Wall clock time and date at job start Fri Apr 10 2020 23:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00137 * 2 1 4 4 H 1.48501 * 109.46891 * 269.99518 * 3 2 1 5 5 H 1.48502 * 109.47244 * 29.99323 * 3 2 1 6 6 H 1.48493 * 109.47152 * 150.00096 * 3 2 1 7 7 C 1.37873 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00194 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00390 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47501 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47179 * 179.97438 * 10 9 7 12 12 O 1.45205 * 109.47020 * 180.02562 * 11 10 9 13 13 C 1.34229 * 116.99832 * 180.02562 * 12 11 10 14 14 O 1.20819 * 120.00135 * 359.72033 * 13 12 11 15 15 C 1.50702 * 119.99785 * 180.02562 * 13 12 11 16 16 H 1.09003 * 110.01369 * 331.92740 * 15 13 12 17 17 C 1.54270 * 110.02958 * 210.53690 * 15 13 12 18 18 C 1.54966 * 104.15825 * 217.13449 * 17 15 13 19 19 C 1.54889 * 102.77653 * 37.88737 * 18 17 15 20 20 C 1.53873 * 110.03660 * 93.31880 * 15 13 12 21 21 H 1.09001 * 110.02918 * 238.57024 * 20 15 13 22 22 C 1.53004 * 110.02854 * 359.97438 * 20 15 13 23 23 C 1.50701 * 109.46689 * 185.50347 * 22 20 15 24 24 C 1.38242 * 119.99812 * 269.72230 * 23 22 20 25 25 C 1.38233 * 119.99734 * 179.76930 * 24 23 22 26 26 C 1.38233 * 120.00311 * 0.48521 * 25 24 23 27 27 C 1.38243 * 119.99876 * 359.79661 * 26 25 24 28 28 C 1.38231 * 119.99759 * 359.95063 * 27 26 25 29 29 H 0.97003 * 119.99635 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47191 * 59.99664 * 9 7 2 31 31 H 1.09002 * 109.47317 * 300.00068 * 9 7 2 32 32 H 1.09003 * 109.46764 * 60.00156 * 10 9 7 33 33 H 1.09002 * 109.46933 * 300.00354 * 10 9 7 34 34 H 1.08996 * 109.47340 * 60.00438 * 11 10 9 35 35 H 1.09002 * 109.47626 * 300.00112 * 11 10 9 36 36 H 1.08994 * 110.48715 * 335.78054 * 17 15 13 37 37 H 1.08998 * 110.48485 * 98.42620 * 17 15 13 38 38 H 1.09007 * 110.71754 * 279.57253 * 18 17 15 39 39 H 1.08991 * 110.92508 * 156.29912 * 18 17 15 40 40 H 1.09000 * 110.48381 * 203.40642 * 19 18 17 41 41 H 1.08996 * 110.59723 * 80.82265 * 19 18 17 42 42 H 1.09002 * 109.47427 * 305.49814 * 22 20 15 43 43 H 1.08994 * 109.47034 * 65.50295 * 22 20 15 44 44 H 1.07995 * 119.99863 * 0.02562 * 24 23 22 45 45 H 1.08003 * 119.99564 * 180.26047 * 25 24 23 46 46 H 1.08001 * 120.00410 * 179.76612 * 26 25 24 47 47 H 1.07992 * 119.99652 * 179.97438 * 27 26 25 48 48 H 1.08000 * 120.00051 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4237 -6.0908 0.0018 13 6 1.9105 -7.3311 0.0019 14 8 0.7128 -7.4894 0.0065 15 6 2.8285 -8.5263 0.0031 16 1 3.7728 -8.2719 -0.4782 17 6 2.1609 -9.7061 -0.7334 18 6 2.5964 -10.9536 0.0762 19 6 2.5593 -10.4432 1.5382 20 6 3.0821 -8.9948 1.4466 21 1 4.1496 -8.9686 1.6656 22 6 2.3234 -8.1001 2.4289 23 6 2.6860 -8.4834 3.8405 24 6 1.9459 -9.4411 4.5084 25 6 2.2815 -9.7962 5.8016 26 6 3.3509 -9.1864 6.4304 27 6 4.0874 -8.2245 5.7645 28 6 3.7551 -7.8732 4.4695 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8718 -3.6044 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 0.8532 -5.0451 -0.8886 35 1 0.8537 -5.0446 0.8914 36 1 1.0762 -9.6009 -0.7177 37 1 2.5242 -9.7701 -1.7591 38 1 3.6052 -11.2600 -0.2005 39 1 1.8928 -11.7740 -0.0645 40 1 3.2129 -11.0455 2.1691 41 1 1.5398 -10.4573 1.9234 42 1 2.5932 -7.0585 2.2546 43 1 1.2509 -8.2271 2.2820 44 1 1.1082 -9.9149 4.0185 45 1 1.7058 -10.5474 6.3219 46 1 3.6107 -9.4611 7.4420 47 1 4.9226 -7.7479 6.2559 48 1 4.3307 -7.1221 3.9491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850335378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:23:18 Heat of formation + Delta-G solvation = -101.738685 kcal Electronic energy + Delta-G solvation = -26077.288051 eV Core-core repulsion = 22481.382522 eV Total energy + Delta-G solvation = -3595.905530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.91633 -39.43375 -38.01297 -36.19789 -33.98319 -33.31743 -31.73627 -31.05413 -29.98102 -29.18328 -27.03842 -25.47148 -23.62212 -22.77616 -22.03878 -21.56356 -20.74982 -20.36766 -19.15553 -17.60595 -16.97128 -16.48211 -16.40839 -15.93278 -15.79988 -15.22989 -15.15861 -14.51784 -14.44544 -14.02997 -13.83182 -13.49243 -13.25243 -13.14312 -12.86538 -12.32045 -12.25663 -12.17042 -11.93033 -11.86311 -11.69006 -11.31100 -11.25211 -11.06878 -10.97858 -10.91100 -10.85443 -10.73719 -10.64224 -10.60740 -10.34123 -10.19569 -9.71675 -9.48681 -9.16209 -9.06274 -8.81766 -8.38806 -6.03574 -4.06623 1.20555 1.25753 2.36092 2.91641 3.30856 3.37044 3.40608 3.62819 4.18618 4.24535 4.42790 4.49979 4.70903 4.73396 4.85019 4.96642 5.03082 5.09479 5.13786 5.22134 5.24543 5.27725 5.32391 5.36249 5.39781 5.44388 5.58180 5.62406 5.64426 5.69733 5.70803 5.83005 5.88163 5.90540 5.96114 6.02048 6.08266 6.13504 6.32214 6.36579 6.51908 6.53750 6.54237 6.86109 6.87108 6.99175 7.60233 7.71330 7.94544 7.98493 8.36032 8.99644 9.57674 11.07888 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.012264 B = 0.002862 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.516395 B = 9781.365579 C =11446.390152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.067 3.933 12 O -0.359 6.359 13 C 0.466 3.534 14 O -0.511 6.511 15 C -0.086 4.086 16 H 0.104 0.896 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.068 4.068 21 H 0.087 0.913 22 C -0.095 4.095 23 C -0.072 4.072 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.128 4.128 27 C -0.118 4.118 28 C -0.116 4.116 29 H 0.261 0.739 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.712 -25.039 6.785 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.006 4.006 12 O -0.275 6.275 13 C 0.309 3.691 14 O -0.400 6.400 15 C -0.106 4.106 16 H 0.122 0.878 17 C -0.154 4.154 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.087 4.087 21 H 0.105 0.895 22 C -0.132 4.132 23 C -0.072 4.072 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.146 4.146 27 C -0.136 4.136 28 C -0.134 4.134 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.139 0.861 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.188 -24.906 6.790 26.798 hybrid contribution 0.243 1.153 0.032 1.179 sum 7.431 -23.753 6.823 25.807 Atomic orbital electron populations 1.69971 1.06085 1.26748 1.50555 1.25031 0.94881 0.99362 0.95204 0.86548 0.79819 0.83241 0.78137 1.20612 1.21186 1.19797 1.21171 0.93111 0.90693 1.50977 0.92445 1.19047 0.93838 0.90773 0.97644 1.21755 0.99893 0.91066 1.01892 1.23483 0.91265 0.83774 1.02049 1.86531 1.42667 1.15265 1.83058 1.23406 0.88658 0.84956 0.72039 1.90631 1.16967 1.86728 1.45678 1.21810 0.99018 0.91162 0.98597 0.87775 1.22462 1.02208 0.92243 0.98522 1.22486 1.01492 0.97129 0.94843 1.22474 1.01662 0.94492 0.96813 1.21677 1.00802 0.95147 0.91027 0.89474 1.21032 1.01310 0.99990 0.90854 1.19812 0.95477 0.96242 0.95626 1.21077 0.99756 0.97658 0.94822 1.21123 0.97527 1.00074 0.95135 1.21130 0.96244 0.97375 0.99859 1.21153 0.99841 0.97714 0.94919 1.21135 0.97193 0.99893 0.95134 0.92896 0.96282 0.96260 0.92213 0.92186 0.91602 0.91628 0.89450 0.90900 0.91265 0.91071 0.91231 0.91047 0.90117 0.89968 0.86187 0.86277 0.86358 0.86130 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.26 5.53 -26.73 -0.15 -2.41 16 11 C 0.07 1.25 5.47 37.16 0.20 1.45 16 12 O -0.36 -5.94 9.73 -39.25 -0.38 -6.33 16 13 C 0.47 6.92 4.77 36.01 0.17 7.09 16 14 O -0.51 -8.84 14.79 -18.74 -0.28 -9.12 16 15 C -0.09 -0.93 3.40 -90.65 -0.31 -1.23 16 16 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.12 -1.10 6.32 -25.03 -0.16 -1.26 16 18 C -0.12 -0.91 6.91 -24.70 -0.17 -1.08 16 19 C -0.12 -0.96 5.45 -25.07 -0.14 -1.10 16 20 C -0.07 -0.65 2.91 -89.50 -0.26 -0.91 16 21 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 22 C -0.09 -1.09 3.56 -27.88 -0.10 -1.19 16 23 C -0.07 -0.78 4.91 -104.62 -0.51 -1.29 16 24 C -0.12 -1.15 8.94 -39.58 -0.35 -1.51 16 25 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 26 C -0.13 -1.16 10.05 -39.58 -0.40 -1.55 16 27 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 28 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 36 H 0.09 0.98 6.89 -51.93 -0.36 0.63 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.62 6.95 -51.93 -0.36 0.26 16 42 H 0.08 1.06 6.78 -51.93 -0.35 0.71 16 43 H 0.08 1.06 7.07 -51.93 -0.37 0.69 16 44 H 0.12 1.07 7.40 -52.49 -0.39 0.68 16 45 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 47 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 48 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -31.53 387.27 -11.14 -42.67 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.13 Total: -0.76 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -3.90 Total: -22.70 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.66 Total: -15.44 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.53 -11.14 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850335378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.072 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds