Wall clock time and date at job start Fri Apr 10 2020 23:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46761 * 2 1 4 4 O 1.42900 * 109.46803 * 120.00249 * 2 1 3 5 5 C 1.42902 * 113.99585 * 269.99889 * 4 2 1 6 6 C 1.53006 * 109.47136 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.47970 * 54.97438 * 6 5 4 8 8 C 1.53083 * 109.48351 * 175.00136 * 6 5 4 9 9 C 1.53181 * 109.16492 * 177.59193 * 8 6 5 10 10 C 1.53168 * 109.03511 * 303.01917 * 9 8 6 11 11 C 1.53093 * 109.16539 * 56.98056 * 10 9 8 12 12 O 1.42901 * 109.47835 * 294.94354 * 6 5 4 13 13 C 1.50702 * 109.47126 * 239.99823 * 2 1 3 14 14 O 1.20823 * 120.00162 * 245.00127 * 13 2 1 15 15 O 1.34228 * 119.99528 * 65.00264 * 13 2 1 16 16 C 1.45206 * 116.99484 * 179.97438 * 15 13 2 17 17 C 1.53006 * 109.46686 * 179.97438 * 16 15 13 18 18 O 1.42901 * 109.46804 * 65.00316 * 17 16 15 19 19 C 1.42899 * 113.99607 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46876 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48504 * 109.47196 * 60.00645 * 24 22 20 26 26 H 1.48504 * 109.46887 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47679 * 300.00280 * 24 22 20 28 28 H 1.09004 * 109.47300 * 59.99966 * 1 2 3 29 29 H 1.09009 * 109.46976 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47535 * 299.99979 * 1 2 3 31 31 H 1.08995 * 109.47031 * 299.99893 * 5 4 2 32 32 H 1.08999 * 109.47078 * 60.00335 * 5 4 2 33 33 H 1.09002 * 109.52037 * 297.49800 * 8 6 5 34 34 H 1.09004 * 109.52466 * 57.61892 * 8 6 5 35 35 H 1.09002 * 109.54213 * 62.88770 * 9 8 6 36 36 H 1.08996 * 109.54378 * 183.06261 * 9 8 6 37 37 H 1.08998 * 109.52519 * 176.88646 * 10 9 8 38 38 H 1.09004 * 109.52463 * 297.01280 * 10 9 8 39 39 H 1.08991 * 109.48298 * 62.37067 * 11 10 9 40 40 H 1.09003 * 109.48079 * 182.41236 * 11 10 9 41 41 H 1.08997 * 109.47067 * 60.00182 * 16 15 13 42 42 H 1.08995 * 109.47255 * 299.99859 * 16 15 13 43 43 H 1.08995 * 109.47721 * 305.00019 * 17 16 15 44 44 H 1.09001 * 109.46499 * 184.99895 * 17 16 15 45 45 H 1.09004 * 109.47206 * 60.00168 * 19 18 17 46 46 H 1.08994 * 109.47548 * 299.99825 * 19 18 17 47 47 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7089 -0.6406 3.4789 7 1 3.6077 -1.1829 3.1853 8 6 3.0349 0.2932 4.6473 9 6 3.4862 -0.5431 5.8487 10 6 2.3858 -1.5494 6.1985 11 6 2.0848 -2.4122 4.9702 12 8 1.7010 -1.5704 3.8810 13 6 2.0323 -0.7105 -1.2305 14 8 2.6506 -1.7428 -1.1219 15 8 1.7929 -0.1962 -2.4470 16 6 2.3070 -0.9339 -3.5872 17 6 1.9380 -0.1997 -4.8779 18 8 2.6037 1.0642 -4.9139 19 6 2.3259 1.8342 -6.0852 20 6 3.0753 3.1399 -6.0174 21 1 3.7014 3.3596 -5.1652 22 6 2.9666 4.0515 -7.0462 23 7 2.2044 3.7838 -8.0840 24 14 3.9015 5.6666 -6.9656 25 1 5.3585 5.3916 -6.8826 26 1 3.6166 6.4648 -8.1851 27 1 3.4722 6.4279 -5.7650 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.9319 0.9512 2.0450 32 1 1.2537 0.6546 2.5588 33 1 3.8346 0.9746 4.3568 34 1 2.1470 0.8665 4.9142 35 1 4.4025 -1.0773 5.5975 36 1 3.6679 0.1115 6.7010 37 1 2.7211 -2.1859 7.0173 38 1 1.4848 -1.0143 6.4985 39 1 2.9753 -2.9778 4.6961 40 1 1.2725 -3.1017 5.2004 41 1 1.8709 -1.9327 -3.6004 42 1 3.3915 -1.0118 -3.5105 43 1 0.8598 -0.0436 -4.9116 44 1 2.2456 -0.7970 -5.7362 45 1 1.2557 2.0326 -6.1443 46 1 2.6419 1.2791 -6.9684 47 1 2.1276 4.4253 -8.8076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815197096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:22:43 Heat of formation + Delta-G solvation = -239.696334 kcal Electronic energy + Delta-G solvation = -26314.721124 eV Core-core repulsion = 22269.691288 eV Total energy + Delta-G solvation = -4045.029836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.181 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.46857 -39.80301 -38.10770 -36.91751 -35.91066 -33.99583 -32.96762 -32.75418 -31.38271 -29.91951 -27.38346 -26.95913 -25.02571 -24.35122 -22.59016 -22.43866 -22.09385 -20.88496 -20.51935 -17.82130 -17.21721 -16.85799 -16.65452 -16.42046 -16.34814 -16.04163 -15.46486 -15.11475 -14.95711 -14.73494 -14.53525 -14.39793 -14.10866 -13.69998 -13.22198 -13.06527 -12.98527 -12.79666 -12.73668 -12.30597 -12.09633 -11.95429 -11.75304 -11.61221 -11.46005 -11.39962 -11.05688 -10.93685 -10.84660 -10.75241 -10.69131 -10.36887 -10.30556 -10.07201 -9.83293 -9.76473 -9.15116 -8.88011 -8.22017 -6.12705 -4.14472 2.28963 2.36837 3.31161 3.33836 3.37653 3.39263 3.58631 4.31425 4.34754 4.40669 4.45798 4.58980 4.61755 4.71924 4.74914 4.79390 4.80090 4.94276 5.00491 5.07020 5.17794 5.23680 5.24468 5.27810 5.34209 5.41288 5.46464 5.49015 5.52863 5.53689 5.59998 5.66719 5.85132 5.86828 5.91613 5.97319 6.09110 6.59574 6.77774 6.94053 7.04842 7.39125 7.76722 7.90042 8.11706 8.51677 8.97619 9.50102 10.98722 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.019345 B = 0.002082 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.075970 B =13442.554738 C =14396.572420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 H 0.101 0.899 4 O -0.352 6.352 5 C 0.067 3.933 6 C 0.094 3.906 7 H 0.069 0.931 8 C -0.149 4.149 9 C -0.121 4.121 10 C -0.158 4.158 11 C 0.060 3.940 12 O -0.369 6.369 13 C 0.461 3.539 14 O -0.496 6.496 15 O -0.338 6.338 16 C 0.075 3.925 17 C 0.062 3.938 18 O -0.391 6.391 19 C 0.194 3.806 20 C -0.516 4.516 21 H 0.066 0.934 22 C 0.056 3.944 23 N -0.898 5.898 24 Si 0.909 3.091 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.275 1.275 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.008 0.992 46 H 0.006 0.994 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.134 -9.776 26.698 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.039 3.961 3 H 0.119 0.881 4 O -0.271 6.271 5 C -0.009 4.009 6 C 0.036 3.964 7 H 0.087 0.913 8 C -0.187 4.187 9 C -0.159 4.159 10 C -0.196 4.196 11 C -0.017 4.017 12 O -0.288 6.288 13 C 0.302 3.698 14 O -0.383 6.383 15 O -0.255 6.255 16 C 0.002 3.998 17 C -0.016 4.016 18 O -0.311 6.311 19 C 0.120 3.880 20 C -0.554 4.554 21 H 0.084 0.916 22 C -0.145 4.145 23 N -0.537 5.537 24 Si 0.736 3.264 25 H -0.200 1.200 26 H -0.212 1.212 27 H -0.200 1.200 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.025 0.975 46 H 0.024 0.976 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.022 -10.157 26.562 28.510 hybrid contribution 0.572 0.889 -0.225 1.081 sum -1.450 -9.268 26.337 27.958 Atomic orbital electron populations 1.22201 0.92364 1.03956 1.03971 1.21381 0.95712 0.96063 0.82955 0.88132 1.88051 1.86669 1.33933 1.18456 1.22669 1.00818 0.92386 0.85060 1.22049 0.91896 0.90448 0.92028 0.91332 1.22144 1.02552 0.98547 0.95455 1.21564 0.98393 0.97993 0.97947 1.22216 0.99708 0.98904 0.98735 1.22571 1.00854 0.92271 0.86003 1.88012 1.39873 1.50062 1.50841 1.23293 0.77310 0.83955 0.85242 1.90655 1.37094 1.23336 1.87213 1.86567 1.71732 1.52751 1.14425 1.23242 1.00128 0.94073 0.82393 1.22326 0.97417 0.88346 0.93473 1.87915 1.69622 1.27748 1.45825 1.20236 0.95931 0.90091 0.81735 1.21007 1.28279 1.00565 1.05518 0.91583 1.24954 0.95691 0.98922 0.94961 1.69953 1.38689 1.36421 1.08670 0.86378 0.80141 0.82427 0.77415 1.20023 1.21152 1.19996 0.89748 0.91157 0.90844 0.91265 0.91845 0.90414 0.90654 0.91626 0.91196 0.90883 0.91005 0.93139 0.88821 0.90342 0.90444 0.93121 0.91871 0.97463 0.97591 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.50 37.16 0.35 -1.38 16 2 C 0.10 1.22 3.24 -27.88 -0.09 1.13 16 3 H 0.10 1.06 7.79 -51.93 -0.40 0.66 16 4 O -0.35 -4.67 9.49 -59.70 -0.57 -5.24 16 5 C 0.07 0.64 5.41 37.16 0.20 0.85 16 6 C 0.09 0.87 2.93 -26.69 -0.08 0.79 16 7 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 8 C -0.15 -0.99 5.42 -26.59 -0.14 -1.13 16 9 C -0.12 -0.71 6.03 -26.55 -0.16 -0.87 16 10 C -0.16 -0.94 6.14 -26.60 -0.16 -1.10 16 11 C 0.06 0.46 6.84 37.21 0.25 0.72 16 12 O -0.37 -3.97 10.37 -40.00 -0.41 -4.39 16 13 C 0.46 7.36 7.29 36.01 0.26 7.63 16 14 O -0.50 -9.21 16.25 -25.46 -0.41 -9.63 16 15 O -0.34 -5.75 10.19 -42.02 -0.43 -6.17 16 16 C 0.08 1.22 5.85 37.16 0.22 1.44 16 17 C 0.06 1.14 6.33 37.16 0.24 1.37 16 18 O -0.39 -9.47 10.30 -38.80 -0.40 -9.87 16 19 C 0.19 5.30 5.69 36.01 0.20 5.50 16 20 C -0.52 -15.16 9.43 -34.44 -0.32 -15.48 16 21 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 24 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 31 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 42 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -34.85 392.42 -8.30 -43.15 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -8.37 Total: -5.50 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 0.67 Total: 0.98 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -2.22 Total: -35.30 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.85 -8.30 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815197096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.550 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds