Wall clock time and date at job start Fri Apr 10 2020 23:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47034 * 276.02013 * 3 2 1 5 5 C 1.46898 * 111.00283 * 293.95929 * 4 3 2 6 6 C 1.46908 * 110.99757 * 170.00234 * 4 3 2 7 7 C 1.53003 * 109.46937 * 190.00153 * 6 4 3 8 8 C 1.52995 * 109.46926 * 179.97438 * 7 6 4 9 9 N 1.46504 * 109.47183 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00198 * 180.02562 * 9 8 7 11 11 O 1.21574 * 119.99963 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99888 * 180.27580 * 10 9 8 13 13 C 1.39466 * 119.99735 * 175.17880 * 12 10 9 14 14 C 1.38642 * 119.64613 * 186.28771 * 13 12 10 15 15 C 1.40820 * 118.67475 * 179.97438 * 14 13 12 16 16 C 1.41544 * 120.99811 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99808 * 201.15377 * 16 15 14 18 18 C 1.40030 * 120.00045 * 21.14426 * 16 15 14 19 19 N 1.30743 * 119.99956 * 12.11539 * 18 16 15 20 20 Si 1.86801 * 120.00104 * 192.11144 * 18 16 15 21 21 H 1.48497 * 109.46987 * 60.00480 * 20 18 16 22 22 H 1.48502 * 109.46828 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46928 * 300.00094 * 20 18 16 24 24 C 1.41159 * 118.00310 * 0.02562 * 15 14 13 25 25 C 1.36591 * 119.12979 * 359.97438 * 24 15 14 26 26 N 1.32069 * 121.25808 * 359.74900 * 25 24 15 27 27 H 4.40883 * 5.52178 * 180.02562 * 4 1 2 28 28 H 1.09005 * 109.47115 * 156.02689 * 3 2 1 29 29 H 1.08993 * 109.47776 * 36.02493 * 3 2 1 30 30 H 1.09001 * 109.46857 * 296.04105 * 5 4 3 31 31 H 1.08998 * 109.47119 * 56.04597 * 5 4 3 32 32 H 1.09002 * 109.46954 * 176.05172 * 5 4 3 33 33 H 1.08994 * 109.47165 * 70.00654 * 6 4 3 34 34 H 1.08998 * 109.47311 * 310.00467 * 6 4 3 35 35 H 1.09008 * 109.46857 * 60.00015 * 7 6 4 36 36 H 1.08998 * 109.47377 * 300.00274 * 7 6 4 37 37 H 1.08994 * 109.47086 * 60.00555 * 8 7 6 38 38 H 1.08998 * 109.47400 * 300.00362 * 8 7 6 39 39 H 0.97000 * 119.99843 * 0.02562 * 9 8 7 40 40 H 0.97000 * 120.00022 * 355.18347 * 12 10 9 41 41 H 1.08000 * 120.66368 * 0.02562 * 14 13 12 42 42 H 0.96996 * 120.00359 * 179.97438 * 19 18 16 43 43 H 1.08000 * 120.43838 * 179.97438 * 24 15 14 44 44 H 1.08002 * 119.37343 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1356 -0.1444 1.3774 5 6 2.7855 1.0302 2.1870 6 6 4.5847 -0.3854 1.3982 7 6 5.0162 -0.7767 2.8130 8 6 6.5252 -1.0283 2.8346 9 7 6.9384 -1.4036 4.1891 10 6 8.2331 -1.6736 4.4482 11 8 9.0582 -1.6062 3.5578 12 7 8.6123 -2.0243 5.6931 13 6 9.9323 -2.4010 5.9399 14 6 10.2850 -2.8850 7.1903 15 6 11.6233 -3.2599 7.4169 16 6 12.0374 -3.7595 8.6748 17 1 13.0800 -3.7220 8.9540 18 6 11.0953 -4.3022 9.5572 19 7 9.8849 -4.5668 9.1396 20 14 11.5678 -4.6484 11.3310 21 1 11.9873 -3.3840 11.9873 22 1 10.4010 -5.2174 12.0520 23 1 12.6909 -5.6193 11.3636 24 6 12.5397 -3.1215 6.3521 25 6 12.0989 -2.6347 5.1544 26 7 10.8345 -2.2977 4.9753 27 1 -1.0500 -0.0002 0.0000 28 1 3.0089 0.9399 -0.4176 29 1 3.0097 -0.8302 -0.6043 30 1 3.2919 1.9097 1.7893 31 1 1.7072 1.1859 2.1542 32 1 3.0979 0.8667 3.2185 33 1 5.1082 0.5218 1.0966 34 1 4.8288 -1.1925 0.7075 35 1 4.4926 -1.6839 3.1147 36 1 4.7721 0.0304 3.5037 37 1 7.0491 -0.1214 2.5328 38 1 6.7689 -1.8356 2.1440 39 1 6.2801 -1.4578 4.8995 40 1 7.9672 -2.0148 6.4174 41 1 9.5479 -2.9735 7.9747 42 1 9.2324 -4.9430 9.7507 43 1 13.5759 -3.3967 6.4827 44 1 12.7966 -2.5276 4.3370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871732990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:23:54 Heat of formation + Delta-G solvation = 49.447612 kcal Electronic energy + Delta-G solvation = -24475.746295 eV Core-core repulsion = 20815.149102 eV Total energy + Delta-G solvation = -3660.597192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.37412 -39.84675 -39.04243 -36.53862 -35.95545 -35.46960 -34.12160 -32.46382 -32.10705 -30.20942 -28.71303 -27.92432 -27.20930 -24.31457 -23.76284 -23.02933 -22.08674 -21.50315 -19.58158 -19.35753 -18.93309 -17.84220 -17.13099 -17.06283 -16.72366 -16.42550 -16.07509 -15.99149 -15.80765 -15.59315 -15.43077 -14.94022 -14.64068 -14.38521 -14.25256 -13.92173 -13.74292 -13.25258 -13.11978 -12.90674 -12.83787 -12.66423 -12.52745 -12.43441 -12.02474 -11.90740 -11.74416 -11.49964 -11.36714 -11.25112 -11.16449 -11.09497 -10.06373 -9.90147 -9.60349 -9.38861 -8.80299 -8.56650 -6.56402 0.86684 1.04019 1.42619 1.53871 1.60530 1.62002 1.80196 1.92815 2.21249 2.30374 2.86192 3.02402 3.28643 3.55682 3.80619 3.97334 4.05603 4.12096 4.20153 4.37292 4.41900 4.51691 4.61415 4.65172 4.72604 4.74156 4.82312 4.88363 4.95900 5.01718 5.11107 5.12884 5.18095 5.22614 5.29171 5.52996 5.55083 5.68491 5.87686 5.96656 6.01406 6.03006 6.29345 6.59513 6.71519 6.82024 6.85598 7.03078 7.65066 7.93649 8.28106 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023907 B = 0.001951 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.900482 B =14345.705245 C =15301.991684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.213 4.213 3 C 0.158 3.842 4 N -0.550 5.550 5 C 0.020 3.980 6 C 0.060 3.940 7 C -0.111 4.111 8 C 0.144 3.856 9 N -0.731 5.731 10 C 0.688 3.312 11 O -0.582 6.582 12 N -0.661 5.661 13 C 0.350 3.650 14 C -0.268 4.268 15 C 0.110 3.890 16 C -0.478 4.478 17 H 0.084 0.916 18 C 0.036 3.964 19 N -0.812 5.812 20 Si 0.991 3.009 21 H -0.259 1.259 22 H -0.265 1.265 23 H -0.261 1.261 24 C -0.299 4.299 25 C 0.112 3.888 26 N -0.581 5.581 27 H 0.243 0.757 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.410 0.590 40 H 0.420 0.580 41 H 0.138 0.862 42 H 0.292 0.708 43 H 0.115 0.885 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.967 7.921 -8.548 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.213 4.213 3 C 0.032 3.968 4 N -0.274 5.274 5 C -0.128 4.128 6 C -0.067 4.067 7 C -0.149 4.149 8 C 0.019 3.981 9 N -0.389 5.389 10 C 0.387 3.613 11 O -0.457 6.457 12 N -0.310 5.310 13 C 0.123 3.877 14 C -0.294 4.294 15 C 0.101 3.899 16 C -0.509 4.509 17 H 0.102 0.898 18 C -0.181 4.181 19 N -0.437 5.437 20 Si 0.811 3.189 21 H -0.184 1.184 22 H -0.189 1.189 23 H -0.185 1.185 24 C -0.323 4.323 25 C -0.041 4.041 26 N -0.301 5.301 27 H 0.259 0.741 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.246 0.754 40 H 0.257 0.743 41 H 0.155 0.845 42 H 0.103 0.897 43 H 0.133 0.867 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.998 7.818 -9.994 22.022 hybrid contribution 0.210 0.059 1.683 1.697 sum -17.788 7.878 -8.311 21.155 Atomic orbital electron populations 1.25683 0.96845 1.00437 0.98435 1.23305 0.95050 1.01094 1.01879 1.19097 0.84921 1.02583 0.90233 1.61898 1.14299 1.40199 1.11015 1.22480 1.01240 0.90368 0.98667 1.21997 0.86129 1.01361 0.97258 1.21627 0.92075 1.03429 0.97803 1.21117 0.95346 0.99799 0.81802 1.44981 1.05864 1.74742 1.13357 1.16286 0.83628 0.78608 0.82767 1.90970 1.51982 1.57511 1.45231 1.42434 1.09154 1.69206 1.10214 1.18225 0.84545 0.94316 0.90664 1.21777 0.99561 1.11725 0.96294 1.18025 0.91423 0.87349 0.93053 1.19890 0.96196 1.35255 0.99553 0.89787 1.26860 0.94035 0.92179 1.04987 1.69759 1.05400 1.30251 1.38330 0.85115 0.79045 0.79544 0.75192 1.18373 1.18943 1.18520 1.21828 1.00770 1.14513 0.95229 1.21904 0.91383 0.94686 0.96105 1.67327 1.02507 1.26932 1.33330 0.74097 0.91534 0.87579 0.94905 0.91850 0.90254 0.93505 0.89551 0.90074 0.90120 0.92590 0.92734 0.75363 0.74288 0.84503 0.89677 0.86676 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.64 19.25 74.32 1.43 -1.21 16 2 C -0.21 -3.40 12.38 31.12 0.39 -3.02 16 3 C 0.16 2.13 5.46 84.50 0.46 2.59 16 4 N -0.55 -8.07 4.74 -933.63 -4.43 -12.49 16 5 C 0.02 0.27 9.14 127.69 1.17 1.44 16 6 C 0.06 0.82 4.96 86.30 0.43 1.25 16 7 C -0.11 -1.63 5.25 30.59 0.16 -1.47 16 8 C 0.14 3.18 5.67 86.38 0.49 3.67 16 9 N -0.73 -19.19 5.56 -478.56 -2.66 -21.85 16 10 C 0.69 26.91 8.52 179.05 1.53 28.43 16 11 O -0.58 -28.48 14.60 -3.95 -0.06 -28.54 16 12 N -0.66 -26.59 5.40 -322.37 -1.74 -28.33 16 13 C 0.35 17.62 7.42 132.76 0.98 18.61 16 14 C -0.27 -13.98 8.67 23.00 0.20 -13.78 16 15 C 0.11 5.94 5.65 -21.12 -0.12 5.82 16 16 C -0.48 -24.81 9.15 23.52 0.22 -24.59 16 17 H 0.08 4.15 7.88 -2.91 -0.02 4.12 16 18 C 0.04 1.71 5.31 85.29 0.45 2.16 16 19 N -0.81 -39.40 10.50 21.84 0.23 -39.17 16 20 Si 0.99 35.64 29.58 68.60 2.03 37.67 16 21 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 22 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 23 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 24 C -0.30 -15.15 9.85 22.60 0.22 -14.93 16 25 C 0.11 5.59 11.10 84.27 0.94 6.53 16 26 N -0.58 -31.00 7.86 -194.26 -1.53 -32.53 16 27 H 0.24 1.49 7.80 -4.42 -0.03 1.45 16 28 H 0.07 0.77 8.12 -2.38 -0.02 0.75 16 29 H 0.11 1.22 7.93 -2.39 -0.02 1.20 16 30 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.89 7.17 -2.39 -0.02 0.88 16 32 H 0.08 0.96 6.47 -2.39 -0.02 0.94 16 33 H 0.05 0.60 8.12 -2.39 -0.02 0.58 16 34 H 0.09 1.11 7.93 -2.39 -0.02 1.09 16 35 H 0.08 1.21 8.14 -2.38 -0.02 1.20 16 36 H 0.08 1.05 6.55 -2.39 -0.02 1.03 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.41 7.86 8.49 -92.71 -0.79 7.07 16 40 H 0.42 13.51 8.72 -92.71 -0.81 12.70 16 41 H 0.14 7.05 5.81 -2.91 -0.02 7.03 16 42 H 0.29 12.64 8.29 -92.71 -0.77 11.87 16 43 H 0.12 5.29 8.06 -2.91 -0.02 5.27 16 44 H 0.15 6.29 8.06 -2.91 -0.02 6.26 16 Total: -1.00 -72.62 375.31 0.22 -72.39 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: -0.57 Total: 41.33 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 8.94 Total: 11.51 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -10.12 Total: -134.37 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.06 Total: -28.54 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Total: -72.62 0.22 -72.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.841 kcal (2) G-P(sol) polarization free energy of solvation -72.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds