Wall clock time and date at job start Fri Apr 10 2020 23:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00248 * 2 1 4 4 H 1.48500 * 109.46898 * 272.90574 * 3 2 1 5 5 H 1.48498 * 109.46915 * 32.90544 * 3 2 1 6 6 H 1.48504 * 109.47004 * 152.90768 * 3 2 1 7 7 C 1.38818 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00127 * 339.36997 * 7 2 1 9 9 N 1.36934 * 119.99666 * 159.36548 * 7 2 1 10 10 C 1.46928 * 120.63220 * 332.62868 * 9 7 2 11 11 C 1.53190 * 108.77705 * 233.58767 * 10 9 7 12 12 C 1.53044 * 109.31340 * 305.36545 * 11 10 9 13 13 N 1.46500 * 109.46070 * 181.38313 * 12 11 10 14 14 C 1.34771 * 119.99946 * 154.97171 * 13 12 11 15 15 O 1.21280 * 120.00121 * 0.02562 * 14 13 12 16 16 C 1.50710 * 120.00037 * 179.72750 * 14 13 12 17 17 C 1.52996 * 109.46903 * 180.27712 * 16 14 13 18 18 H 1.08994 * 110.67696 * 51.76692 * 17 16 14 19 19 C 1.54890 * 110.75641 * 288.32366 * 17 16 14 20 20 C 1.54270 * 104.19908 * 203.74712 * 19 17 16 21 21 C 1.53876 * 106.59623 * 23.60905 * 20 19 17 22 22 F 1.39894 * 110.03340 * 240.71618 * 21 20 19 23 23 F 1.39901 * 110.07163 * 119.30803 * 21 20 19 24 24 C 1.54270 * 106.59916 * 0.02562 * 21 20 19 25 25 C 1.53037 * 109.52435 * 61.37258 * 12 11 10 26 26 C 1.46922 * 120.63222 * 152.61103 * 9 7 2 27 27 H 0.97004 * 120.00063 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.58630 * 113.80414 * 10 9 7 29 29 H 1.09001 * 109.58538 * 353.37349 * 10 9 7 30 30 H 1.09002 * 109.49774 * 185.41107 * 11 10 9 31 31 H 1.08998 * 109.49998 * 65.31674 * 11 10 9 32 32 H 1.08998 * 109.45615 * 301.35594 * 12 11 10 33 33 H 0.97008 * 120.00107 * 334.97643 * 13 12 11 34 34 H 1.09000 * 109.46926 * 300.27617 * 16 14 13 35 35 H 1.09000 * 109.46640 * 60.27474 * 16 14 13 36 36 H 1.09002 * 110.48713 * 322.42976 * 19 17 16 37 37 H 1.09001 * 110.48470 * 85.06706 * 19 17 16 38 38 H 1.09002 * 110.02733 * 264.32974 * 20 19 17 39 39 H 1.08994 * 110.07062 * 142.91806 * 20 19 17 40 40 H 1.08999 * 110.48650 * 217.71013 * 24 21 20 41 41 H 1.08998 * 110.60248 * 95.11997 * 24 21 20 42 42 H 1.09003 * 109.50126 * 58.58356 * 25 12 11 43 43 H 1.09001 * 109.49667 * 178.67799 * 25 12 11 44 44 H 1.08998 * 109.58757 * 246.20148 * 26 9 7 45 45 H 1.09003 * 109.58858 * 6.62446 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4362 2.0818 -1.3983 5 1 1.4798 2.6341 0.7606 6 1 3.5772 1.4231 0.6377 7 6 2.0102 -1.2022 0.0005 8 1 1.5221 -2.1073 0.3305 9 7 3.3136 -1.2404 -0.4174 10 6 3.8177 -0.2594 -1.3881 11 6 4.4629 -1.0095 -2.5576 12 6 5.5295 -1.9657 -2.0188 13 7 6.1716 -2.6607 -3.1372 14 6 7.4222 -3.1445 -3.0012 15 8 8.0158 -3.0048 -1.9529 16 6 8.0805 -3.8649 -4.1497 17 6 9.4824 -4.3145 -3.7333 18 1 9.4463 -4.8674 -2.7947 19 6 10.4381 -3.1006 -3.6236 20 6 11.8437 -3.7072 -3.8144 21 6 11.6535 -5.0210 -4.5925 22 9 12.1175 -6.0997 -3.8323 23 9 12.3408 -4.9620 -5.8096 24 6 10.1390 -5.1666 -4.8480 25 6 4.8752 -2.9907 -1.0897 26 6 4.2349 -2.2630 0.0966 27 1 -0.4850 0.8401 -0.0004 28 1 4.5600 0.3797 -0.9098 29 1 2.9911 0.3488 -1.7556 30 1 4.9256 -0.2942 -3.2376 31 1 3.7005 -1.5778 -3.0902 32 1 6.2784 -1.3994 -1.4650 33 1 5.6968 -2.7727 -3.9756 34 1 7.4850 -4.7366 -4.4210 35 1 8.1533 -3.1939 -5.0056 36 1 10.2257 -2.3755 -4.4093 37 1 10.3533 -2.6358 -2.6413 38 1 12.2975 -3.9102 -2.8443 39 1 12.4721 -3.0231 -4.3846 40 1 9.8357 -6.2097 -4.7590 41 1 9.8767 -4.7766 -5.8315 42 1 4.1088 -3.5402 -1.6363 43 1 5.6313 -3.6858 -0.7247 44 1 5.0112 -1.7874 0.6960 45 1 3.6838 -2.9769 0.7088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797865766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:21:59 Heat of formation + Delta-G solvation = -134.565767 kcal Electronic energy + Delta-G solvation = -26865.370762 eV Core-core repulsion = 22746.104965 eV Total energy + Delta-G solvation = -4119.265797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -49.21976 -47.29134 -40.11503 -38.21090 -37.22435 -34.58915 -32.38919 -31.56623 -30.47270 -30.02423 -29.01091 -26.26157 -24.67625 -22.97621 -22.01674 -21.35637 -20.98346 -20.19249 -19.59551 -17.95056 -17.36789 -17.07588 -16.73103 -16.22876 -15.95225 -15.33414 -15.10623 -14.73031 -14.56450 -14.20422 -14.08448 -13.86268 -13.68112 -13.62212 -13.57436 -13.19666 -12.96311 -12.59109 -12.38972 -12.21721 -12.01168 -11.94930 -11.83191 -11.73888 -11.27524 -11.07509 -11.02249 -10.95630 -10.85960 -10.59403 -10.31824 -10.18772 -9.91524 -9.67296 -9.49142 -8.85760 -8.66206 -7.02525 -5.97997 -3.33999 2.63790 3.11756 3.28104 3.42362 3.46551 3.49551 3.60185 3.81397 3.99712 4.49728 4.53945 4.61461 4.61790 4.78795 4.91782 4.95284 4.99901 5.06287 5.17596 5.19349 5.25545 5.29445 5.35914 5.41452 5.48978 5.62581 5.62824 5.78100 5.84908 5.95542 6.00032 6.06955 6.13128 6.29163 6.35789 6.54169 6.60821 6.61888 6.70580 6.88488 7.56042 7.92850 8.25427 8.29914 8.90672 9.68687 10.06180 11.17958 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.039092 B = 0.002343 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.081299 B =11945.952097 C =12095.464697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.140 4.140 12 C 0.150 3.850 13 N -0.725 5.725 14 C 0.510 3.490 15 O -0.539 6.539 16 C -0.134 4.134 17 C -0.074 4.074 18 H 0.097 0.903 19 C -0.115 4.115 20 C -0.164 4.164 21 C 0.280 3.720 22 F -0.199 7.199 23 F -0.202 7.202 24 C -0.159 4.159 25 C -0.141 4.141 26 C 0.150 3.850 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.397 0.603 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.025 0.975 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.891 -8.426 -12.860 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.180 4.180 12 C 0.047 3.953 13 N -0.376 5.376 14 C 0.296 3.704 15 O -0.416 6.416 16 C -0.174 4.174 17 C -0.093 4.093 18 H 0.115 0.885 19 C -0.153 4.153 20 C -0.202 4.202 21 C 0.244 3.756 22 F -0.180 7.180 23 F -0.183 7.183 24 C -0.197 4.197 25 C -0.181 4.181 26 C 0.024 3.976 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.231 0.769 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.182 -8.259 -12.074 25.742 hybrid contribution 0.280 0.770 -0.592 1.011 sum 21.462 -7.489 -12.666 26.022 Atomic orbital electron populations 1.69834 1.05726 1.26568 1.52970 1.25291 0.95242 0.97578 0.99522 0.86969 0.80133 0.84681 0.77002 1.21641 1.23097 1.19491 1.18931 0.84901 0.94806 1.40162 0.89632 1.44405 1.08704 1.33391 1.46511 1.21306 0.97290 0.92056 0.89082 1.22342 0.97509 0.98426 0.99741 1.20985 0.94297 0.93124 0.86921 1.46317 1.15640 1.58406 1.17196 1.20536 0.81539 0.78992 0.89335 1.90698 1.63842 1.57780 1.29329 1.21688 0.96372 1.01534 0.97854 1.21838 0.92857 0.96204 0.98368 0.88505 1.22432 0.91434 0.97246 1.04165 1.23196 1.00591 0.94451 1.01961 1.21855 0.90631 0.86100 0.77002 1.93019 1.90508 1.58468 1.76011 1.93009 1.82183 1.96755 1.46366 1.23439 0.91088 1.03380 1.01786 1.22372 0.99346 0.97992 0.98362 1.20897 0.92320 0.91342 0.93038 0.92749 0.95500 0.90508 0.92302 0.91163 0.89952 0.76943 0.88515 0.88653 0.90872 0.88936 0.88700 0.88868 0.88774 0.88219 0.91884 0.92299 0.95719 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.47 13.97 55.49 0.78 -26.70 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 22.02 24.35 -169.99 -4.14 17.88 16 4 H -0.29 -6.87 6.62 56.52 0.37 -6.50 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.66 6.64 56.52 0.38 -6.29 16 7 C -0.26 -7.14 10.04 -15.06 -0.15 -7.29 16 8 H 0.09 2.51 8.05 -52.49 -0.42 2.09 16 9 N -0.61 -14.09 2.77 -172.32 -0.48 -14.57 16 10 C 0.13 2.70 4.20 -3.71 -0.02 2.69 16 11 C -0.14 -2.26 5.55 -26.61 -0.15 -2.41 16 12 C 0.15 2.27 2.42 -67.89 -0.16 2.11 16 13 N -0.73 -8.29 5.08 -53.76 -0.27 -8.56 16 14 C 0.51 5.82 7.63 -10.98 -0.08 5.73 16 15 O -0.54 -8.19 14.50 5.56 0.08 -8.11 16 16 C -0.13 -0.95 5.20 -27.88 -0.14 -1.10 16 17 C -0.07 -0.57 2.45 -88.61 -0.22 -0.79 16 18 H 0.10 0.91 7.88 -51.93 -0.41 0.50 16 19 C -0.12 -0.90 5.76 -25.07 -0.14 -1.05 16 20 C -0.16 -1.22 6.50 -25.61 -0.17 -1.38 16 21 C 0.28 2.38 2.57 -25.61 -0.07 2.31 16 22 F -0.20 -2.06 17.04 2.25 0.04 -2.02 16 23 F -0.20 -1.96 17.04 2.25 0.04 -1.92 16 24 C -0.16 -1.05 5.85 -25.06 -0.15 -1.19 16 25 C -0.14 -2.31 5.65 -26.61 -0.15 -2.46 16 26 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.03 0.57 7.08 -51.93 -0.37 0.20 16 29 H 0.08 1.76 4.50 -51.93 -0.23 1.53 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.40 7.58 -51.93 -0.39 1.00 16 33 H 0.40 3.45 8.60 -40.82 -0.35 3.10 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.49 7.99 -51.93 -0.41 0.08 16 36 H 0.07 0.50 7.93 -51.93 -0.41 0.09 16 37 H 0.09 0.90 7.38 -51.93 -0.38 0.52 16 38 H 0.09 0.70 8.02 -51.93 -0.42 0.28 16 39 H 0.09 0.60 8.02 -51.93 -0.42 0.18 16 40 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 41 H 0.10 0.52 8.03 -51.93 -0.42 0.10 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -32.26 354.93 -7.52 -39.78 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.20 Total: 0.21 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -1.71 Total: -1.34 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.02 Total: -49.83 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.08 Total: -8.11 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.08 Total: -3.95 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.26 -7.52 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797865766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.790 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds