Wall clock time and date at job start Fri Apr 10 2020 23:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47737 * 2 1 4 4 N 1.46908 * 109.47208 * 119.99838 * 2 1 3 5 5 C 1.46895 * 110.99724 * 274.99561 * 4 2 1 6 6 H 1.09005 * 109.47401 * 35.00145 * 5 4 2 7 7 C 1.53005 * 109.47290 * 275.00052 * 5 4 2 8 8 C 1.50706 * 109.47067 * 155.00048 * 5 4 2 9 9 C 1.38294 * 119.92901 * 220.00151 * 8 5 4 10 10 C 1.38107 * 120.06624 * 179.97438 * 9 8 5 11 11 C 1.38869 * 119.93033 * 359.97438 * 10 9 8 12 12 O 1.35750 * 120.07285 * 180.02562 * 11 10 9 13 13 C 1.34825 * 117.00690 * 174.43767 * 12 11 10 14 14 H 1.08005 * 119.99952 * 5.05628 * 13 12 11 15 15 C 1.38648 * 120.00448 * 185.05536 * 13 12 11 16 16 N 1.31555 * 120.00522 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00059 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47146 * 89.99981 * 17 15 13 19 19 H 1.48503 * 109.47389 * 210.00284 * 17 15 13 20 20 H 1.48505 * 109.46875 * 330.00067 * 17 15 13 21 21 C 1.38880 * 119.86399 * 0.02562 * 11 10 9 22 22 C 1.38100 * 119.93272 * 0.02562 * 21 11 10 23 23 C 1.50706 * 109.47364 * 239.99368 * 2 1 3 24 24 N 1.30825 * 125.96241 * 285.03266 * 23 2 1 25 25 C 1.33237 * 109.83072 * 179.97438 * 24 23 2 26 26 N 1.30710 * 108.94725 * 0.02562 * 25 24 23 27 27 N 1.34431 * 125.95850 * 104.70878 * 23 2 1 28 28 C 1.46501 * 126.82250 * 0.02562 * 27 23 2 29 29 H 1.09005 * 109.46562 * 299.99974 * 1 2 3 30 30 H 1.08994 * 109.47274 * 59.99878 * 1 2 3 31 31 H 1.09000 * 109.47154 * 180.02562 * 1 2 3 32 32 H 1.00906 * 110.99896 * 151.04394 * 4 2 1 33 33 H 1.08996 * 109.47090 * 60.00021 * 7 5 4 34 34 H 1.09005 * 109.46918 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.46917 * 299.99907 * 7 5 4 36 36 H 1.07998 * 119.96965 * 359.69783 * 9 8 5 37 37 H 1.07999 * 120.03071 * 179.97438 * 10 9 8 38 38 H 0.97000 * 120.00919 * 179.97438 * 16 15 13 39 39 H 1.08006 * 120.03804 * 179.97438 * 21 11 10 40 40 H 1.07995 * 119.96969 * 179.97438 * 22 21 11 41 41 H 1.08002 * 125.53066 * 180.02562 * 25 24 23 42 42 H 1.08994 * 109.47272 * 89.99576 * 28 27 23 43 43 H 1.09003 * 109.46313 * 209.99474 * 28 27 23 44 44 H 1.08999 * 109.47013 * 329.98837 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3468 6 1 1.2577 0.9331 2.2906 7 6 3.4112 0.9810 2.3222 8 6 1.9787 -0.5675 3.6259 9 6 1.2285 -0.0787 4.6799 10 6 1.1310 -0.8007 5.8532 11 6 1.7868 -2.0188 5.9737 12 8 1.6925 -2.7311 7.1254 13 6 2.2564 -3.9557 7.1359 14 1 2.8245 -4.2959 6.2826 15 6 2.1072 -4.7784 8.2419 16 7 2.6571 -5.9735 8.2519 17 14 1.1253 -4.1899 9.7180 18 1 -0.2992 -4.5743 9.5501 19 1 1.6645 -4.8149 10.9524 20 1 1.2300 -2.7124 9.8250 21 6 2.5394 -2.5069 4.9134 22 6 2.6339 -1.7798 3.7432 23 6 2.0324 -0.7106 -1.2304 24 7 2.0296 -2.0042 -1.4255 25 6 2.5463 -2.2820 -2.6218 26 7 2.8871 -1.1640 -3.2069 27 7 2.5560 -0.1253 -2.3215 28 6 2.7469 1.3105 -2.5415 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.9173 -1.1205 1.0288 33 1 3.4863 1.5524 1.3971 34 1 3.4576 1.6604 3.1734 35 1 4.2360 0.2706 2.3785 36 1 0.7220 0.8706 4.5871 37 1 0.5453 -0.4183 6.6761 38 1 2.5530 -6.5489 9.0258 39 1 3.0509 -3.4538 5.0043 40 1 3.2193 -2.1586 2.9185 41 1 2.6644 -3.2706 -3.0402 42 1 3.7313 1.6060 -2.1788 43 1 2.6719 1.5278 -3.6070 44 1 1.9793 1.8659 -2.0026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788984215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:21:20 Heat of formation + Delta-G solvation = 74.581619 kcal Electronic energy + Delta-G solvation = -25666.053176 eV Core-core repulsion = 22006.545876 eV Total energy + Delta-G solvation = -3659.507300 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -43.15177 -40.90738 -39.28574 -37.53396 -35.08127 -34.51171 -33.93738 -31.73991 -31.40088 -29.99188 -28.89385 -28.18677 -27.19524 -24.99007 -23.95768 -23.28322 -22.92080 -21.21566 -20.86338 -19.76388 -19.09980 -18.22494 -17.15830 -16.99271 -16.54269 -16.42733 -15.77044 -15.72272 -15.60981 -15.36360 -15.05649 -14.69835 -14.34755 -14.33421 -14.08208 -14.04100 -13.97542 -13.79189 -13.60882 -13.28252 -13.04847 -12.95006 -12.71878 -12.51901 -12.40268 -12.26363 -12.10721 -11.86214 -11.71835 -11.19781 -10.99019 -10.87059 -10.75277 -10.55628 -9.70778 -9.37103 -8.87965 -8.47578 -6.19891 0.52885 0.66484 0.74273 1.32133 1.35708 1.37449 1.53384 1.92693 2.30016 2.78775 3.01831 3.03103 3.16642 3.26470 3.63510 3.78674 3.94428 4.10589 4.15726 4.24442 4.27148 4.36700 4.37974 4.45194 4.51271 4.62797 4.65855 4.73117 4.78693 4.88940 4.94216 4.99069 5.08469 5.27383 5.31029 5.36010 5.36755 5.42290 5.45137 5.66865 5.74743 5.81991 5.85503 5.97036 6.18444 6.32328 6.34488 6.87020 7.11728 7.63211 8.64549 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022745 B = 0.002622 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.758084 B =10678.056811 C =11343.888792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.174 3.826 3 H 0.098 0.902 4 N -0.676 5.676 5 C 0.143 3.857 6 H 0.112 0.888 7 C -0.174 4.174 8 C -0.131 4.131 9 C -0.062 4.062 10 C -0.191 4.191 11 C 0.115 3.885 12 O -0.247 6.247 13 C -0.397 4.397 14 H 0.076 0.924 15 C 0.006 3.994 16 N -0.928 5.928 17 Si 0.974 3.026 18 H -0.266 1.266 19 H -0.268 1.268 20 H -0.261 1.261 21 C -0.241 4.241 22 C -0.054 4.054 23 C 0.269 3.731 24 N -0.555 5.555 25 C 0.187 3.813 26 N -0.345 5.345 27 N -0.379 5.379 28 C 0.080 3.920 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.342 0.658 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.162 0.838 37 H 0.128 0.872 38 H 0.284 0.716 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.237 0.763 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.220 21.424 -20.788 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.062 3.938 3 H 0.115 0.885 4 N -0.309 5.309 5 C 0.034 3.966 6 H 0.130 0.870 7 C -0.233 4.233 8 C -0.132 4.132 9 C -0.080 4.080 10 C -0.210 4.210 11 C 0.066 3.934 12 O -0.155 6.155 13 C -0.473 4.473 14 H 0.094 0.906 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.796 3.204 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.185 1.185 21 C -0.260 4.260 22 C -0.072 4.072 23 C -0.008 4.008 24 N -0.283 5.283 25 C -0.115 4.115 26 N -0.174 5.174 27 N -0.170 5.170 28 C -0.061 4.061 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.162 0.838 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.179 0.821 37 H 0.146 0.854 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.137 0.863 41 H 0.253 0.747 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.665 20.948 -20.850 29.676 hybrid contribution 0.990 -0.590 0.392 1.218 sum -1.675 20.358 -20.458 28.910 Atomic orbital electron populations 1.21800 0.91743 1.02650 1.03067 1.20129 0.96978 0.94894 0.81771 0.88474 1.60536 1.34434 1.32797 1.03139 1.20363 0.98686 0.91496 0.86017 0.87045 1.22480 0.96808 1.00758 1.03271 1.19648 1.01113 0.96023 0.96423 1.20953 0.96888 0.99444 0.90678 1.20518 1.05246 0.94258 1.01018 1.19700 0.95175 0.92834 0.85686 1.83499 1.71488 1.28331 1.32228 1.20681 1.31890 0.89594 1.05180 0.90629 1.25318 0.98182 0.94338 1.01290 1.69740 1.45473 1.09027 1.32644 0.85174 0.78646 0.79306 0.77292 1.19105 1.19237 1.18503 1.21241 1.06180 1.02546 0.96075 1.20660 0.97702 0.94219 0.94624 1.24693 0.94926 0.89332 0.91844 1.70526 1.24815 1.13966 1.19005 1.26530 0.95818 0.99435 0.89712 1.77977 1.25882 0.96291 1.17250 1.50595 1.45390 1.08955 1.12042 1.22412 1.05174 0.72469 1.06004 0.89764 0.91049 0.93495 0.83840 0.90559 0.91002 0.93738 0.82082 0.85357 0.90648 0.88400 0.86316 0.74676 0.88792 0.88112 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.38 71.98 0.68 -1.27 16 2 C 0.17 2.56 2.70 44.17 0.12 2.68 16 3 H 0.10 0.74 6.12 -2.39 -0.01 0.73 16 4 N -0.68 -13.52 5.50 -477.12 -2.62 -16.15 16 5 C 0.14 2.57 2.60 44.17 0.11 2.69 16 6 H 0.11 1.45 6.97 -2.38 -0.02 1.43 16 7 C -0.17 -2.56 9.12 71.98 0.66 -1.90 16 8 C -0.13 -3.65 4.96 -19.83 -0.10 -3.75 16 9 C -0.06 -1.73 9.66 22.25 0.21 -1.51 16 10 C -0.19 -7.14 9.99 22.39 0.22 -6.92 16 11 C 0.11 5.46 6.65 22.57 0.15 5.61 16 12 O -0.25 -13.79 8.59 -22.69 -0.19 -13.98 16 13 C -0.40 -24.19 9.95 67.92 0.68 -23.52 16 14 H 0.08 4.88 5.44 -2.91 -0.02 4.87 16 15 C 0.01 0.38 5.49 84.83 0.47 0.85 16 16 N -0.93 -57.09 13.96 21.61 0.30 -56.78 16 17 Si 0.97 46.46 28.62 68.60 1.96 48.42 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 21 C -0.24 -11.04 9.17 22.39 0.21 -10.83 16 22 C -0.05 -1.91 9.31 22.25 0.21 -1.70 16 23 C 0.27 5.26 6.47 138.23 0.89 6.15 16 24 N -0.56 -14.03 11.18 -191.78 -2.14 -16.18 16 25 C 0.19 4.16 13.03 180.77 2.36 6.52 16 26 N -0.35 -7.62 12.70 -61.25 -0.78 -8.40 16 27 N -0.38 -6.46 4.04 -359.87 -1.45 -7.91 16 28 C 0.08 0.51 11.11 127.77 1.42 1.93 16 29 H 0.08 1.02 7.43 -2.38 -0.02 1.00 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.34 7.64 7.43 -89.69 -0.67 6.97 16 33 H 0.08 0.70 7.43 -2.39 -0.02 0.69 16 34 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.04 0.81 8.13 -2.39 -0.02 0.79 16 36 H 0.16 2.99 8.03 -2.91 -0.02 2.97 16 37 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 38 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 39 H 0.10 5.05 5.64 -2.91 -0.02 5.03 16 40 H 0.12 3.88 7.24 -2.91 -0.02 3.86 16 41 H 0.24 3.68 8.06 -2.91 -0.02 3.66 16 42 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.10 0.53 8.14 -2.39 -0.02 0.52 16 44 H 0.12 0.08 7.39 -2.39 -0.02 0.06 16 Total: -1.00 -78.73 367.88 3.71 -75.02 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.36 Total: 20.94 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 8.28 Total: -24.97 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -6.70 Total: -105.42 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.19 Total: -13.98 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.96 Total: 48.42 kcal Total: -78.73 3.71 -75.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788984215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.598 kcal (2) G-P(sol) polarization free energy of solvation -78.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds