Wall clock time and date at job start Fri Apr 10 2020 23:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00248 * 2 1 4 4 H 1.48500 * 109.46898 * 272.90574 * 3 2 1 5 5 H 1.48498 * 109.46915 * 32.90544 * 3 2 1 6 6 H 1.48504 * 109.47004 * 152.90768 * 3 2 1 7 7 C 1.38818 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00127 * 339.36997 * 7 2 1 9 9 N 1.36934 * 119.99666 * 159.36548 * 7 2 1 10 10 C 1.46928 * 120.63220 * 332.62868 * 9 7 2 11 11 C 1.53190 * 108.77705 * 233.58767 * 10 9 7 12 12 C 1.53044 * 109.31340 * 305.36545 * 11 10 9 13 13 N 1.46500 * 109.46070 * 181.38313 * 12 11 10 14 14 C 1.34771 * 119.99946 * 154.97171 * 13 12 11 15 15 O 1.21280 * 120.00121 * 0.02562 * 14 13 12 16 16 C 1.50710 * 120.00037 * 179.72750 * 14 13 12 17 17 C 1.52996 * 109.46903 * 180.27712 * 16 14 13 18 18 H 1.08994 * 110.67696 * 51.76692 * 17 16 14 19 19 C 1.54890 * 110.75641 * 288.32366 * 17 16 14 20 20 C 1.54270 * 104.19908 * 203.74712 * 19 17 16 21 21 C 1.53876 * 106.59623 * 23.60905 * 20 19 17 22 22 F 1.39894 * 110.03340 * 240.71618 * 21 20 19 23 23 F 1.39901 * 110.07163 * 119.30803 * 21 20 19 24 24 C 1.54270 * 106.59916 * 0.02562 * 21 20 19 25 25 C 1.53037 * 109.52435 * 61.37258 * 12 11 10 26 26 C 1.46922 * 120.63222 * 152.61103 * 9 7 2 27 27 H 0.97004 * 120.00063 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.58630 * 113.80414 * 10 9 7 29 29 H 1.09001 * 109.58538 * 353.37349 * 10 9 7 30 30 H 1.09002 * 109.49774 * 185.41107 * 11 10 9 31 31 H 1.08998 * 109.49998 * 65.31674 * 11 10 9 32 32 H 1.08998 * 109.45615 * 301.35594 * 12 11 10 33 33 H 0.97008 * 120.00107 * 334.97643 * 13 12 11 34 34 H 1.09000 * 109.46926 * 300.27617 * 16 14 13 35 35 H 1.09000 * 109.46640 * 60.27474 * 16 14 13 36 36 H 1.09002 * 110.48713 * 322.42976 * 19 17 16 37 37 H 1.09001 * 110.48470 * 85.06706 * 19 17 16 38 38 H 1.09002 * 110.02733 * 264.32974 * 20 19 17 39 39 H 1.08994 * 110.07062 * 142.91806 * 20 19 17 40 40 H 1.08999 * 110.48650 * 217.71013 * 24 21 20 41 41 H 1.08998 * 110.60248 * 95.11997 * 24 21 20 42 42 H 1.09003 * 109.50126 * 58.58356 * 25 12 11 43 43 H 1.09001 * 109.49667 * 178.67799 * 25 12 11 44 44 H 1.08998 * 109.58757 * 246.20148 * 26 9 7 45 45 H 1.09003 * 109.58858 * 6.62446 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4362 2.0818 -1.3983 5 1 1.4798 2.6341 0.7606 6 1 3.5772 1.4231 0.6377 7 6 2.0102 -1.2022 0.0005 8 1 1.5221 -2.1073 0.3305 9 7 3.3136 -1.2404 -0.4174 10 6 3.8177 -0.2594 -1.3881 11 6 4.4629 -1.0095 -2.5576 12 6 5.5295 -1.9657 -2.0188 13 7 6.1716 -2.6607 -3.1372 14 6 7.4222 -3.1445 -3.0012 15 8 8.0158 -3.0048 -1.9529 16 6 8.0805 -3.8649 -4.1497 17 6 9.4824 -4.3145 -3.7333 18 1 9.4463 -4.8674 -2.7947 19 6 10.4381 -3.1006 -3.6236 20 6 11.8437 -3.7072 -3.8144 21 6 11.6535 -5.0210 -4.5925 22 9 12.1175 -6.0997 -3.8323 23 9 12.3408 -4.9620 -5.8096 24 6 10.1390 -5.1666 -4.8480 25 6 4.8752 -2.9907 -1.0897 26 6 4.2349 -2.2630 0.0966 27 1 -0.4850 0.8401 -0.0004 28 1 4.5600 0.3797 -0.9098 29 1 2.9911 0.3488 -1.7556 30 1 4.9256 -0.2942 -3.2376 31 1 3.7005 -1.5778 -3.0902 32 1 6.2784 -1.3994 -1.4650 33 1 5.6968 -2.7727 -3.9756 34 1 7.4850 -4.7366 -4.4210 35 1 8.1533 -3.1939 -5.0056 36 1 10.2257 -2.3755 -4.4093 37 1 10.3533 -2.6358 -2.6413 38 1 12.2975 -3.9102 -2.8443 39 1 12.4721 -3.0231 -4.3846 40 1 9.8357 -6.2097 -4.7590 41 1 9.8767 -4.7766 -5.8315 42 1 4.1088 -3.5402 -1.6363 43 1 5.6313 -3.6858 -0.7247 44 1 5.0112 -1.7874 0.6960 45 1 3.6838 -2.9769 0.7088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797865766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:21:56 Heat of formation + Delta-G solvation = -155.399465 kcal Electronic energy + Delta-G solvation = -26866.274179 eV Core-core repulsion = 22746.104965 eV Total energy + Delta-G solvation = -4120.169214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -49.91496 -48.00298 -41.07179 -39.39918 -38.16393 -35.97138 -34.07748 -32.57830 -31.97241 -31.36903 -29.60894 -27.31946 -26.11193 -24.49888 -23.51676 -22.02952 -21.77232 -21.24118 -20.82404 -18.97110 -18.57480 -17.93061 -17.73463 -17.47211 -16.88723 -16.63677 -16.14405 -15.94238 -15.56052 -15.34503 -15.27395 -14.90244 -14.77039 -14.67456 -14.43878 -14.34558 -14.23729 -14.05198 -13.80443 -13.48597 -13.11050 -12.85994 -12.59423 -12.53948 -12.51543 -12.32685 -12.27491 -12.02941 -11.84130 -11.76870 -11.64119 -11.58250 -11.54990 -11.34161 -10.83783 -10.59617 -9.94624 -8.96829 -8.16636 -5.48977 1.28916 1.42735 1.51261 1.78113 2.24149 2.41073 2.80846 3.00713 3.05677 3.20615 3.32447 3.41181 3.76941 3.89870 3.98087 4.03188 4.05386 4.24864 4.26631 4.32787 4.36939 4.42985 4.49021 4.52896 4.64205 4.68153 4.72602 4.79386 4.85913 4.91298 4.94162 4.96119 5.03404 5.06580 5.08288 5.17704 5.25032 5.36934 5.43221 5.60888 5.86460 6.12382 6.70845 6.90534 7.40692 7.61078 8.01444 9.03187 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.039092 B = 0.002343 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.081299 B =11945.952097 C =12095.464697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.034 4.034 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.312 1.312 6 H -0.266 1.266 7 C -0.249 4.249 8 H 0.052 0.948 9 N -0.620 5.620 10 C 0.120 3.880 11 C -0.127 4.127 12 C 0.160 3.840 13 N -0.715 5.715 14 C 0.507 3.493 15 O -0.581 6.581 16 C -0.124 4.124 17 C -0.073 4.073 18 H 0.074 0.926 19 C -0.113 4.113 20 C -0.162 4.162 21 C 0.270 3.730 22 F -0.214 7.214 23 F -0.209 7.209 24 C -0.148 4.148 25 C -0.127 4.127 26 C 0.146 3.854 27 H 0.262 0.738 28 H 0.030 0.970 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.415 0.585 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.027 0.973 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.732 -8.321 -15.531 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.229 4.229 3 Si 0.774 3.226 4 H -0.194 1.194 5 H -0.241 1.241 6 H -0.191 1.191 7 C -0.379 4.379 8 H 0.070 0.930 9 N -0.344 5.344 10 C -0.005 4.005 11 C -0.166 4.166 12 C 0.055 3.945 13 N -0.367 5.367 14 C 0.295 3.705 15 O -0.460 6.460 16 C -0.163 4.163 17 C -0.092 4.092 18 H 0.092 0.908 19 C -0.150 4.150 20 C -0.200 4.200 21 C 0.234 3.766 22 F -0.195 7.195 23 F -0.190 7.190 24 C -0.186 4.186 25 C -0.167 4.167 26 C 0.020 3.980 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.251 0.749 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.141 0.859 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 23.066 -8.178 -14.795 28.598 hybrid contribution -0.241 0.637 0.294 0.742 sum 22.825 -7.541 -14.501 28.074 Atomic orbital electron populations 1.69960 1.07373 1.27249 1.55610 1.25896 0.95832 1.00865 1.00286 0.85937 0.78515 0.80253 0.77885 1.19366 1.24127 1.19064 1.18860 0.86614 0.93599 1.38791 0.93010 1.44514 1.07729 1.34586 1.47600 1.21384 0.96856 0.92071 0.90234 1.22146 0.97646 0.98826 0.98014 1.20597 0.93600 0.92560 0.87731 1.46077 1.15816 1.57972 1.16823 1.21314 0.81015 0.78234 0.89906 1.90699 1.64734 1.59225 1.31385 1.21711 0.95447 1.02548 0.96605 1.21768 0.93522 0.96026 0.97924 0.90777 1.22394 0.91669 0.97597 1.03382 1.23180 1.00736 0.94295 1.01772 1.22193 0.91771 0.85945 0.76668 1.92990 1.90830 1.59250 1.76442 1.92992 1.82521 1.96767 1.46748 1.23408 0.89123 1.03745 1.02318 1.22184 0.99199 0.98015 0.97309 1.21013 0.91740 0.90669 0.94535 0.92900 0.95176 0.92452 0.89163 0.90938 0.91503 0.74875 0.85967 0.85535 0.89265 0.91276 0.89308 0.87811 0.88089 0.85922 0.91940 0.91724 0.95485 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.41 13.97 21.65 0.30 -59.10 16 2 C -0.03 -1.96 5.23 84.86 0.44 -1.52 16 3 Si 0.95 45.83 24.35 68.60 1.67 47.50 16 4 H -0.27 -11.93 6.62 99.48 0.66 -11.27 16 5 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 6 H -0.27 -12.55 6.64 99.48 0.66 -11.89 16 7 C -0.25 -13.99 10.04 84.04 0.84 -13.14 16 8 H 0.05 3.19 8.05 -2.91 -0.02 3.16 16 9 N -0.62 -28.63 2.77 -699.11 -1.94 -30.57 16 10 C 0.12 4.81 4.20 86.36 0.36 5.17 16 11 C -0.13 -3.70 5.55 30.67 0.17 -3.53 16 12 C 0.16 4.44 2.42 45.02 0.11 4.55 16 13 N -0.72 -13.77 5.08 -442.40 -2.25 -16.01 16 14 C 0.51 10.01 7.63 87.66 0.67 10.68 16 15 O -0.58 -16.75 14.50 -3.03 -0.04 -16.79 16 16 C -0.12 -1.22 5.20 29.85 0.16 -1.07 16 17 C -0.07 -0.94 2.45 -9.49 -0.02 -0.96 16 18 H 0.07 1.31 7.88 -2.39 -0.02 1.29 16 19 C -0.11 -1.55 5.76 31.67 0.18 -1.37 16 20 C -0.16 -2.17 6.50 31.32 0.20 -1.97 16 21 C 0.27 4.10 2.57 31.32 0.08 4.18 16 22 F -0.21 -4.25 17.04 44.97 0.77 -3.49 16 23 F -0.21 -3.64 17.04 44.97 0.77 -2.88 16 24 C -0.15 -1.49 5.85 31.68 0.19 -1.30 16 25 C -0.13 -3.99 5.65 30.67 0.17 -3.82 16 26 C 0.15 5.71 6.52 86.36 0.56 6.27 16 27 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.03 1.20 7.08 -2.39 -0.02 1.18 16 29 H 0.06 2.53 4.50 -2.39 -0.01 2.52 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16 33 H 0.41 5.29 8.60 -92.70 -0.80 4.49 16 34 H 0.12 0.68 8.14 -2.39 -0.02 0.67 16 35 H 0.13 0.56 7.99 -2.39 -0.02 0.54 16 36 H 0.09 0.93 7.93 -2.39 -0.02 0.91 16 37 H 0.07 1.30 7.38 -2.39 -0.02 1.28 16 38 H 0.09 1.28 8.02 -2.39 -0.02 1.26 16 39 H 0.10 1.15 8.02 -2.39 -0.02 1.13 16 40 H 0.10 0.91 8.11 -2.39 -0.02 0.89 16 41 H 0.12 0.70 8.03 -2.39 -0.02 0.69 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 2.26 7.93 -2.39 -0.02 2.24 16 Total: -1.00 -72.44 354.93 3.50 -68.94 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.10 Total: 10.22 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 4.12 Total: 2.18 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.88 Total: -105.69 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.04 Total: -16.79 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 1.53 Total: -6.36 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.67 Total: 47.50 kcal Total: -72.44 3.50 -68.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797865766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.458 kcal (2) G-P(sol) polarization free energy of solvation -72.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds