1.01413 1.01158 1.02533 1.20810 0.95048 0.95444 0.98032 1.24896 0.94163 0.89107 0.91396 1.70506 1.24838 1.14333 1.17862 1.26423 0.96341 0.99206 0.90199 1.77931 1.25981 0.96365 1.17694 1.50576 1.46042 1.08728 1.12382 1.22355 1.04918 0.72752 1.05837 0.91053 0.92405 0.88300 0.81173 0.92591 0.89943 0.91236 0.83383 0.87030 0.91858 0.87138 0.85857 0.75549 0.89408 0.88288 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.21 71.98 0.66 -0.80 16 2 C 0.17 2.42 2.74 44.17 0.12 2.54 16 3 H 0.09 0.73 6.55 -2.39 -0.02 0.71 16 4 N -0.67 -12.49 5.42 -477.17 -2.59 -15.07 16 5 C 0.15 3.21 2.58 44.17 0.11 3.32 16 6 H 0.06 1.45 7.27 -2.38 -0.02 1.43 16 7 C -0.17 -2.51 9.17 71.98 0.66 -1.85 16 8 C -0.14 -4.33 4.96 -19.84 -0.10 -4.43 16 9 C -0.04 -1.36 9.31 22.25 0.21 -1.15 16 10 C -0.20 -9.11 9.99 22.39 0.22 -8.89 16 11 C 0.11 5.78 6.65 22.58 0.15 5.93 16 12 O -0.23 -14.80 9.76 -22.67 -0.22 -15.03 16 13 C -0.41 -25.09 9.44 67.92 0.64 -24.45 16 14 H 0.10 5.44 5.30 -2.91 -0.02 5.42 16 15 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 16 N -0.92 -58.25 13.67 21.62 0.30 -57.96 16 17 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 18 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 C -0.24 -11.41 9.13 22.39 0.20 -11.20 16 22 C -0.07 -2.80 9.66 22.25 0.21 -2.59 16 23 C 0.28 6.29 6.25 138.23 0.86 7.16 16 24 N -0.55 -16.17 11.18 -191.77 -2.14 -18.31 16 25 C 0.18 4.99 13.03 180.76 2.36 7.35 16 26 N -0.35 -9.35 12.70 -61.24 -0.78 -10.13 16 27 N -0.39 -7.92 4.04 -359.88 -1.45 -9.38 16 28 C 0.08 0.76 11.11 127.77 1.42 2.18 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.36 5.01 7.61 -89.69 -0.68 4.33 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.71 7.79 -2.39 -0.02 0.69 16 35 H 0.07 0.98 8.03 -2.39 -0.02 0.96 16 36 H 0.15 3.92 7.40 -2.91 -0.02 3.89 16 37 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 38 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 39 H 0.11 5.35 5.71 -2.91 -0.02 5.33 16 40 H 0.12 3.97 8.03 -2.91 -0.02 3.94 16 41 H 0.23 5.00 8.06 -2.91 -0.02 4.98 16 42 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.12 0.28 7.39 -2.39 -0.02 0.26 16 Total: -1.00 -85.25 370.73 3.69 -81.56 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.34 Total: 25.55 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 8.21 Total: -27.82 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -6.66 Total: -110.85 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.22 Total: -15.03 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -85.25 3.69 -81.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788984212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.141 kcal (2) G-P(sol) polarization free energy of solvation -85.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds