Wall clock time and date at job start Fri Apr 10 2020 23:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47209 * 2 1 4 4 N 1.46902 * 109.46923 * 239.99650 * 2 1 3 5 5 C 1.46894 * 110.99868 * 85.00251 * 4 2 1 6 6 H 1.08997 * 109.47452 * 324.99745 * 5 4 2 7 7 C 1.52997 * 109.47240 * 84.99854 * 5 4 2 8 8 C 1.50706 * 109.47347 * 204.99948 * 5 4 2 9 9 C 1.38304 * 119.92604 * 319.72822 * 8 5 4 10 10 C 1.38106 * 120.06352 * 179.72167 * 9 8 5 11 11 C 1.38873 * 119.93124 * 0.55111 * 10 9 8 12 12 O 1.35748 * 120.07094 * 179.74980 * 11 10 9 13 13 C 1.34823 * 117.00249 * 174.44108 * 12 11 10 14 14 H 1.08005 * 120.00376 * 5.04942 * 13 12 11 15 15 C 1.38660 * 120.00331 * 185.05344 * 13 12 11 16 16 N 1.31551 * 120.00539 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99563 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47020 * 90.00106 * 17 15 13 19 19 H 1.48497 * 109.46827 * 210.00353 * 17 15 13 20 20 H 1.48502 * 109.46995 * 329.99979 * 17 15 13 21 21 C 1.38887 * 119.86514 * 359.72166 * 11 10 9 22 22 C 1.38106 * 119.92492 * 0.02562 * 21 11 10 23 23 C 1.50696 * 109.47046 * 120.00150 * 2 1 3 24 24 N 1.30831 * 125.96572 * 75.02268 * 23 2 1 25 25 C 1.33244 * 109.82928 * 180.02562 * 24 23 2 26 26 N 1.30704 * 108.94696 * 359.97438 * 25 24 23 27 27 N 1.34430 * 125.96259 * 254.71621 * 23 2 1 28 28 C 1.46504 * 126.81805 * 359.97438 * 27 23 2 29 29 H 1.08996 * 109.46577 * 299.99950 * 1 2 3 30 30 H 1.08995 * 109.46621 * 60.00097 * 1 2 3 31 31 H 1.09003 * 109.47008 * 180.02562 * 1 2 3 32 32 H 1.00902 * 110.99864 * 208.95500 * 4 2 1 33 33 H 1.08997 * 109.47200 * 60.00362 * 7 5 4 34 34 H 1.09001 * 109.47499 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.47253 * 299.99778 * 7 5 4 36 36 H 1.07994 * 119.96735 * 359.97438 * 9 8 5 37 37 H 1.07998 * 120.03140 * 180.27168 * 10 9 8 38 38 H 0.97000 * 120.00233 * 180.02562 * 16 15 13 39 39 H 1.07991 * 120.03599 * 179.97438 * 21 11 10 40 40 H 1.08000 * 119.95871 * 180.02562 * 22 21 11 41 41 H 1.08006 * 125.52000 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.47064 * 90.00596 * 28 27 23 43 43 H 1.09005 * 109.47091 * 209.99925 * 28 27 23 44 44 H 1.08994 * 109.47585 * 330.00681 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 1 1.2577 0.9328 -2.2907 7 6 3.4111 0.9807 -2.3224 8 6 1.9786 -0.5678 -3.6259 9 6 2.6383 -1.7775 -3.7451 10 6 2.5404 -2.5067 -4.9138 11 6 1.7879 -2.0188 -5.9741 12 8 1.6938 -2.7308 -7.1260 13 6 0.8568 -2.2580 -8.0713 14 1 0.3607 -1.3095 -7.9278 15 6 0.6328 -2.9896 -9.2277 16 7 -0.1843 -2.5286 -10.1498 17 14 1.4913 -4.6299 -9.4761 18 1 0.6484 -5.7190 -8.9206 19 1 1.7062 -4.8613 -10.9271 20 1 2.8020 -4.6133 -8.7781 21 6 1.1312 -0.8009 -5.8533 22 6 1.2287 -0.0789 -4.6801 23 6 2.0324 -0.7104 1.2304 24 7 2.0305 -2.0041 1.4253 25 6 2.5468 -2.2818 2.6218 26 7 2.8864 -1.1636 3.2073 27 7 2.5659 -0.1258 2.3170 28 6 2.7696 1.3091 2.5312 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.9173 -1.1206 -1.0287 33 1 4.2359 0.2704 -2.3786 34 1 3.4580 1.6593 -3.1740 35 1 3.4863 1.5523 -1.3974 36 1 3.2273 -2.1541 -2.9220 37 1 3.0522 -3.4534 -5.0047 38 1 -0.3413 -3.0406 -10.9586 39 1 0.5455 -0.4187 -6.6762 40 1 0.7180 0.8679 -4.5854 41 1 2.6662 -3.2705 3.0397 42 1 1.8855 1.7347 3.0058 43 1 3.6361 1.4610 3.1749 44 1 2.9387 1.7992 1.5725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788984214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:21:17 Heat of formation + Delta-G solvation = 95.708940 kcal Electronic energy + Delta-G solvation = -25617.940898 eV Core-core repulsion = 21959.349748 eV Total energy + Delta-G solvation = -3658.591150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.41353 -39.34880 -38.01701 -36.21584 -34.41238 -33.16730 -32.27851 -30.56099 -30.23839 -28.70002 -27.97444 -27.66064 -25.34031 -24.15134 -22.50396 -22.16424 -21.95972 -20.11582 -19.98050 -17.79602 -17.63728 -17.14842 -16.36117 -16.22382 -15.51087 -14.90512 -14.84649 -14.45995 -13.98415 -13.78188 -13.77023 -13.69102 -13.57459 -13.51511 -13.19841 -12.85118 -12.69132 -12.48934 -12.34985 -12.25535 -12.15952 -11.81744 -11.72481 -11.32019 -11.12133 -10.69751 -10.64414 -10.56350 -10.19467 -10.10987 -10.01602 -9.83634 -9.34323 -8.83074 -8.54224 -8.18352 -7.24691 -6.38294 -4.04592 1.27454 1.93687 2.19804 2.27195 2.71579 3.24840 3.29014 3.43506 3.70478 3.85267 4.16252 4.27105 4.42500 4.54706 4.59020 4.69697 4.84415 4.92523 4.94224 5.04684 5.11221 5.14607 5.20350 5.27267 5.43614 5.58717 5.63584 5.69645 5.74942 5.88257 5.97646 6.04025 6.10166 6.16840 6.19486 6.37821 6.43076 6.61803 6.76823 6.89440 7.13382 7.22479 7.32805 7.37371 7.66433 7.84060 7.86712 8.07975 8.97493 9.61099 10.69500 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.002507 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.942492 B =11167.012176 C =11614.298910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.169 3.831 3 H 0.061 0.939 4 N -0.657 5.657 5 C 0.139 3.861 6 H 0.081 0.919 7 C -0.178 4.178 8 C -0.158 4.158 9 C -0.053 4.053 10 C -0.193 4.193 11 C 0.160 3.840 12 O -0.219 6.219 13 C -0.388 4.388 14 H 0.106 0.894 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.221 4.221 22 C -0.068 4.068 23 C 0.275 3.725 24 N -0.516 5.516 25 C 0.198 3.802 26 N -0.325 5.325 27 N -0.382 5.382 28 C 0.093 3.907 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.347 0.653 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.279 0.721 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.218 0.782 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.540 9.147 23.544 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.057 3.943 3 H 0.078 0.922 4 N -0.290 5.290 5 C 0.030 3.970 6 H 0.099 0.901 7 C -0.237 4.237 8 C -0.160 4.160 9 C -0.071 4.071 10 C -0.212 4.212 11 C 0.108 3.892 12 O -0.125 6.125 13 C -0.464 4.464 14 H 0.123 0.877 15 C -0.140 4.140 16 N -0.520 5.520 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.184 1.184 21 C -0.240 4.240 22 C -0.087 4.087 23 C -0.003 4.003 24 N -0.242 5.242 25 C -0.105 4.105 26 N -0.152 5.152 27 N -0.173 5.173 28 C -0.049 4.049 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.167 0.833 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.125 0.875 41 H 0.234 0.766 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.159 8.533 23.599 25.620 hybrid contribution 0.960 0.097 -0.036 0.966 sum 6.120 8.630 23.563 25.829 Atomic orbital electron populations 1.21802 0.91856 1.04165 1.01640 1.20017 0.97109 0.93711 0.83503 0.92170 1.60650 1.34372 1.31997 1.01968 1.20316 0.96438 0.91916 0.88378 0.90055 1.22532 0.98697 1.01048 1.01420 1.19015 1.04733 0.97679 0.94532 1.20318 0.97777 0.93560 0.95459 1.20203 1.06104 1.01935 0.92967 1.19132 0.93409 0.90552 0.86135 1.83572 1.58455 1.48502 1.21924 1.20759 1.22198 1.07073 0.96344 0.87667 1.24461 0.96011 0.99180 0.94384 1.69644 1.34511 1.39217 1.08602 0.86187 0.81033 0.82498 0.77219 1.19878 1.20872 1.18377 1.21214 1.06429 0.96772 0.99555 1.20564 0.97144 0.98304 0.92662 1.24463 0.94938 0.89613 0.91245 1.70569 1.23507 1.12199 1.17968 1.26075 0.96148 0.98416 0.89879 1.78046 1.25575 0.95713 1.15899 1.50333 1.46240 1.07846 1.12899 1.21971 1.04046 0.74883 1.04007 0.92881 0.90915 0.90426 0.83341 0.92244 0.91378 0.93680 0.87191 0.86724 0.91117 0.85079 0.87514 0.76569 0.90045 0.88830 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.38 37.16 0.35 -0.90 16 2 C 0.17 1.55 2.80 -68.86 -0.19 1.36 16 3 H 0.06 0.42 5.77 -51.93 -0.30 0.12 16 4 N -0.66 -7.37 5.50 -102.17 -0.56 -7.93 16 5 C 0.14 1.58 2.60 -68.87 -0.18 1.40 16 6 H 0.08 0.85 6.97 -51.93 -0.36 0.49 16 7 C -0.18 -1.72 9.12 37.16 0.34 -1.38 16 8 C -0.16 -2.45 4.96 -104.57 -0.52 -2.97 16 9 C -0.05 -0.88 9.31 -39.61 -0.37 -1.25 16 10 C -0.19 -3.84 9.99 -39.39 -0.39 -4.23 16 11 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 12 O -0.22 -5.82 8.59 0.08 0.00 -5.82 16 13 C -0.39 -10.97 9.95 30.89 0.31 -10.66 16 14 H 0.11 3.03 5.44 -52.48 -0.29 2.74 16 15 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 16 N -0.88 -25.57 13.96 55.48 0.77 -24.80 16 17 Si 0.90 21.87 28.62 -169.99 -4.86 17.01 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.22 -4.67 9.17 -39.39 -0.36 -5.03 16 22 C -0.07 -1.17 9.66 -39.61 -0.38 -1.55 16 23 C 0.27 2.91 6.47 -155.70 -1.01 1.90 16 24 N -0.52 -6.42 11.18 -11.97 -0.13 -6.55 16 25 C 0.20 2.13 13.03 -91.82 -1.20 0.93 16 26 N -0.32 -3.64 12.70 29.29 0.37 -3.27 16 27 N -0.38 -3.64 4.04 -65.10 -0.26 -3.90 16 28 C 0.09 0.47 11.29 59.85 0.68 1.14 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.65 7.43 -51.93 -0.39 0.26 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.35 3.99 7.43 -39.29 -0.29 3.70 16 33 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.34 7.43 -51.93 -0.39 -0.05 16 36 H 0.11 1.60 7.25 -52.49 -0.38 1.22 16 37 H 0.11 2.17 8.06 -52.49 -0.42 1.74 16 38 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.13 2.94 5.64 -52.49 -0.30 2.64 16 40 H 0.11 1.55 8.03 -52.49 -0.42 1.12 16 41 H 0.22 1.56 8.06 -52.48 -0.42 1.13 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.28 6.98 -51.93 -0.36 -0.08 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -32.74 367.40 -8.41 -41.15 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.99 Total: 4.75 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -3.29 Total: -16.16 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.19 Total: -46.46 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: 0.00 Total: -5.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.86 Total: 17.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.74 -8.41 -41.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788984214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.864 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds