Wall clock time and date at job start Fri Apr 10 2020 23:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00137 * 2 1 4 4 H 1.48501 * 109.46891 * 269.99518 * 3 2 1 5 5 H 1.48502 * 109.47244 * 29.99323 * 3 2 1 6 6 H 1.48493 * 109.47152 * 150.00096 * 3 2 1 7 7 C 1.37873 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00194 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00390 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47501 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47179 * 179.97438 * 10 9 7 12 12 O 1.45205 * 109.47020 * 180.02562 * 11 10 9 13 13 C 1.34229 * 116.99832 * 180.02562 * 12 11 10 14 14 O 1.20819 * 120.00135 * 359.72033 * 13 12 11 15 15 C 1.50702 * 119.99785 * 180.02562 * 13 12 11 16 16 H 1.09003 * 110.01369 * 331.92740 * 15 13 12 17 17 C 1.54270 * 110.02958 * 210.53690 * 15 13 12 18 18 C 1.54966 * 104.15825 * 217.13449 * 17 15 13 19 19 C 1.54889 * 102.77653 * 37.88737 * 18 17 15 20 20 C 1.53873 * 110.03660 * 93.31880 * 15 13 12 21 21 H 1.09001 * 110.02918 * 238.57024 * 20 15 13 22 22 C 1.53004 * 110.02854 * 359.97438 * 20 15 13 23 23 C 1.50701 * 109.46689 * 185.50347 * 22 20 15 24 24 C 1.38242 * 119.99812 * 269.72230 * 23 22 20 25 25 C 1.38233 * 119.99734 * 179.76930 * 24 23 22 26 26 C 1.38233 * 120.00311 * 0.48521 * 25 24 23 27 27 C 1.38243 * 119.99876 * 359.79661 * 26 25 24 28 28 C 1.38231 * 119.99759 * 359.95063 * 27 26 25 29 29 H 0.97003 * 119.99635 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47191 * 59.99664 * 9 7 2 31 31 H 1.09002 * 109.47317 * 300.00068 * 9 7 2 32 32 H 1.09003 * 109.46764 * 60.00156 * 10 9 7 33 33 H 1.09002 * 109.46933 * 300.00354 * 10 9 7 34 34 H 1.08996 * 109.47340 * 60.00438 * 11 10 9 35 35 H 1.09002 * 109.47626 * 300.00112 * 11 10 9 36 36 H 1.08994 * 110.48715 * 335.78054 * 17 15 13 37 37 H 1.08998 * 110.48485 * 98.42620 * 17 15 13 38 38 H 1.09007 * 110.71754 * 279.57253 * 18 17 15 39 39 H 1.08991 * 110.92508 * 156.29912 * 18 17 15 40 40 H 1.09000 * 110.48381 * 203.40642 * 19 18 17 41 41 H 1.08996 * 110.59723 * 80.82265 * 19 18 17 42 42 H 1.09002 * 109.47427 * 305.49814 * 22 20 15 43 43 H 1.08994 * 109.47034 * 65.50295 * 22 20 15 44 44 H 1.07995 * 119.99863 * 0.02562 * 24 23 22 45 45 H 1.08003 * 119.99564 * 180.26047 * 25 24 23 46 46 H 1.08001 * 120.00410 * 179.76612 * 26 25 24 47 47 H 1.07992 * 119.99652 * 179.97438 * 27 26 25 48 48 H 1.08000 * 120.00051 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4237 -6.0908 0.0018 13 6 1.9105 -7.3311 0.0019 14 8 0.7128 -7.4894 0.0065 15 6 2.8285 -8.5263 0.0031 16 1 3.7728 -8.2719 -0.4782 17 6 2.1609 -9.7061 -0.7334 18 6 2.5964 -10.9536 0.0762 19 6 2.5593 -10.4432 1.5382 20 6 3.0821 -8.9948 1.4466 21 1 4.1496 -8.9686 1.6656 22 6 2.3234 -8.1001 2.4289 23 6 2.6860 -8.4834 3.8405 24 6 1.9459 -9.4411 4.5084 25 6 2.2815 -9.7962 5.8016 26 6 3.3509 -9.1864 6.4304 27 6 4.0874 -8.2245 5.7645 28 6 3.7551 -7.8732 4.4695 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8718 -3.6044 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 0.8532 -5.0451 -0.8886 35 1 0.8537 -5.0446 0.8914 36 1 1.0762 -9.6009 -0.7177 37 1 2.5242 -9.7701 -1.7591 38 1 3.6052 -11.2600 -0.2005 39 1 1.8928 -11.7740 -0.0645 40 1 3.2129 -11.0455 2.1691 41 1 1.5398 -10.4573 1.9234 42 1 2.5932 -7.0585 2.2546 43 1 1.2509 -8.2271 2.2820 44 1 1.1082 -9.9149 4.0185 45 1 1.7058 -10.5474 6.3219 46 1 3.6107 -9.4611 7.4420 47 1 4.9226 -7.7479 6.2559 48 1 4.3307 -7.1221 3.9491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850335378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:23:18 Heat of formation + Delta-G solvation = -114.948339 kcal Electronic energy + Delta-G solvation = -26077.860865 eV Core-core repulsion = 22481.382522 eV Total energy + Delta-G solvation = -3596.478343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.04420 -40.29496 -38.94852 -37.52236 -35.95347 -34.09315 -33.71453 -31.78648 -30.88241 -29.95577 -28.89213 -26.32298 -25.37373 -23.52192 -23.30380 -22.32147 -22.18817 -21.46891 -20.23761 -18.82538 -18.44445 -17.95910 -17.46776 -17.15982 -16.76584 -16.50450 -16.08535 -15.89324 -15.52427 -15.36719 -14.60587 -14.58496 -14.22158 -14.14768 -14.11070 -13.75532 -13.70558 -13.66315 -13.11053 -12.85052 -12.82696 -12.52676 -12.51988 -12.42374 -12.09751 -11.99368 -11.94129 -11.88193 -11.75760 -11.63806 -11.53174 -11.49621 -11.40220 -11.32535 -11.14991 -10.59142 -9.80504 -9.57923 -8.23405 -6.35288 0.45277 0.51446 1.15339 1.40222 1.41986 1.53104 1.66654 2.40199 2.87743 3.10408 3.37968 3.44554 3.60857 3.86171 3.94521 3.96382 4.03648 4.12542 4.18639 4.25435 4.31338 4.37453 4.38685 4.45164 4.48778 4.52288 4.61351 4.67564 4.75840 4.76451 4.84231 4.88986 4.89607 5.03669 5.04883 5.15378 5.17928 5.19978 5.23582 5.28539 5.41202 5.46922 5.54882 5.59616 5.60647 5.64316 5.73852 5.77811 6.13995 6.17040 6.71359 6.80737 7.34387 8.88924 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.012264 B = 0.002862 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.516395 B = 9781.365579 C =11446.390152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.027 3.973 10 C -0.093 4.093 11 C 0.078 3.922 12 O -0.359 6.359 13 C 0.464 3.536 14 O -0.540 6.540 15 C -0.083 4.083 16 H 0.125 0.875 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.113 4.113 20 C -0.064 4.064 21 H 0.102 0.898 22 C -0.088 4.088 23 C -0.085 4.085 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.131 4.131 27 C -0.125 4.125 28 C -0.132 4.132 29 H 0.265 0.735 30 H -0.004 1.004 31 H -0.005 1.005 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.125 0.875 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.138 0.862 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.984 -26.365 7.363 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.011 4.011 10 C -0.130 4.130 11 C 0.004 3.996 12 O -0.275 6.275 13 C 0.309 3.691 14 O -0.430 6.430 15 C -0.102 4.102 16 H 0.143 0.857 17 C -0.155 4.155 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.082 4.082 21 H 0.120 0.880 22 C -0.125 4.125 23 C -0.085 4.085 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.149 4.149 27 C -0.143 4.143 28 C -0.150 4.150 29 H 0.073 0.927 30 H 0.014 0.986 31 H 0.013 0.987 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.143 0.857 45 H 0.159 0.841 46 H 0.160 0.840 47 H 0.156 0.844 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.475 -26.256 7.367 28.869 hybrid contribution -0.517 1.513 -0.107 1.602 sum 8.958 -24.743 7.260 27.298 Atomic orbital electron populations 1.70108 1.07920 1.27957 1.51420 1.26027 0.95799 1.03578 0.94539 0.85377 0.78657 0.78027 0.78585 1.19643 1.20785 1.18482 1.21617 0.93749 0.91833 1.50939 0.91642 1.18925 0.94239 0.92570 0.95319 1.21445 0.98681 0.90407 1.02481 1.23073 0.91037 0.84009 1.01434 1.86526 1.41958 1.15640 1.83412 1.24348 0.89077 0.85000 0.70625 1.90621 1.18523 1.86859 1.46957 1.22054 0.98888 0.89383 0.99906 0.85708 1.22494 1.00696 0.92585 0.99692 1.22483 1.02846 0.96254 0.93429 1.22449 1.01305 0.93525 0.97796 1.21731 1.01371 0.95601 0.89543 0.87988 1.20900 1.00146 0.99127 0.92378 1.19811 0.96212 0.97136 0.95336 1.21218 0.99896 0.97694 0.95476 1.21431 0.97663 1.00297 0.94750 1.21471 0.95784 0.96752 1.00878 1.21421 1.00442 0.97896 0.94537 1.21256 0.97520 1.00305 0.95956 0.92659 0.98584 0.98692 0.91607 0.91405 0.92142 0.92440 0.91794 0.89337 0.89282 0.90057 0.89923 0.92042 0.92410 0.92151 0.85701 0.84097 0.83996 0.84446 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -3.94 5.53 30.59 0.17 -3.77 16 11 C 0.08 3.01 5.47 71.98 0.39 3.40 16 12 O -0.36 -12.04 9.73 -51.40 -0.50 -12.54 16 13 C 0.46 14.00 4.77 71.24 0.34 14.34 16 14 O -0.54 -19.41 14.79 21.99 0.33 -19.08 16 15 C -0.08 -1.69 3.40 -10.81 -0.04 -1.73 16 16 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 17 C -0.12 -2.04 6.32 31.70 0.20 -1.84 16 18 C -0.11 -1.39 6.91 31.91 0.22 -1.17 16 19 C -0.11 -1.68 5.45 31.67 0.17 -1.50 16 20 C -0.06 -1.17 2.91 -10.07 -0.03 -1.20 16 21 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 22 C -0.09 -2.09 3.56 29.85 0.11 -1.99 16 23 C -0.08 -1.86 4.91 -19.86 -0.10 -1.95 16 24 C -0.12 -2.43 8.94 22.27 0.20 -2.23 16 25 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 26 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 27 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 28 C -0.13 -2.78 9.70 22.27 0.22 -2.56 16 29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 36 H 0.06 1.44 6.89 -2.39 -0.02 1.42 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.04 6.95 -2.39 -0.02 1.02 16 42 H 0.06 1.60 6.78 -2.39 -0.02 1.59 16 43 H 0.06 1.66 7.07 -2.39 -0.02 1.65 16 44 H 0.13 2.20 7.40 -2.91 -0.02 2.18 16 45 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 46 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 47 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 48 H 0.12 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -69.20 387.27 6.42 -62.78 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.91 Total: 16.51 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 3.37 Total: -36.85 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.28 Total: -57.16 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.18 Total: -31.62 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -69.20 6.42 -62.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850335378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.169 kcal (2) G-P(sol) polarization free energy of solvation -69.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds