Wall clock time and date at job start Fri Apr 10 2020 23:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46877 * 2 1 4 4 C 1.36974 * 120.00043 * 86.11357 * 3 2 1 5 5 H 1.07997 * 119.99653 * 173.15929 * 4 3 2 6 6 C 1.38970 * 120.00174 * 353.15614 * 4 3 2 7 7 N 1.31421 * 119.99754 * 345.42129 * 6 4 3 8 8 Si 1.86796 * 120.00307 * 165.41935 * 6 4 3 9 9 H 1.48504 * 109.46828 * 89.99942 * 8 6 4 10 10 H 1.48491 * 109.47249 * 210.00363 * 8 6 4 11 11 H 1.48504 * 109.46956 * 330.00379 * 8 6 4 12 12 C 1.34780 * 119.99884 * 266.11401 * 3 2 1 13 13 O 1.21656 * 119.99752 * 5.21533 * 12 3 2 14 14 C 1.47137 * 119.99554 * 185.21345 * 12 3 2 15 15 C 1.46709 * 127.01694 * 310.85239 * 14 12 3 16 16 C 1.34491 * 106.41489 * 179.97438 * 15 14 12 17 17 C 1.50697 * 125.45422 * 180.02562 * 16 15 14 18 18 N 1.36539 * 109.09084 * 359.97438 * 16 15 14 19 19 C 1.40780 * 124.83575 * 179.97438 * 18 16 15 20 20 C 1.40290 * 126.10443 * 115.05567 * 19 18 16 21 21 N 1.30824 * 108.20367 * 179.97438 * 20 19 18 22 22 N 1.40059 * 108.34136 * 359.97438 * 21 20 19 23 23 C 1.46499 * 125.99841 * 180.02562 * 22 21 20 24 24 C 1.35165 * 108.00605 * 359.76987 * 22 21 20 25 25 C 1.34795 * 110.33230 * 359.75582 * 18 16 15 26 26 C 1.50696 * 125.90765 * 180.27426 * 25 18 16 27 27 H 1.09007 * 109.46552 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47038 * 299.99925 * 1 2 3 29 29 H 1.09000 * 109.47263 * 60.00538 * 1 2 3 30 30 H 1.08997 * 109.47378 * 239.99694 * 2 1 3 31 31 H 1.09000 * 109.47263 * 119.99461 * 2 1 3 32 32 H 0.97004 * 119.99751 * 179.97438 * 7 6 4 33 33 H 1.07999 * 126.79261 * 359.94448 * 15 14 12 34 34 H 1.09000 * 109.47899 * 89.97342 * 17 16 15 35 35 H 1.09009 * 109.47064 * 209.97355 * 17 16 15 36 36 H 1.09004 * 109.47213 * 329.96788 * 17 16 15 37 37 H 1.08004 * 125.90369 * 359.97438 * 20 19 18 38 38 H 1.08999 * 109.47182 * 89.96766 * 23 22 21 39 39 H 1.09001 * 109.47518 * 209.97328 * 23 22 21 40 40 H 1.09002 * 109.46726 * 329.97372 * 23 22 21 41 41 H 1.08004 * 126.16647 * 180.26793 * 24 22 21 42 42 H 1.09001 * 109.46979 * 270.17609 * 26 25 18 43 43 H 1.09003 * 109.47433 * 30.17370 * 26 25 18 44 44 H 1.09004 * 109.47537 * 150.17577 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1707 2.0538 1.1835 5 1 2.6334 3.0296 1.1943 6 6 1.7301 1.4805 2.3703 7 7 0.9219 0.4446 2.3392 8 14 2.2866 2.1821 4.0096 9 1 1.3301 3.2292 4.4501 10 1 2.3335 1.0970 5.0221 11 1 3.6385 2.7781 3.8596 12 6 2.3175 1.9902 -1.1646 13 8 2.0931 1.4283 -2.2200 14 6 2.9154 3.3346 -1.1593 15 6 2.4484 4.5061 -0.4097 16 6 3.2940 5.5090 -0.7062 17 6 3.2092 6.9128 -0.1650 18 7 4.2424 5.0512 -1.5753 19 6 5.2917 5.8275 -2.1027 20 6 6.6613 5.6351 -1.8677 21 7 7.3219 6.5513 -2.5277 22 7 6.3990 7.3578 -3.2055 23 6 6.7211 8.5015 -4.0624 24 6 5.1593 6.8922 -2.9348 25 6 4.0337 3.7487 -1.8528 26 6 4.8743 2.8938 -2.7657 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 0.6146 0.0442 3.1676 33 1 1.5942 4.5538 0.2495 34 1 3.7854 6.9820 0.7577 35 1 3.6133 7.6102 -0.8988 36 1 2.1675 7.1618 0.0376 37 1 7.0955 4.8637 -1.2488 38 1 6.8537 8.1604 -5.0891 39 1 5.9077 9.2260 -4.0224 40 1 7.6417 8.9692 -3.7133 41 1 4.2307 7.2957 -3.3109 42 1 4.4844 2.9549 -3.7818 43 1 5.9046 3.2495 -2.7500 44 1 4.8422 1.8586 -2.4259 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823542804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:22:56 Heat of formation + Delta-G solvation = 99.888947 kcal Electronic energy + Delta-G solvation = -26882.721694 eV Core-core repulsion = 23224.311803 eV Total energy + Delta-G solvation = -3658.409892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.89295 -41.57898 -39.94604 -36.88050 -34.66590 -33.49713 -33.34413 -33.10286 -31.60480 -30.02208 -29.78525 -27.35877 -26.78069 -25.60414 -24.24516 -22.73007 -22.44393 -21.80008 -20.66739 -20.09008 -18.32537 -17.93121 -17.53609 -16.73172 -16.47314 -16.18088 -15.93486 -15.84233 -15.41002 -15.18619 -14.71105 -14.52775 -14.30843 -14.14809 -14.04115 -13.91295 -13.64831 -13.49977 -13.45878 -13.30940 -13.00258 -12.91534 -12.81492 -12.71871 -12.48392 -12.21589 -12.11019 -12.01401 -11.95843 -11.63038 -10.73102 -10.58439 -10.38001 -9.91193 -9.64363 -9.07620 -8.70727 -8.06260 -5.69792 0.61457 1.04336 1.33311 1.39389 1.51081 1.53771 1.63059 1.71614 2.10279 2.38744 2.46967 3.21337 3.33098 3.55544 3.76525 4.00382 4.07401 4.14213 4.35260 4.44529 4.46521 4.52812 4.56745 4.60252 4.67740 4.72275 4.77235 4.84592 4.89520 4.93744 4.98281 5.05471 5.12029 5.17453 5.24674 5.27647 5.46952 5.51506 5.61378 5.83885 5.92840 6.04180 6.05600 6.30887 6.44365 6.67280 6.72164 7.25872 7.75146 8.15004 8.83856 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.003997 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.208567 B = 7004.280143 C = 7834.626368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.141 3.859 3 N -0.446 5.446 4 C -0.335 4.335 5 H 0.114 0.886 6 C -0.013 4.013 7 N -0.887 5.887 8 Si 0.987 3.013 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.270 1.270 12 C 0.510 3.490 13 O -0.649 6.649 14 C -0.211 4.211 15 C -0.174 4.174 16 C 0.017 3.983 17 C -0.070 4.070 18 N -0.358 5.358 19 C -0.061 4.061 20 C 0.056 3.944 21 N -0.302 5.302 22 N -0.361 5.361 23 C 0.091 3.909 24 C 0.090 3.910 25 C 0.062 3.938 26 C -0.065 4.065 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.001 0.999 30 H 0.024 0.976 31 H 0.087 0.913 32 H 0.266 0.734 33 H 0.136 0.864 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.190 0.810 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.209 0.791 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 18.266 -6.995 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.018 3.982 3 N -0.161 5.161 4 C -0.462 4.462 5 H 0.132 0.868 6 C -0.213 4.213 7 N -0.528 5.528 8 Si 0.811 3.189 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.195 1.195 12 C 0.301 3.699 13 O -0.541 6.541 14 C -0.221 4.221 15 C -0.198 4.198 16 C -0.091 4.091 17 C -0.128 4.128 18 N -0.032 5.032 19 C -0.162 4.162 20 C -0.130 4.130 21 N -0.124 5.124 22 N -0.142 5.142 23 C -0.048 4.048 24 C -0.060 4.060 25 C -0.052 4.052 26 C -0.123 4.123 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.020 0.980 30 H 0.042 0.958 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.207 0.793 38 H 0.110 0.890 39 H 0.139 0.861 40 H 0.117 0.883 41 H 0.226 0.774 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.282 18.664 -7.821 23.169 hybrid contribution -1.036 -0.940 1.096 1.777 sum 10.246 17.724 -6.726 21.549 Atomic orbital electron populations 1.22057 0.95909 1.00158 1.00235 1.21196 0.95352 0.82978 0.98705 1.43978 1.54746 1.11786 1.05632 1.20328 1.38276 1.04054 0.83557 0.86847 1.26027 0.95615 0.97353 1.02285 1.70324 1.30400 1.24182 1.27885 0.85018 0.78776 0.77720 0.77381 1.19703 1.20702 1.19490 1.17693 0.83289 0.85916 0.82971 1.90536 1.62375 1.68831 1.32308 1.20377 1.00937 0.94244 1.06526 1.21751 1.02599 0.91469 1.04009 1.20601 0.92282 0.98012 0.98182 1.20326 1.04047 0.87696 1.00686 1.39924 1.21216 1.06731 1.35288 1.17701 0.87522 1.01484 1.09504 1.24122 0.91203 0.98593 0.99096 1.77402 1.16098 1.06012 1.12905 1.48700 1.02969 1.25245 1.37263 1.22385 1.05386 0.83966 0.93019 1.22715 0.91575 0.95728 0.96002 1.20481 0.98091 0.84808 1.01771 1.20148 0.97798 0.97242 0.97065 0.93190 0.89373 0.97950 0.95753 0.89527 0.92324 0.84627 0.90902 0.90340 0.89134 0.79284 0.89036 0.86107 0.88263 0.77396 0.91024 0.89936 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 9.53 71.98 0.69 -5.74 16 2 C 0.14 7.62 5.39 86.38 0.47 8.09 16 3 N -0.45 -24.90 2.63 -639.54 -1.68 -26.58 16 4 C -0.33 -17.99 8.93 84.07 0.75 -17.24 16 5 H 0.11 5.93 4.89 -2.91 -0.01 5.91 16 6 C -0.01 -0.67 5.19 84.93 0.44 -0.23 16 7 N -0.89 -46.29 7.38 21.67 0.16 -46.13 16 8 Si 0.99 40.84 29.58 68.60 2.03 42.87 16 9 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 12 C 0.51 28.36 7.16 86.58 0.62 28.98 16 13 O -0.65 -39.04 16.59 -4.21 -0.07 -39.11 16 14 C -0.21 -10.02 5.35 -18.80 -0.10 -10.12 16 15 C -0.17 -7.21 8.66 23.63 0.20 -7.01 16 16 C 0.02 0.55 6.82 40.97 0.28 0.83 16 17 C -0.07 -1.57 10.04 71.23 0.71 -0.85 16 18 N -0.36 -11.63 2.93 -320.15 -0.94 -12.57 16 19 C -0.06 -1.53 5.12 37.63 0.19 -1.34 16 20 C 0.06 1.37 11.11 85.34 0.95 2.32 16 21 N -0.30 -6.81 12.56 -56.75 -0.71 -7.53 16 22 N -0.36 -5.88 4.02 -369.00 -1.48 -7.36 16 23 C 0.09 0.54 11.47 127.77 1.47 2.01 16 24 C 0.09 1.63 10.60 83.61 0.89 2.51 16 25 C 0.06 2.48 6.91 42.03 0.29 2.77 16 26 C -0.07 -2.29 9.80 71.23 0.70 -1.59 16 27 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.09 4.77 5.73 -2.39 -0.01 4.75 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.02 1.33 7.38 -2.39 -0.02 1.31 16 31 H 0.09 4.77 6.09 -2.39 -0.01 4.76 16 32 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 33 H 0.14 5.74 7.68 -2.91 -0.02 5.72 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.37 6.97 -2.38 -0.02 1.35 16 36 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 38 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.21 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.08 2.37 6.95 -2.39 -0.02 2.36 16 44 H 0.06 2.30 7.96 -2.39 -0.02 2.28 16 Total: -1.00 -74.69 362.29 6.86 -67.83 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 1.01 Total: 25.18 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 8.54 Total: 3.39 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -4.65 Total: -100.16 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -0.07 Total: -39.11 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -74.69 6.86 -67.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823542804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.719 kcal (2) G-P(sol) polarization free energy of solvation -74.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds