Wall clock time and date at job start Fri Apr 10 2020 23:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47219 * 2 1 4 4 O 1.42894 * 109.47578 * 239.99419 * 2 1 3 5 5 C 1.42901 * 113.99908 * 90.00088 * 4 2 1 6 6 C 1.52998 * 109.47063 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.49173 * 305.02703 * 6 5 4 8 8 C 1.53097 * 109.47989 * 185.00354 * 6 5 4 9 9 C 1.53174 * 109.16185 * 182.40944 * 8 6 5 10 10 C 1.53176 * 109.04061 * 56.97999 * 9 8 6 11 11 C 1.53091 * 109.21206 * 302.98570 * 10 9 8 12 12 O 1.42902 * 109.48518 * 65.05862 * 6 5 4 13 13 C 1.50703 * 109.46785 * 119.99832 * 2 1 3 14 14 O 1.20820 * 120.00074 * 119.99967 * 13 2 1 15 15 O 1.34237 * 119.99986 * 299.99639 * 13 2 1 16 16 C 1.45195 * 117.00208 * 179.97438 * 15 13 2 17 17 C 1.53000 * 109.47289 * 180.02562 * 16 15 13 18 18 O 1.42901 * 109.46933 * 65.00299 * 17 16 15 19 19 C 1.42894 * 113.99853 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47111 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99930 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00047 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99798 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00068 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47086 * 89.99925 * 24 22 20 26 26 H 1.48506 * 109.47329 * 209.99958 * 24 22 20 27 27 H 1.48505 * 109.47103 * 329.99971 * 24 22 20 28 28 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47297 * 300.00737 * 1 2 3 30 30 H 1.09001 * 109.46590 * 60.00243 * 1 2 3 31 31 H 1.09001 * 109.47205 * 60.00081 * 5 4 2 32 32 H 1.09003 * 109.47306 * 300.00451 * 5 4 2 33 33 H 1.08995 * 109.52587 * 62.49797 * 8 6 5 34 34 H 1.09004 * 109.57034 * 302.34297 * 8 6 5 35 35 H 1.08995 * 109.54500 * 297.10556 * 9 8 6 36 36 H 1.08999 * 109.54245 * 176.84623 * 9 8 6 37 37 H 1.09002 * 109.52410 * 62.92413 * 10 9 8 38 38 H 1.09004 * 109.52533 * 183.05059 * 10 9 8 39 39 H 1.09007 * 109.48127 * 177.62276 * 11 10 9 40 40 H 1.09000 * 109.48171 * 297.66002 * 11 10 9 41 41 H 1.09003 * 109.47138 * 300.00660 * 16 15 13 42 42 H 1.09003 * 109.47057 * 60.00369 * 16 15 13 43 43 H 1.09000 * 109.47198 * 185.00125 * 17 16 15 44 44 H 1.08994 * 109.46889 * 305.00437 * 17 16 15 45 45 H 1.08999 * 109.47042 * 299.99998 * 19 18 17 46 46 H 1.09000 * 109.47141 * 59.99891 * 19 18 17 47 47 H 0.96997 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 2.2002 0.1828 -2.2940 6 6 2.7081 -0.6410 -3.4790 7 1 3.6066 -1.1840 -3.1859 8 6 3.0344 0.2928 -4.6475 9 6 3.4846 -0.5438 -5.8491 10 6 2.3833 -1.5494 -6.1986 11 6 2.0819 -2.4133 -4.9711 12 8 1.6995 -1.5702 -3.8808 13 6 2.0322 -0.7104 1.2305 14 8 2.7268 -1.6928 1.1198 15 8 1.7080 -0.2517 2.4497 16 6 2.2265 -0.9861 3.5898 17 6 1.7545 -0.3195 4.8835 18 8 0.3327 -0.4236 4.9817 19 6 -0.2136 0.1715 6.1604 20 6 -1.7112 0.0033 6.1602 21 1 -2.1971 -0.5073 5.3420 22 6 -2.4610 0.5014 7.2046 23 7 -3.7679 0.3542 7.2047 24 14 -1.6204 1.3840 8.6202 25 1 -1.5337 2.8352 8.3171 26 1 -2.4061 1.1843 9.8645 27 1 -0.2533 0.8342 8.8044 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 2.9320 0.9512 -2.0450 32 1 1.2539 0.6546 -2.5588 33 1 3.8345 0.9736 -4.3573 34 1 2.1470 0.8666 -4.9151 35 1 4.4006 -1.0786 -5.5983 36 1 3.6648 0.1106 -6.7019 37 1 1.4822 -1.0137 -6.4972 38 1 2.7175 -2.1854 -7.0184 39 1 1.2694 -3.1023 -5.2022 40 1 2.9722 -2.9794 -4.6976 41 1 1.8623 -2.0130 3.5567 42 1 3.3161 -0.9859 3.5571 43 1 2.2151 -0.8164 5.7373 44 1 2.0422 0.7318 4.8763 45 1 0.2062 -0.3149 7.0410 46 1 0.0333 1.2330 6.1794 47 1 -4.2954 0.7050 7.9392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815197099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:22:53 Heat of formation + Delta-G solvation = -233.949227 kcal Electronic energy + Delta-G solvation = -26361.648334 eV Core-core repulsion = 22316.867711 eV Total energy + Delta-G solvation = -4044.780623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.181 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.49880 -39.80244 -38.12842 -37.08003 -35.99624 -33.99733 -32.95752 -32.68496 -31.38657 -30.09906 -27.60445 -27.38557 -25.01264 -24.35863 -22.59239 -22.32588 -21.86934 -20.91783 -20.54155 -17.81893 -17.27254 -16.94054 -16.78332 -16.72242 -16.34320 -16.08619 -15.41553 -15.19745 -14.94390 -14.82778 -14.69726 -14.40747 -14.09616 -13.69678 -13.20827 -13.07533 -12.94028 -12.74995 -12.58118 -12.51297 -12.31512 -12.05164 -11.76512 -11.70858 -11.60177 -11.43142 -11.16642 -11.05637 -10.87037 -10.69374 -10.66428 -10.47394 -10.30807 -9.88248 -9.84077 -9.76803 -9.21378 -8.91623 -8.51634 -6.12671 -4.12013 2.22153 2.37815 3.23416 3.30506 3.31264 3.38686 3.56914 4.33275 4.33805 4.39279 4.44816 4.46278 4.58681 4.60940 4.73746 4.74950 4.82089 4.92792 4.99220 5.03802 5.15135 5.17268 5.18306 5.27191 5.33459 5.38635 5.41374 5.48033 5.57190 5.61989 5.64926 5.68202 5.69730 5.78275 5.84368 5.95340 6.16981 6.54209 6.54555 6.77711 6.94424 6.95678 7.56489 7.85764 7.95319 8.62596 8.98927 9.45966 11.00277 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.028494 B = 0.001982 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.422090 B =14122.542363 C =14546.518992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.100 3.900 3 H 0.098 0.902 4 O -0.352 6.352 5 C 0.068 3.932 6 C 0.094 3.906 7 H 0.068 0.932 8 C -0.149 4.149 9 C -0.121 4.121 10 C -0.158 4.158 11 C 0.060 3.940 12 O -0.368 6.368 13 C 0.461 3.539 14 O -0.496 6.496 15 O -0.339 6.339 16 C 0.075 3.925 17 C 0.058 3.942 18 O -0.375 6.375 19 C 0.168 3.832 20 C -0.519 4.519 21 H 0.083 0.917 22 C 0.072 3.928 23 N -0.894 5.894 24 Si 0.877 3.123 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.267 1.267 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.004 0.996 46 H 0.001 0.999 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.778 1.315 -24.945 30.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.041 3.959 3 H 0.115 0.885 4 O -0.271 6.271 5 C -0.009 4.009 6 C 0.036 3.964 7 H 0.086 0.914 8 C -0.187 4.187 9 C -0.159 4.159 10 C -0.196 4.196 11 C -0.017 4.017 12 O -0.287 6.287 13 C 0.302 3.698 14 O -0.383 6.383 15 O -0.255 6.255 16 C 0.001 3.999 17 C -0.020 4.020 18 O -0.294 6.294 19 C 0.093 3.907 20 C -0.557 4.557 21 H 0.101 0.899 22 C -0.130 4.130 23 N -0.532 5.532 24 Si 0.703 3.297 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.191 1.191 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.022 0.978 46 H 0.018 0.982 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.554 0.746 -24.874 29.889 hybrid contribution 0.815 0.770 0.906 1.441 sum 17.369 1.516 -23.969 29.639 Atomic orbital electron populations 1.22228 0.91897 1.04494 1.04124 1.21387 0.96096 0.95517 0.82860 0.88463 1.88061 1.86649 1.33937 1.18447 1.22652 1.00760 0.92330 0.85135 1.22037 0.91902 0.90476 0.92003 0.91409 1.22145 1.02490 0.98535 0.95505 1.21563 0.98398 0.97997 0.97911 1.22221 0.99699 0.98905 0.98767 1.22602 1.00916 0.92260 0.85936 1.88049 1.39748 1.50050 1.50851 1.23325 0.77846 0.83388 0.85198 1.90656 1.35064 1.25277 1.87277 1.86559 1.69561 1.55134 1.14241 1.23200 0.97905 0.96542 0.82228 1.22399 0.86056 0.99677 0.93830 1.87982 1.16471 1.79838 1.45122 1.20636 0.95526 0.91696 0.82838 1.20876 0.88470 1.37896 1.08483 0.89894 1.24774 0.94749 0.95710 0.97775 1.69875 1.04789 1.46012 1.32569 0.86843 0.80008 0.80541 0.82283 1.19911 1.20768 1.19134 0.90898 0.89253 0.90976 0.91502 0.91776 0.90543 0.90628 0.91660 0.91219 0.90963 0.90864 0.88712 0.93143 0.90221 0.90265 0.91747 0.93023 0.97849 0.98172 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.46 37.16 0.35 -1.68 16 2 C 0.10 1.24 3.24 -27.88 -0.09 1.15 16 3 H 0.10 0.90 7.79 -51.93 -0.40 0.50 16 4 O -0.35 -4.64 9.49 -59.73 -0.57 -5.21 16 5 C 0.07 0.63 5.41 37.16 0.20 0.83 16 6 C 0.09 0.84 2.93 -26.68 -0.08 0.77 16 7 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 8 C -0.15 -0.93 5.42 -26.59 -0.14 -1.07 16 9 C -0.12 -0.67 6.03 -26.55 -0.16 -0.83 16 10 C -0.16 -0.94 6.13 -26.59 -0.16 -1.11 16 11 C 0.06 0.47 6.86 37.20 0.26 0.73 16 12 O -0.37 -4.05 10.37 -40.00 -0.41 -4.46 16 13 C 0.46 7.25 7.33 36.01 0.26 7.51 16 14 O -0.50 -9.07 16.25 -25.47 -0.41 -9.49 16 15 O -0.34 -5.58 10.09 -42.04 -0.42 -6.01 16 16 C 0.07 1.16 5.84 37.16 0.22 1.38 16 17 C 0.06 0.99 6.33 37.16 0.24 1.23 16 18 O -0.37 -8.72 10.30 -38.80 -0.40 -9.12 16 19 C 0.17 4.23 4.76 36.01 0.17 4.41 16 20 C -0.52 -15.43 9.99 -34.44 -0.34 -15.77 16 21 H 0.08 2.70 8.06 -52.49 -0.42 2.28 16 22 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 23 N -0.89 -27.51 13.96 55.43 0.77 -26.73 16 24 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 1.13 8.11 -51.93 -0.42 0.70 16 30 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 31 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 42 H 0.08 1.02 8.13 -51.93 -0.42 0.59 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 46 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 388.70 15.07 5.86 5.86 Total: -1.00 -35.57 388.70 -7.98 -43.55 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -8.34 Total: -4.46 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 0.62 Total: -0.45 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.73 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -2.22 Total: -34.28 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.57 -7.98 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815197099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.402 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds