Wall clock time and date at job start Fri Apr 10 2020 23:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 117.00310 * 2 1 4 4 C 1.40156 * 125.83602 * 179.97438 * 3 2 1 5 5 C 1.36134 * 107.80649 * 180.02562 * 4 3 2 6 6 N 1.39177 * 126.21985 * 179.97438 * 5 4 3 7 7 C 1.46499 * 120.00589 * 359.97438 * 6 5 4 8 8 C 1.50700 * 109.47449 * 180.02562 * 7 6 5 9 9 C 1.38286 * 119.92533 * 90.00147 * 8 7 6 10 10 C 1.38104 * 120.07376 * 180.30101 * 9 8 7 11 11 C 1.38918 * 119.92017 * 359.44392 * 10 9 8 12 12 N 1.39676 * 120.07049 * 180.30184 * 11 10 9 13 13 C 1.46502 * 119.99927 * 180.25372 * 12 11 10 14 14 C 1.46500 * 120.00213 * 0.25045 * 12 11 10 15 15 C 1.50692 * 109.47029 * 90.00163 * 14 12 11 16 16 H 1.07998 * 120.00179 * 0.02562 * 15 14 12 17 17 C 1.37881 * 120.00178 * 180.02562 * 15 14 12 18 18 N 1.31521 * 119.99945 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00333 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46906 * 89.99568 * 19 17 15 21 21 H 1.48497 * 109.46839 * 209.99888 * 19 17 15 22 22 H 1.48495 * 109.46807 * 329.99870 * 19 17 15 23 23 C 1.38905 * 119.85194 * 0.55157 * 11 10 9 24 24 C 1.38099 * 119.92845 * 359.72525 * 23 11 10 25 25 N 1.35804 * 107.55294 * 0.23622 * 5 4 3 26 26 H 0.97000 * 126.03997 * 179.73763 * 25 5 4 27 27 N 1.31104 * 125.83371 * 359.97438 * 3 2 1 28 28 H 1.08992 * 109.47495 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46996 * 300.00570 * 1 2 3 30 30 H 1.09009 * 109.46758 * 59.99717 * 1 2 3 31 31 H 1.07996 * 126.09838 * 359.96457 * 4 3 2 32 32 H 0.97009 * 119.99630 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.46939 * 59.99656 * 7 6 5 34 34 H 1.09000 * 109.46644 * 300.00668 * 7 6 5 35 35 H 1.08002 * 119.96057 * 0.02562 * 9 8 7 36 36 H 1.07998 * 120.04042 * 179.72222 * 10 9 8 37 37 H 1.08999 * 109.46857 * 89.99637 * 13 12 11 38 38 H 1.09000 * 109.47108 * 209.99677 * 13 12 11 39 39 H 1.09001 * 109.46790 * 329.99849 * 13 12 11 40 40 H 1.09003 * 109.47215 * 210.00592 * 14 12 11 41 41 H 1.09002 * 109.46876 * 330.00328 * 14 12 11 42 42 H 0.96995 * 119.99824 * 180.02562 * 18 17 15 43 43 H 1.08006 * 120.03717 * 179.70113 * 23 11 10 44 44 H 1.07997 * 119.96598 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4314 1.4268 0.0005 5 6 3.6437 2.7715 0.0009 6 7 4.8811 3.4087 0.0020 7 6 6.1132 2.6162 0.0033 8 6 7.3043 3.5394 0.0049 9 6 7.8482 3.9618 1.2041 10 6 8.9359 4.8128 1.2092 11 6 9.4908 5.2351 0.0077 12 7 10.5948 6.0908 0.0092 13 6 11.1753 6.5397 -1.2588 14 6 11.1722 6.5394 1.2787 15 6 12.2405 5.5702 1.7149 16 1 12.4671 4.7067 1.1071 17 6 12.9288 5.7858 2.8899 18 7 12.6534 6.8377 3.6299 19 14 14.2537 4.5848 3.4303 20 1 15.5637 5.0103 2.8752 21 1 14.3276 4.5639 4.9133 22 1 13.9228 3.2257 2.9319 23 6 8.9420 4.8088 -1.1950 24 6 7.8508 3.9625 -1.1929 25 7 2.4287 3.3780 0.0060 26 1 2.2683 4.3347 0.0110 27 7 1.4479 2.3781 -0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 4.1941 0.6623 0.0015 32 1 4.9276 4.3777 0.0018 33 1 6.1417 1.9873 -0.8865 34 1 6.1398 1.9877 0.8935 35 1 7.4190 3.6294 2.1378 36 1 9.3574 5.1459 2.1461 37 1 10.6897 7.4632 -1.5739 38 1 12.2427 6.7170 -1.1271 39 1 11.0253 5.7727 -2.0187 40 1 11.6103 7.5290 1.1490 41 1 10.3909 6.5845 2.0374 42 1 13.1378 6.9895 4.4564 43 1 9.3681 5.1392 -2.1309 44 1 7.4234 3.6310 -2.1277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858230942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:23:35 Heat of formation + Delta-G solvation = 59.792323 kcal Electronic energy + Delta-G solvation = -24770.350319 eV Core-core repulsion = 21110.201707 eV Total energy + Delta-G solvation = -3660.148612 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13859 -40.49805 -39.17797 -37.81300 -36.08749 -34.71839 -32.06324 -31.91061 -31.43940 -29.71325 -29.33325 -28.06342 -27.25225 -25.85736 -23.93205 -23.01569 -22.44759 -21.49090 -20.98135 -19.62897 -18.64125 -18.10237 -17.65977 -17.01425 -16.89496 -16.45355 -16.32100 -16.16733 -15.59977 -15.46002 -15.30772 -14.94100 -14.69657 -14.65041 -14.32432 -14.07964 -13.93178 -13.66381 -13.21756 -13.18540 -13.01390 -12.79769 -12.68503 -12.54654 -12.34716 -12.28503 -12.07635 -11.74642 -11.50098 -11.46020 -10.98255 -10.64682 -10.49370 -9.69358 -9.59147 -8.59773 -8.38216 -7.85711 -6.37986 0.66926 0.70168 1.12792 1.36993 1.38517 1.49101 1.60233 1.97416 2.15645 2.33774 2.61026 2.98252 3.05888 3.27226 3.88598 3.99489 4.06038 4.23136 4.41268 4.43696 4.47369 4.50290 4.57346 4.64926 4.66921 4.71498 4.76384 4.85952 4.89715 4.91707 5.01872 5.10022 5.20455 5.25421 5.31718 5.57200 5.62430 5.69291 5.82777 5.88434 6.06092 6.12983 6.18179 6.47870 6.50075 6.81363 6.85966 6.90732 6.91590 7.33912 8.82324 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.002172 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.948806 B =12887.937044 C =13490.763592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.276 3.724 4 C -0.370 4.370 5 C 0.403 3.597 6 N -0.713 5.713 7 C 0.199 3.801 8 C -0.182 4.182 9 C -0.050 4.050 10 C -0.220 4.220 11 C 0.220 3.780 12 N -0.629 5.629 13 C 0.096 3.904 14 C 0.265 3.735 15 C -0.541 4.541 16 H 0.050 0.950 17 C 0.012 3.988 18 N -0.926 5.926 19 Si 0.961 3.039 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.271 1.271 23 C -0.220 4.220 24 C -0.042 4.042 25 N -0.491 5.491 26 H 0.449 0.551 27 N -0.380 5.380 28 H 0.125 0.875 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.155 0.845 32 H 0.409 0.591 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.009 0.991 41 H 0.013 0.987 42 H 0.267 0.733 43 H 0.134 0.866 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.532 -8.341 -10.462 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.212 6.212 3 C 0.072 3.928 4 C -0.404 4.404 5 C 0.174 3.826 6 N -0.350 5.350 7 C 0.076 3.924 8 C -0.185 4.185 9 C -0.069 4.069 10 C -0.243 4.243 11 C 0.115 3.885 12 N -0.336 5.336 13 C -0.047 4.047 14 C 0.143 3.857 15 C -0.579 4.579 16 H 0.069 0.931 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.786 3.214 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.196 1.196 23 C -0.243 4.243 24 C -0.061 4.061 25 N -0.213 5.213 26 H 0.296 0.704 27 N -0.222 5.222 28 H 0.144 0.856 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.173 0.827 32 H 0.246 0.754 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.027 0.973 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.152 0.848 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.182 -8.049 -10.308 23.216 hybrid contribution 1.608 0.527 0.885 1.909 sum -17.574 -7.522 -9.423 21.312 Atomic orbital electron populations 1.23154 0.76283 1.05122 1.01927 1.86256 1.23620 1.21893 1.89425 1.20396 0.91686 0.85285 0.95435 1.19922 0.93785 0.94035 1.32666 1.17936 0.81502 0.89953 0.93189 1.44250 0.99941 1.08895 1.81962 1.20000 0.78394 0.91241 1.02722 1.19405 1.00711 1.05676 0.92730 1.20867 0.93545 0.94103 0.98379 1.20794 1.01295 1.05543 0.96626 1.18323 0.86589 0.88901 0.94731 1.47022 1.30202 1.49386 1.06949 1.21634 0.98213 0.99582 0.85264 1.18799 0.92254 0.93621 0.81032 1.21768 1.19848 1.09649 1.06669 0.93145 1.25778 0.99424 0.97174 0.96349 1.70033 1.42833 1.28911 1.14783 0.85512 0.79263 0.79217 0.77446 1.19720 1.20550 1.19566 1.20820 1.01616 1.06087 0.95746 1.20964 0.93388 0.93697 0.98058 1.45620 1.00793 1.08580 1.66265 0.70443 1.77306 1.12147 0.95156 1.37548 0.85645 0.92774 0.92611 0.82746 0.75428 0.89990 0.91132 0.85604 0.88643 0.92807 0.92577 0.90099 0.97289 0.96882 0.92421 0.84839 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.69 113.37 1.21 1.67 16 2 O -0.31 -7.09 10.58 -93.40 -0.99 -8.08 16 3 C 0.28 6.94 7.88 85.27 0.67 7.62 16 4 C -0.37 -8.55 10.13 22.25 0.23 -8.32 16 5 C 0.40 8.10 8.15 131.25 1.07 9.16 16 6 N -0.71 -12.05 5.73 -348.50 -2.00 -14.05 16 7 C 0.20 3.56 5.66 85.63 0.48 4.04 16 8 C -0.18 -4.23 5.25 -19.84 -0.10 -4.33 16 9 C -0.05 -1.45 9.69 22.25 0.22 -1.24 16 10 C -0.22 -8.36 9.21 22.40 0.21 -8.15 16 11 C 0.22 8.20 6.55 38.21 0.25 8.45 16 12 N -0.63 -25.88 2.99 -726.56 -2.17 -28.05 16 13 C 0.10 3.11 10.19 127.77 1.30 4.41 16 14 C 0.26 13.39 4.92 85.63 0.42 13.81 16 15 C -0.54 -29.51 9.39 25.60 0.24 -29.27 16 16 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 17 C 0.01 0.66 5.46 84.65 0.46 1.13 16 18 N -0.93 -53.33 13.29 21.45 0.28 -53.05 16 19 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C -0.22 -6.32 9.21 22.40 0.21 -6.12 16 24 C -0.04 -0.97 9.69 22.25 0.22 -0.75 16 25 N -0.49 -9.56 7.39 -55.23 -0.41 -9.97 16 26 H 0.45 6.00 8.96 -213.34 -1.91 4.09 16 27 N -0.38 -9.27 12.08 -170.59 -2.06 -11.33 16 28 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.15 3.25 7.83 -2.91 -0.02 3.23 16 32 H 0.41 6.16 8.59 -92.70 -0.80 5.37 16 33 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 34 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 35 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 36 H 0.10 4.31 6.14 -2.91 -0.02 4.29 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 39 H 0.08 2.17 6.20 -2.39 -0.01 2.15 16 40 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 41 H 0.01 0.72 6.19 -2.39 -0.01 0.70 16 42 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.13 3.31 6.14 -2.91 -0.02 3.29 16 44 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -66.79 372.14 0.09 -66.69 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -1.67 Total: 20.46 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 7.08 Total: -7.89 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -6.35 Total: -116.45 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.99 Total: -8.08 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -66.79 0.09 -66.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858230942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.486 kcal (2) G-P(sol) polarization free energy of solvation -66.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds