Wall clock time and date at job start Fri Apr 10 2020 23:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47737 * 2 1 4 4 N 1.46908 * 109.47208 * 119.99838 * 2 1 3 5 5 C 1.46895 * 110.99724 * 274.99561 * 4 2 1 6 6 H 1.09005 * 109.47401 * 35.00145 * 5 4 2 7 7 C 1.53005 * 109.47290 * 275.00052 * 5 4 2 8 8 C 1.50706 * 109.47067 * 155.00048 * 5 4 2 9 9 C 1.38294 * 119.92901 * 220.00151 * 8 5 4 10 10 C 1.38107 * 120.06624 * 179.97438 * 9 8 5 11 11 C 1.38869 * 119.93033 * 359.97438 * 10 9 8 12 12 O 1.35750 * 120.07285 * 180.02562 * 11 10 9 13 13 C 1.34825 * 117.00690 * 174.43767 * 12 11 10 14 14 H 1.08005 * 119.99952 * 5.05628 * 13 12 11 15 15 C 1.38648 * 120.00448 * 185.05536 * 13 12 11 16 16 N 1.31555 * 120.00522 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00059 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47146 * 89.99981 * 17 15 13 19 19 H 1.48503 * 109.47389 * 210.00284 * 17 15 13 20 20 H 1.48505 * 109.46875 * 330.00067 * 17 15 13 21 21 C 1.38880 * 119.86399 * 0.02562 * 11 10 9 22 22 C 1.38100 * 119.93272 * 0.02562 * 21 11 10 23 23 C 1.50706 * 109.47364 * 239.99368 * 2 1 3 24 24 N 1.30825 * 125.96241 * 285.03266 * 23 2 1 25 25 C 1.33237 * 109.83072 * 179.97438 * 24 23 2 26 26 N 1.30710 * 108.94725 * 0.02562 * 25 24 23 27 27 N 1.34431 * 125.95850 * 104.70878 * 23 2 1 28 28 C 1.46501 * 126.82250 * 0.02562 * 27 23 2 29 29 H 1.09005 * 109.46562 * 299.99974 * 1 2 3 30 30 H 1.08994 * 109.47274 * 59.99878 * 1 2 3 31 31 H 1.09000 * 109.47154 * 180.02562 * 1 2 3 32 32 H 1.00906 * 110.99896 * 151.04394 * 4 2 1 33 33 H 1.08996 * 109.47090 * 60.00021 * 7 5 4 34 34 H 1.09005 * 109.46918 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.46917 * 299.99907 * 7 5 4 36 36 H 1.07998 * 119.96965 * 359.69783 * 9 8 5 37 37 H 1.07999 * 120.03071 * 179.97438 * 10 9 8 38 38 H 0.97000 * 120.00919 * 179.97438 * 16 15 13 39 39 H 1.08006 * 120.03804 * 179.97438 * 21 11 10 40 40 H 1.07995 * 119.96969 * 179.97438 * 22 21 11 41 41 H 1.08002 * 125.53066 * 180.02562 * 25 24 23 42 42 H 1.08994 * 109.47272 * 89.99576 * 28 27 23 43 43 H 1.09003 * 109.46313 * 209.99474 * 28 27 23 44 44 H 1.08999 * 109.47013 * 329.98837 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3468 6 1 1.2577 0.9331 2.2906 7 6 3.4112 0.9810 2.3222 8 6 1.9787 -0.5675 3.6259 9 6 1.2285 -0.0787 4.6799 10 6 1.1310 -0.8007 5.8532 11 6 1.7868 -2.0188 5.9737 12 8 1.6925 -2.7311 7.1254 13 6 2.2564 -3.9557 7.1359 14 1 2.8245 -4.2959 6.2826 15 6 2.1072 -4.7784 8.2419 16 7 2.6571 -5.9735 8.2519 17 14 1.1253 -4.1899 9.7180 18 1 -0.2992 -4.5743 9.5501 19 1 1.6645 -4.8149 10.9524 20 1 1.2300 -2.7124 9.8250 21 6 2.5394 -2.5069 4.9134 22 6 2.6339 -1.7798 3.7432 23 6 2.0324 -0.7106 -1.2304 24 7 2.0296 -2.0042 -1.4255 25 6 2.5463 -2.2820 -2.6218 26 7 2.8871 -1.1640 -3.2069 27 7 2.5560 -0.1253 -2.3215 28 6 2.7469 1.3105 -2.5415 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.9173 -1.1205 1.0288 33 1 3.4863 1.5524 1.3971 34 1 3.4576 1.6604 3.1734 35 1 4.2360 0.2706 2.3785 36 1 0.7220 0.8706 4.5871 37 1 0.5453 -0.4183 6.6761 38 1 2.5530 -6.5489 9.0258 39 1 3.0509 -3.4538 5.0043 40 1 3.2193 -2.1586 2.9185 41 1 2.6644 -3.2706 -3.0402 42 1 3.7313 1.6060 -2.1788 43 1 2.6719 1.5278 -3.6070 44 1 1.9793 1.8659 -2.0026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788984215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:21:24 Heat of formation + Delta-G solvation = 95.842577 kcal Electronic energy + Delta-G solvation = -25665.131232 eV Core-core repulsion = 22006.545876 eV Total energy + Delta-G solvation = -3658.585355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.38235 -39.34286 -37.99921 -36.21256 -34.39005 -33.15894 -32.26312 -30.52379 -30.20301 -28.77718 -27.93374 -27.64222 -25.28609 -24.09955 -22.68796 -22.21393 -21.72970 -20.11650 -19.92357 -17.86147 -17.60724 -17.16798 -16.33623 -16.09181 -15.56217 -14.85608 -14.82192 -14.32479 -14.07122 -13.93728 -13.70037 -13.67784 -13.55320 -13.44924 -13.18353 -12.89924 -12.65544 -12.53137 -12.29649 -12.24108 -12.09617 -11.84410 -11.70191 -11.32976 -11.13674 -10.68039 -10.65518 -10.55402 -10.15961 -10.10880 -9.98873 -9.80213 -9.32387 -8.82210 -8.52114 -8.17878 -7.24484 -6.36990 -4.03401 1.29981 1.96447 2.19973 2.27691 2.75036 3.24777 3.28695 3.42928 3.73265 3.86239 4.19147 4.27338 4.45550 4.55824 4.63710 4.70841 4.86408 4.91841 4.93574 5.05315 5.12639 5.15129 5.20785 5.28277 5.42969 5.59562 5.65608 5.68245 5.78622 5.83695 6.00787 6.05676 6.10779 6.19745 6.20763 6.36556 6.45613 6.62902 6.81830 6.87665 7.11970 7.24342 7.31750 7.41979 7.67102 7.85890 7.90000 8.08981 8.98511 9.61601 10.70851 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022745 B = 0.002622 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.758084 B =10678.056811 C =11343.888792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.169 3.831 3 H 0.061 0.939 4 N -0.657 5.657 5 C 0.139 3.861 6 H 0.081 0.919 7 C -0.178 4.178 8 C -0.159 4.159 9 C -0.072 4.072 10 C -0.193 4.193 11 C 0.159 3.841 12 O -0.219 6.219 13 C -0.388 4.388 14 H 0.106 0.894 15 C 0.062 3.938 16 N -0.881 5.881 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.221 4.221 22 C -0.049 4.049 23 C 0.274 3.726 24 N -0.515 5.515 25 C 0.198 3.802 26 N -0.325 5.325 27 N -0.382 5.382 28 C 0.093 3.907 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.348 0.652 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.279 0.721 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.218 0.782 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 16.844 -19.353 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.057 3.943 3 H 0.078 0.922 4 N -0.290 5.290 5 C 0.030 3.970 6 H 0.099 0.901 7 C -0.237 4.237 8 C -0.160 4.160 9 C -0.090 4.090 10 C -0.212 4.212 11 C 0.107 3.893 12 O -0.125 6.125 13 C -0.463 4.463 14 H 0.124 0.876 15 C -0.140 4.140 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.184 1.184 21 C -0.240 4.240 22 C -0.067 4.067 23 C -0.003 4.003 24 N -0.241 5.241 25 C -0.104 4.104 26 N -0.152 5.152 27 N -0.174 5.174 28 C -0.049 4.049 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.168 0.832 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.125 0.875 41 H 0.235 0.765 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.410 16.310 -19.364 25.357 hybrid contribution 0.571 0.592 0.324 0.884 sum -0.839 16.902 -19.040 25.474 Atomic orbital electron populations 1.21810 0.91961 1.04196 1.01544 1.20005 0.97023 0.93726 0.83575 0.92181 1.60656 1.34515 1.31881 1.01934 1.20311 0.96378 0.91876 0.88429 0.90116 1.22536 0.98769 1.01042 1.01384 1.19025 1.04833 0.97624 0.94542 1.20395 0.97885 0.98274 0.92474 1.20134 1.06186 0.95713 0.99187 1.19126 0.92994 0.91291 0.85850 1.83563 1.69760 1.28922 1.30224 1.20770 1.31729 0.88166 1.05672 0.87624 1.24459 0.96933 0.94252 0.98399 1.69646 1.43269 1.07682 1.31328 0.86187 0.80020 0.80066 0.80646 1.19906 1.20869 1.18409 1.21272 1.05485 1.02901 0.94334 1.20479 0.97127 0.93286 0.95825 1.24462 0.95106 0.89613 0.91142 1.70570 1.23434 1.12199 1.17930 1.26083 0.95980 0.98444 0.89937 1.78049 1.25281 0.95696 1.16201 1.50335 1.46491 1.07750 1.12815 1.21964 1.03300 0.74887 1.04766 0.90978 0.92909 0.90391 0.83219 0.93638 0.91443 0.92201 0.87198 0.86698 0.91113 0.85121 0.87504 0.76541 0.90210 0.88803 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.38 37.16 0.35 -0.90 16 2 C 0.17 1.59 2.70 -68.86 -0.19 1.40 16 3 H 0.06 0.42 6.12 -51.93 -0.32 0.11 16 4 N -0.66 -7.64 5.50 -102.16 -0.56 -8.20 16 5 C 0.14 1.59 2.60 -68.86 -0.18 1.41 16 6 H 0.08 0.82 6.97 -51.93 -0.36 0.46 16 7 C -0.18 -1.75 9.12 37.16 0.34 -1.41 16 8 C -0.16 -2.47 4.96 -104.57 -0.52 -2.99 16 9 C -0.07 -1.15 9.66 -39.61 -0.38 -1.54 16 10 C -0.19 -3.75 9.99 -39.40 -0.39 -4.15 16 11 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 12 O -0.22 -5.83 8.59 0.06 0.00 -5.83 16 13 C -0.39 -11.04 9.95 30.88 0.31 -10.73 16 14 H 0.11 3.08 5.44 -52.48 -0.29 2.80 16 15 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 16 N -0.88 -25.75 13.96 55.48 0.77 -24.98 16 17 Si 0.91 21.86 28.62 -169.99 -4.86 16.99 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.26 -6.28 7.11 56.52 0.40 -5.87 16 21 C -0.22 -4.78 9.17 -39.39 -0.36 -5.14 16 22 C -0.05 -0.87 9.31 -39.61 -0.37 -1.24 16 23 C 0.27 3.00 6.47 -155.70 -1.01 2.00 16 24 N -0.51 -6.70 11.18 -11.97 -0.13 -6.83 16 25 C 0.20 2.25 13.03 -91.82 -1.20 1.05 16 26 N -0.32 -3.78 12.70 29.29 0.37 -3.41 16 27 N -0.38 -3.77 4.04 -65.10 -0.26 -4.03 16 28 C 0.09 0.48 11.11 59.85 0.67 1.15 16 29 H 0.07 0.62 7.43 -51.93 -0.39 0.23 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.35 4.27 7.43 -39.29 -0.29 3.97 16 33 H 0.04 0.35 7.43 -51.93 -0.39 -0.03 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 36 H 0.11 1.41 8.03 -52.49 -0.42 0.99 16 37 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.13 3.02 5.64 -52.48 -0.30 2.72 16 40 H 0.11 1.74 7.24 -52.49 -0.38 1.36 16 41 H 0.22 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.28 7.39 -51.93 -0.38 -0.11 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -33.02 367.88 -8.45 -41.47 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.03 Total: 5.26 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -3.29 Total: -15.99 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.19 Total: -47.45 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: 0.00 Total: -5.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.86 Total: 16.99 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.02 -8.45 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788984215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.312 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds