Wall clock time and date at job start Fri Apr 10 2020 23:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46914 * 2 1 4 4 N 1.28605 * 124.61778 * 90.02546 * 3 2 1 5 5 C 1.31380 * 108.71798 * 179.97438 * 4 3 2 6 6 C 1.39675 * 105.90155 * 0.02562 * 5 4 3 7 7 C 1.50703 * 127.05227 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.47002 * 95.00001 * 7 6 5 9 9 C 1.39663 * 119.99806 * 180.02562 * 8 7 6 10 10 C 1.38973 * 120.04649 * 0.02562 * 9 8 7 11 11 C 1.38116 * 120.03003 * 179.97438 * 10 9 8 12 12 C 1.38216 * 120.13578 * 359.74695 * 11 10 9 13 13 C 1.38779 * 120.08401 * 0.51068 * 12 11 10 14 14 O 1.35897 * 120.00949 * 179.76812 * 13 12 11 15 15 C 1.42898 * 117.00481 * 359.71829 * 14 13 12 16 16 C 1.52997 * 109.47319 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 C 1.38609 * 119.96517 * 359.48769 * 13 12 11 26 26 N 1.28602 * 124.62111 * 270.26666 * 3 2 1 27 27 H 1.09002 * 109.47204 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47339 * 299.99740 * 1 2 3 29 29 H 1.08999 * 109.46950 * 60.00080 * 1 2 3 30 30 H 1.09005 * 109.47352 * 239.99840 * 2 1 3 31 31 H 1.08999 * 109.46950 * 119.99920 * 2 1 3 32 32 H 1.07995 * 127.04692 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.46841 * 335.00122 * 7 6 5 34 34 H 1.09000 * 109.46773 * 214.99766 * 7 6 5 35 35 H 0.97001 * 119.99801 * 359.97438 * 8 7 6 36 36 H 1.07996 * 119.98339 * 359.95966 * 10 9 8 37 37 H 1.08007 * 119.92769 * 180.02562 * 11 10 9 38 38 H 1.07991 * 119.95689 * 180.26971 * 12 11 10 39 39 H 1.09002 * 109.47259 * 300.00417 * 15 14 13 40 40 H 1.09001 * 109.47074 * 60.00439 * 15 14 13 41 41 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 42 42 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 43 43 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 44 44 H 1.08007 * 120.06150 * 180.27477 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2622 2.0699 1.0584 5 6 2.6837 3.2610 0.6984 6 6 2.6829 3.2614 -0.6983 7 6 3.0833 4.3955 -1.6063 8 7 4.4861 4.2360 -1.9975 9 6 5.0863 5.1723 -2.8423 10 6 4.3539 6.2559 -3.3120 11 6 4.9479 7.1819 -4.1470 12 6 6.2727 7.0367 -4.5134 13 6 7.0074 5.9537 -4.0517 14 8 8.3085 5.8098 -4.4167 15 6 8.8536 6.8074 -5.2827 16 6 10.3176 6.4785 -5.5817 17 6 10.8926 7.5308 -6.4943 18 1 10.2757 8.3523 -6.8275 19 6 12.2066 7.4456 -6.9032 20 7 12.7085 8.3642 -7.6994 21 14 13.2743 6.0259 -6.3253 22 1 13.1618 4.8989 -7.2859 23 1 14.6890 6.4703 -6.2472 24 1 12.8207 5.5796 -4.9835 25 6 6.4152 5.0221 -3.2135 26 7 2.2572 2.0717 -1.0583 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.9718 4.0734 1.3492 33 1 2.9579 5.3426 -1.0816 34 1 2.4547 4.3873 -2.4967 35 1 4.9983 3.4805 -1.6691 36 1 3.3197 6.3738 -3.0241 37 1 4.3772 8.0237 -4.5107 38 1 6.7355 7.7648 -5.1629 39 1 8.2885 6.8277 -6.2145 40 1 8.7913 7.7820 -4.7986 41 1 10.8829 6.4579 -4.6499 42 1 10.3796 5.5040 -6.0658 43 1 13.6328 8.3039 -7.9873 44 1 6.9869 4.1810 -2.8497 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838867621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:23:03 Heat of formation + Delta-G solvation = 70.561632 kcal Electronic energy + Delta-G solvation = -24254.800543 eV Core-core repulsion = 20595.118924 eV Total energy + Delta-G solvation = -3659.681619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.62233 -41.00073 -39.09357 -36.71859 -35.54884 -35.26205 -33.56487 -32.89222 -32.05044 -30.87663 -29.64625 -27.57475 -26.76133 -25.06731 -23.80527 -23.35143 -22.68710 -21.89759 -21.59390 -19.49702 -18.65913 -18.44466 -17.53777 -17.39191 -16.93605 -16.81183 -16.51823 -16.30881 -15.92787 -15.53908 -15.28656 -15.10046 -14.71256 -14.51166 -14.34648 -14.19469 -14.00561 -13.70516 -13.27131 -13.25554 -13.06824 -12.68097 -12.47954 -12.35911 -12.34369 -12.23436 -11.95120 -11.85932 -11.72933 -11.59025 -11.40112 -11.37424 -10.85270 -10.80652 -10.31525 -9.19094 -8.34392 -8.33700 -6.40950 0.61107 0.69856 0.72688 1.23186 1.35969 1.36364 1.37346 1.50354 2.27665 2.33573 2.79822 2.99889 3.00463 3.05921 3.65917 3.91155 3.94390 4.02701 4.15289 4.23071 4.25960 4.26072 4.33480 4.38660 4.50344 4.53247 4.58892 4.68436 4.70633 4.73843 4.75473 4.98388 5.04422 5.12467 5.14337 5.16492 5.31523 5.33792 5.51201 5.55501 5.68048 5.70290 5.76725 6.17163 6.39140 6.60070 6.64559 6.74336 7.24154 7.26844 8.81312 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.001873 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.659553 B =14944.706762 C =15696.739246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.122 3.878 3 N -0.154 5.154 4 N -0.310 5.310 5 C -0.011 4.011 6 C -0.025 4.025 7 C 0.222 3.778 8 N -0.736 5.736 9 C 0.256 3.744 10 C -0.232 4.232 11 C -0.032 4.032 12 C -0.282 4.282 13 C 0.152 3.848 14 O -0.338 6.338 15 C 0.089 3.911 16 C -0.006 4.006 17 C -0.537 4.537 18 H 0.042 0.958 19 C 0.015 3.985 20 N -0.942 5.942 21 Si 0.948 3.052 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.252 1.252 25 C -0.249 4.249 26 N -0.291 5.291 27 H 0.112 0.888 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.224 0.776 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.400 0.600 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.117 0.883 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.027 0.973 42 H 0.025 0.975 43 H 0.270 0.730 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.420 -15.342 19.083 37.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.005 3.995 3 N -0.056 5.056 4 N -0.150 5.150 5 C -0.193 4.193 6 C -0.187 4.187 7 C 0.097 3.903 8 N -0.366 5.366 9 C 0.152 3.848 10 C -0.254 4.254 11 C -0.051 4.051 12 C -0.303 4.303 13 C 0.106 3.894 14 O -0.252 6.252 15 C 0.014 3.986 16 C -0.044 4.044 17 C -0.575 4.575 18 H 0.061 0.939 19 C -0.184 4.184 20 N -0.581 5.581 21 Si 0.771 3.229 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.175 1.175 25 C -0.272 4.272 26 N -0.135 5.135 27 H 0.130 0.870 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.240 0.760 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.235 0.765 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.135 0.865 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -28.823 -16.735 19.107 38.418 hybrid contribution 1.428 0.514 -0.224 1.534 sum -27.395 -16.221 18.884 37.016 Atomic orbital electron populations 1.22138 0.92207 1.05293 1.02452 1.22413 0.96798 0.73076 1.07255 1.48625 1.44180 1.14130 0.98705 1.74079 1.17999 1.06233 1.16702 1.25194 1.03266 0.96099 0.94743 1.23231 1.06459 0.94362 0.94667 1.19484 0.81555 0.93193 0.96057 1.44569 1.11569 1.27806 1.52673 1.17338 0.89841 0.89087 0.88562 1.20787 1.01568 0.96803 1.06281 1.20970 0.92676 0.97895 0.93553 1.21234 0.97629 1.01214 1.10209 1.19071 0.82980 0.94182 0.93179 1.85997 1.24110 1.50844 1.64249 1.22640 0.94749 0.89595 0.91601 1.19448 0.91523 0.96828 0.96596 1.21123 0.97291 1.09714 1.29389 0.93919 1.25863 0.99201 0.98916 0.94381 1.70024 1.15852 1.36513 1.35734 0.85688 0.77700 0.79246 0.80256 1.18977 1.20326 1.17546 1.19738 0.95414 1.03511 1.08555 1.74015 1.16872 1.05837 1.16768 0.86955 0.92388 0.92675 0.86222 0.85753 0.75961 0.87450 0.90275 0.76519 0.83094 0.83355 0.86452 0.92501 0.92411 0.95481 0.95626 0.92095 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 10.24 71.98 0.74 -0.17 16 2 C 0.12 0.94 7.26 86.38 0.63 1.57 16 3 N -0.15 -2.41 3.95 -187.50 -0.74 -3.15 16 4 N -0.31 -5.26 12.05 -56.87 -0.69 -5.95 16 5 C -0.01 -0.15 12.16 85.11 1.03 0.88 16 6 C -0.03 -0.39 6.72 42.98 0.29 -0.10 16 7 C 0.22 2.89 5.50 85.63 0.47 3.37 16 8 N -0.74 -13.06 5.72 -343.18 -1.96 -15.02 16 9 C 0.26 5.97 6.65 38.20 0.25 6.23 16 10 C -0.23 -4.85 9.31 22.42 0.21 -4.64 16 11 C -0.03 -0.77 10.03 22.24 0.22 -0.55 16 12 C -0.28 -8.87 9.04 22.39 0.20 -8.67 16 13 C 0.15 5.34 6.68 22.49 0.15 5.49 16 14 O -0.34 -13.88 10.13 -92.39 -0.94 -14.82 16 15 C 0.09 3.84 4.68 71.98 0.34 4.18 16 16 C -0.01 -0.32 4.41 29.85 0.13 -0.19 16 17 C -0.54 -31.45 9.66 25.60 0.25 -31.20 16 18 H 0.04 2.69 7.99 -2.91 -0.02 2.66 16 19 C 0.01 0.86 5.47 84.65 0.46 1.32 16 20 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 21 Si 0.95 44.90 27.47 68.60 1.88 46.79 16 22 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 24 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 25 C -0.25 -7.41 9.83 22.49 0.22 -7.19 16 26 N -0.29 -5.31 12.05 -47.24 -0.57 -5.88 16 27 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.11 0.92 7.95 -2.39 -0.02 0.90 16 34 H 0.08 1.03 7.95 -2.39 -0.02 1.01 16 35 H 0.40 7.17 8.47 -92.71 -0.79 6.39 16 36 H 0.15 2.13 6.73 -2.91 -0.02 2.11 16 37 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 38 H 0.12 3.82 6.29 -2.91 -0.02 3.81 16 39 H 0.06 2.41 7.67 -2.39 -0.02 2.39 16 40 H 0.06 2.44 7.65 -2.39 -0.02 2.42 16 41 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 42 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 43 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -74.35 372.38 3.05 -71.30 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.17 Total: 14.89 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 5.60 Total: -29.68 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -3.66 Total: -88.48 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.94 Total: -14.82 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.79 kcal Total: -74.35 3.05 -71.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838867621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.861 kcal (2) G-P(sol) polarization free energy of solvation -74.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds