Wall clock time and date at job start Fri Apr 10 2020 23:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47219 * 2 1 4 4 O 1.42894 * 109.47578 * 239.99419 * 2 1 3 5 5 C 1.42901 * 113.99908 * 90.00088 * 4 2 1 6 6 C 1.52998 * 109.47063 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.49173 * 305.02703 * 6 5 4 8 8 C 1.53097 * 109.47989 * 185.00354 * 6 5 4 9 9 C 1.53174 * 109.16185 * 182.40944 * 8 6 5 10 10 C 1.53176 * 109.04061 * 56.97999 * 9 8 6 11 11 C 1.53091 * 109.21206 * 302.98570 * 10 9 8 12 12 O 1.42902 * 109.48518 * 65.05862 * 6 5 4 13 13 C 1.50703 * 109.46785 * 119.99832 * 2 1 3 14 14 O 1.20820 * 120.00074 * 119.99967 * 13 2 1 15 15 O 1.34237 * 119.99986 * 299.99639 * 13 2 1 16 16 C 1.45195 * 117.00208 * 179.97438 * 15 13 2 17 17 C 1.53000 * 109.47289 * 180.02562 * 16 15 13 18 18 O 1.42901 * 109.46933 * 65.00299 * 17 16 15 19 19 C 1.42894 * 113.99853 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47111 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99930 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00047 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99798 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00068 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47086 * 89.99925 * 24 22 20 26 26 H 1.48506 * 109.47329 * 209.99958 * 24 22 20 27 27 H 1.48505 * 109.47103 * 329.99971 * 24 22 20 28 28 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47297 * 300.00737 * 1 2 3 30 30 H 1.09001 * 109.46590 * 60.00243 * 1 2 3 31 31 H 1.09001 * 109.47205 * 60.00081 * 5 4 2 32 32 H 1.09003 * 109.47306 * 300.00451 * 5 4 2 33 33 H 1.08995 * 109.52587 * 62.49797 * 8 6 5 34 34 H 1.09004 * 109.57034 * 302.34297 * 8 6 5 35 35 H 1.08995 * 109.54500 * 297.10556 * 9 8 6 36 36 H 1.08999 * 109.54245 * 176.84623 * 9 8 6 37 37 H 1.09002 * 109.52410 * 62.92413 * 10 9 8 38 38 H 1.09004 * 109.52533 * 183.05059 * 10 9 8 39 39 H 1.09007 * 109.48127 * 177.62276 * 11 10 9 40 40 H 1.09000 * 109.48171 * 297.66002 * 11 10 9 41 41 H 1.09003 * 109.47138 * 300.00660 * 16 15 13 42 42 H 1.09003 * 109.47057 * 60.00369 * 16 15 13 43 43 H 1.09000 * 109.47198 * 185.00125 * 17 16 15 44 44 H 1.08994 * 109.46889 * 305.00437 * 17 16 15 45 45 H 1.08999 * 109.47042 * 299.99998 * 19 18 17 46 46 H 1.09000 * 109.47141 * 59.99891 * 19 18 17 47 47 H 0.96997 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 2.2002 0.1828 -2.2940 6 6 2.7081 -0.6410 -3.4790 7 1 3.6066 -1.1840 -3.1859 8 6 3.0344 0.2928 -4.6475 9 6 3.4846 -0.5438 -5.8491 10 6 2.3833 -1.5494 -6.1986 11 6 2.0819 -2.4133 -4.9711 12 8 1.6995 -1.5702 -3.8808 13 6 2.0322 -0.7104 1.2305 14 8 2.7268 -1.6928 1.1198 15 8 1.7080 -0.2517 2.4497 16 6 2.2265 -0.9861 3.5898 17 6 1.7545 -0.3195 4.8835 18 8 0.3327 -0.4236 4.9817 19 6 -0.2136 0.1715 6.1604 20 6 -1.7112 0.0033 6.1602 21 1 -2.1971 -0.5073 5.3420 22 6 -2.4610 0.5014 7.2046 23 7 -3.7679 0.3542 7.2047 24 14 -1.6204 1.3840 8.6202 25 1 -1.5337 2.8352 8.3171 26 1 -2.4061 1.1843 9.8645 27 1 -0.2533 0.8342 8.8044 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 2.9320 0.9512 -2.0450 32 1 1.2539 0.6546 -2.5588 33 1 3.8345 0.9736 -4.3573 34 1 2.1470 0.8666 -4.9151 35 1 4.4006 -1.0786 -5.5983 36 1 3.6648 0.1106 -6.7019 37 1 1.4822 -1.0137 -6.4972 38 1 2.7175 -2.1854 -7.0184 39 1 1.2694 -3.1023 -5.2022 40 1 2.9722 -2.9794 -4.6976 41 1 1.8623 -2.0130 3.5567 42 1 3.3161 -0.9859 3.5571 43 1 2.2151 -0.8164 5.7373 44 1 2.0422 0.7318 4.8763 45 1 0.2062 -0.3149 7.0410 46 1 0.0333 1.2330 6.1794 47 1 -4.2954 0.7050 7.9392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815197099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:22:52 Heat of formation + Delta-G solvation = -257.602890 kcal Electronic energy + Delta-G solvation = -26362.674034 eV Core-core repulsion = 22316.867711 eV Total energy + Delta-G solvation = -4045.806323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.70383 -40.48494 -39.15682 -38.60261 -37.36457 -34.88702 -34.55931 -33.71041 -32.34386 -31.50652 -29.55696 -28.03737 -26.03272 -25.00329 -24.03978 -23.58098 -23.16172 -22.00158 -21.16025 -19.11711 -18.94712 -18.16123 -18.02053 -17.58891 -17.49753 -16.91863 -16.85751 -16.50655 -16.25801 -15.91445 -15.56725 -15.34480 -15.11789 -14.73561 -14.67551 -14.38925 -13.93552 -13.77041 -13.66474 -13.56898 -13.37450 -13.28115 -13.00496 -12.83611 -12.65855 -12.55998 -12.28401 -12.18598 -11.98666 -11.86584 -11.74452 -11.61456 -11.46140 -11.34402 -11.25766 -10.92578 -10.76033 -10.41001 -10.39404 -8.35930 -6.44441 1.01736 1.29428 1.35367 1.39001 1.49609 2.31035 2.66991 2.79670 2.94879 2.96821 3.49708 3.76409 3.84690 3.89017 3.91365 3.91696 3.95132 4.04293 4.11115 4.15426 4.26784 4.35680 4.39407 4.46030 4.48807 4.56889 4.61867 4.64285 4.68347 4.71629 4.76662 4.85536 4.92055 5.01005 5.05331 5.11452 5.16422 5.17477 5.31738 5.37194 5.43678 5.91909 5.95583 6.30020 6.59180 6.63884 6.72379 7.19672 8.81255 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.028494 B = 0.001982 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.422090 B =14122.542363 C =14546.518992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 H 0.136 0.864 4 O -0.381 6.381 5 C 0.060 3.940 6 C 0.088 3.912 7 H 0.055 0.945 8 C -0.143 4.143 9 C -0.122 4.122 10 C -0.154 4.154 11 C 0.052 3.948 12 O -0.400 6.400 13 C 0.459 3.541 14 O -0.528 6.528 15 O -0.350 6.350 16 C 0.072 3.928 17 C 0.052 3.948 18 O -0.407 6.407 19 C 0.178 3.822 20 C -0.548 4.548 21 H 0.027 0.973 22 C 0.010 3.990 23 N -0.943 5.943 24 Si 0.959 3.041 25 H -0.258 1.258 26 H -0.276 1.276 27 H -0.242 1.242 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.208 3.466 -24.816 31.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 H 0.153 0.847 4 O -0.300 6.300 5 C -0.016 4.016 6 C 0.031 3.969 7 H 0.074 0.926 8 C -0.180 4.180 9 C -0.160 4.160 10 C -0.191 4.191 11 C -0.025 4.025 12 O -0.319 6.319 13 C 0.302 3.698 14 O -0.417 6.417 15 O -0.266 6.266 16 C -0.001 4.001 17 C -0.025 4.025 18 O -0.327 6.327 19 C 0.103 3.897 20 C -0.585 4.585 21 H 0.045 0.955 22 C -0.188 4.188 23 N -0.582 5.582 24 Si 0.780 3.220 25 H -0.183 1.183 26 H -0.201 1.201 27 H -0.165 1.165 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.130 0.870 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.000 2.893 -24.776 31.356 hybrid contribution 0.024 0.004 0.745 0.746 sum 19.024 2.898 -24.030 30.786 Atomic orbital electron populations 1.22190 0.91924 1.03257 1.04918 1.21503 0.95869 0.96668 0.81399 0.84709 1.88038 1.86770 1.35834 1.19387 1.22969 1.02153 0.92530 0.83955 1.22190 0.90974 0.90717 0.93066 0.92650 1.22118 1.03190 0.98186 0.94529 1.21607 0.98117 0.98064 0.98199 1.22183 0.99893 0.98947 0.98090 1.22764 1.00959 0.92521 0.86235 1.87997 1.40998 1.50939 1.52015 1.24080 0.76970 0.83026 0.85698 1.90632 1.36724 1.26756 1.87597 1.86561 1.69851 1.55372 1.14851 1.23288 0.99647 0.95497 0.81646 1.22752 0.82761 1.01477 0.95497 1.87927 1.20387 1.79988 1.44427 1.20369 0.92519 0.92763 0.84074 1.21171 0.91569 1.38264 1.07537 0.95483 1.25899 0.95393 0.96284 1.01185 1.70043 1.06955 1.47168 1.34051 0.85561 0.79687 0.79447 0.77328 1.18261 1.20078 1.16487 0.93161 0.90142 0.88415 0.88730 0.90855 0.88778 0.90401 0.91573 0.89650 0.91209 0.89370 0.88496 0.93333 0.91707 0.87000 0.89054 0.91131 0.96438 0.96527 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 9.46 71.98 0.68 -3.27 16 2 C 0.10 2.49 3.24 29.85 0.10 2.59 16 3 H 0.14 2.16 7.79 -2.39 -0.02 2.15 16 4 O -0.38 -9.87 9.49 -125.55 -1.19 -11.06 16 5 C 0.06 1.01 5.41 71.98 0.39 1.40 16 6 C 0.09 1.53 2.93 30.63 0.09 1.62 16 7 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 8 C -0.14 -1.51 5.42 30.69 0.17 -1.34 16 9 C -0.12 -1.14 6.03 30.71 0.19 -0.96 16 10 C -0.15 -1.66 6.13 30.68 0.19 -1.47 16 11 C 0.05 0.82 6.86 72.01 0.49 1.31 16 12 O -0.40 -8.88 10.37 -144.42 -1.50 -10.37 16 13 C 0.46 14.37 7.33 71.24 0.52 14.90 16 14 O -0.53 -19.53 16.25 28.41 0.46 -19.07 16 15 O -0.35 -11.38 10.09 -48.84 -0.49 -11.88 16 16 C 0.07 2.18 5.84 71.98 0.42 2.60 16 17 C 0.05 1.66 6.33 71.98 0.46 2.11 16 18 O -0.41 -18.86 10.30 -145.57 -1.50 -20.36 16 19 C 0.18 8.78 4.76 71.24 0.34 9.12 16 20 C -0.55 -33.41 9.99 25.60 0.26 -33.16 16 21 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 22 C 0.01 0.60 5.47 84.65 0.46 1.07 16 23 N -0.94 -59.43 13.96 21.45 0.30 -59.13 16 24 Si 0.96 42.66 27.47 68.60 1.88 44.55 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 26 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 27 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 2.05 8.11 -2.39 -0.02 2.03 16 30 H 0.10 1.79 7.87 -2.39 -0.02 1.77 16 31 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 32 H 0.07 1.09 7.87 -2.39 -0.02 1.07 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 2.13 8.13 -2.39 -0.02 2.11 16 42 H 0.11 2.64 8.13 -2.39 -0.02 2.62 16 43 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 46 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 47 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -80.65 388.70 3.58 -77.07 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.87 Total: 13.73 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 4.75 Total: -3.48 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.30 Total: -59.13 kcal Atomic # 8 Polarization: -68.52 SS G_CDS: -4.22 Total: -72.74 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.55 kcal Total: -80.65 3.58 -77.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815197099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.535 kcal (2) G-P(sol) polarization free energy of solvation -80.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds