Wall clock time and date at job start Fri Apr 10 2020 23:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46898 * 110.99878 * 2 1 4 4 C 1.46897 * 110.99940 * 123.95755 * 2 1 3 5 5 H 1.08998 * 109.49780 * 54.99785 * 4 2 1 6 6 C 1.53044 * 109.49957 * 294.93463 * 4 2 1 7 7 C 1.53036 * 109.54065 * 178.68498 * 6 4 2 8 8 C 1.53194 * 109.31353 * 61.36070 * 7 6 4 9 9 N 1.46924 * 108.77592 * 305.36793 * 8 7 6 10 10 C 1.34772 * 120.62891 * 233.60729 * 9 8 7 11 11 O 1.21284 * 120.00168 * 180.02562 * 10 9 8 12 12 C 1.50699 * 120.00279 * 359.97438 * 10 9 8 13 13 H 1.09010 * 109.46742 * 60.00240 * 12 10 9 14 14 C 1.50701 * 109.47183 * 300.00560 * 12 10 9 15 15 H 1.07995 * 120.00176 * 326.29759 * 14 12 10 16 16 C 1.37882 * 119.99919 * 146.30092 * 14 12 10 17 17 N 1.31515 * 119.99753 * 5.35315 * 16 14 12 18 18 Si 1.86795 * 119.99950 * 185.34847 * 16 14 12 19 19 H 1.48503 * 109.47217 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46719 * 120.00233 * 18 16 14 21 21 H 1.48501 * 109.47310 * 240.00160 * 18 16 14 22 22 C 1.50700 * 109.47148 * 179.97438 * 12 10 9 23 23 C 1.38227 * 119.99949 * 66.42148 * 22 12 10 24 24 C 1.38232 * 120.00050 * 179.76788 * 23 22 12 25 25 C 1.38234 * 119.99946 * 0.49874 * 24 23 22 26 26 C 1.38238 * 120.00046 * 359.74902 * 25 24 23 27 27 C 1.38232 * 119.99797 * 246.68686 * 22 12 10 28 28 C 1.46940 * 118.76418 * 53.58714 * 9 8 7 29 29 H 1.08998 * 109.47263 * 59.99254 * 1 2 3 30 30 H 1.09004 * 109.46835 * 299.99790 * 1 2 3 31 31 H 1.08994 * 109.47114 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46925 * 63.95587 * 3 2 1 33 33 H 1.08995 * 109.46904 * 183.95504 * 3 2 1 34 34 H 1.08997 * 109.47499 * 303.95547 * 3 2 1 35 35 H 1.09001 * 109.45584 * 298.70696 * 6 4 2 36 36 H 1.08999 * 109.45816 * 58.67445 * 6 4 2 37 37 H 1.08998 * 109.49891 * 181.31670 * 7 6 4 38 38 H 1.09000 * 109.49656 * 301.38193 * 7 6 4 39 39 H 1.09004 * 109.58224 * 65.15370 * 8 7 6 40 40 H 1.08990 * 109.58814 * 185.43033 * 8 7 6 41 41 H 0.96997 * 119.99547 * 179.97438 * 17 16 14 42 42 H 1.08001 * 120.00117 * 359.97438 * 23 22 12 43 43 H 1.08000 * 120.00197 * 180.23127 * 24 23 22 44 44 H 1.08002 * 120.00103 * 179.73127 * 25 24 23 45 45 H 1.07995 * 119.99984 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.00487 * 0.02562 * 27 22 12 47 47 H 1.08997 * 109.61367 * 186.64316 * 28 9 8 48 48 H 1.08998 * 109.56178 * 66.21177 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.5756 -1.7718 1.1243 6 6 1.6108 -0.0691 2.4446 7 6 2.1305 -0.8837 3.6313 8 6 3.6586 -0.9662 3.5588 9 7 4.0415 -1.5016 2.2453 10 6 4.8539 -2.5727 2.1508 11 8 5.1632 -3.0050 1.0606 12 6 5.3792 -3.2327 3.3996 13 1 4.5430 -3.5888 4.0015 14 6 6.1821 -2.2358 4.1950 15 1 6.7577 -1.4770 3.6859 16 6 6.1818 -2.2926 5.5726 17 7 5.5677 -3.2782 6.1899 18 14 7.0538 -0.9698 6.5621 19 1 7.6620 0.0201 5.6372 20 1 6.0748 -0.2857 7.4446 21 1 8.1173 -1.5919 7.3911 22 6 6.2568 -4.3978 3.0209 23 6 7.4545 -4.1770 2.3671 24 6 8.2619 -5.2453 2.0240 25 6 7.8666 -6.5352 2.3256 26 6 6.6664 -6.7563 2.9749 27 6 5.8615 -5.6876 3.3226 28 6 3.5218 -0.8477 1.0364 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7044 1.8723 0.9233 33 1 3.0828 1.3432 -0.0709 34 1 1.5899 1.9164 -0.8524 35 1 2.0510 0.9278 2.4678 36 1 0.5256 0.0116 2.5073 37 1 1.8360 -0.3991 4.5621 38 1 1.7095 -1.8885 3.5951 39 1 4.0846 0.0291 3.6861 40 1 4.0267 -1.6244 4.3456 41 1 5.5679 -3.3183 7.1591 42 1 7.7611 -3.1696 2.1272 43 1 9.1994 -5.0726 1.5165 44 1 8.4953 -7.3702 2.0537 45 1 6.3575 -7.7641 3.2102 46 1 4.9235 -5.8604 3.8292 47 1 3.7991 -1.4299 0.1576 48 1 3.9371 0.1570 0.9577 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411756358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:25:27 Heat of formation + Delta-G solvation = -18.880560 kcal Electronic energy + Delta-G solvation = -27757.761989 eV Core-core repulsion = 24197.742208 eV Total energy + Delta-G solvation = -3560.019781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39737 -40.01745 -38.98664 -36.77326 -35.54543 -33.11356 -32.87626 -31.53102 -31.19864 -29.03003 -28.57448 -26.61393 -25.65047 -24.92803 -23.20777 -23.04903 -22.29412 -20.75559 -19.75452 -18.68737 -17.88447 -17.48415 -16.97691 -16.50086 -16.36057 -16.09821 -15.75347 -15.61120 -15.42319 -15.31810 -14.87524 -14.73169 -14.25435 -14.04133 -13.99043 -13.79744 -13.61679 -13.36296 -13.28304 -13.01733 -12.84051 -12.74873 -12.64606 -12.54273 -12.20525 -12.10261 -11.96221 -11.80328 -11.76482 -11.68871 -11.50977 -11.24935 -10.66415 -10.35801 -9.55482 -9.49510 -9.24641 -9.16601 -8.18992 -6.27726 0.76471 0.81306 1.40614 1.45803 1.54633 1.92014 2.22045 2.43635 3.08545 3.10425 3.26475 3.73536 3.78400 4.06496 4.09248 4.18269 4.22845 4.30368 4.34128 4.37271 4.44843 4.49277 4.54444 4.56597 4.64905 4.69083 4.74319 4.86498 4.87973 4.97049 4.98675 5.02177 5.04366 5.07495 5.09935 5.10422 5.27251 5.37139 5.37543 5.45543 5.66776 5.76097 5.79091 5.85312 5.95418 6.08058 6.11856 6.24530 6.40834 6.61577 6.74210 7.35685 7.48786 8.88887 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.004950 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.114634 B = 5654.788430 C = 7107.837170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.553 5.553 3 C 0.016 3.984 4 C 0.082 3.918 5 H 0.068 0.932 6 C -0.140 4.140 7 C -0.125 4.125 8 C 0.107 3.893 9 N -0.603 5.603 10 C 0.523 3.477 11 O -0.596 6.596 12 C 0.060 3.940 13 H 0.065 0.935 14 C -0.506 4.506 15 H 0.048 0.952 16 C 0.041 3.959 17 N -0.900 5.900 18 Si 0.944 3.056 19 H -0.271 1.271 20 H -0.267 1.267 21 H -0.287 1.287 22 C -0.037 4.037 23 C -0.111 4.111 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.130 4.130 27 C -0.141 4.141 28 C 0.120 3.880 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.268 0.732 42 H 0.093 0.907 43 H 0.135 0.865 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.106 0.894 47 H 0.067 0.933 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.089 5.825 -5.275 11.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.276 5.276 3 C -0.132 4.132 4 C -0.027 4.027 5 H 0.086 0.914 6 C -0.179 4.179 7 C -0.164 4.164 8 C -0.015 4.015 9 N -0.335 5.335 10 C 0.314 3.686 11 O -0.478 6.478 12 C 0.039 3.961 13 H 0.083 0.917 14 C -0.544 4.544 15 H 0.066 0.934 16 C -0.161 4.161 17 N -0.537 5.537 18 Si 0.770 3.230 19 H -0.195 1.195 20 H -0.192 1.192 21 H -0.214 1.214 22 C -0.038 4.038 23 C -0.130 4.130 24 C -0.154 4.154 25 C -0.162 4.162 26 C -0.147 4.147 27 C -0.159 4.159 28 C -0.003 4.003 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.157 0.843 46 H 0.124 0.876 47 H 0.086 0.914 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.840 5.324 -6.105 11.273 hybrid contribution 0.305 0.944 1.486 1.787 sum -7.536 6.268 -4.619 10.836 Atomic orbital electron populations 1.22431 0.85925 1.02334 1.01655 1.62134 1.09255 1.14739 1.41503 1.22534 1.00783 0.88318 1.01584 1.21866 0.93878 0.97613 0.89373 0.91415 1.22120 1.01680 0.99727 0.94344 1.21863 0.94597 1.00575 0.99361 1.21944 0.94854 1.00042 0.84688 1.47940 1.47910 1.30046 1.07627 1.21592 0.76484 0.79188 0.91300 1.90538 1.60549 1.65634 1.31042 1.17969 0.95801 0.92152 0.90226 0.91670 1.20618 1.29748 1.13232 0.90805 0.93404 1.25445 0.95389 0.97005 0.98248 1.70023 1.43173 1.30958 1.09567 0.85710 0.78745 0.79706 0.78865 1.19531 1.19243 1.21361 1.20139 0.95481 0.94653 0.93520 1.20830 0.94946 0.98275 0.98899 1.21315 0.99979 0.93018 1.01040 1.21265 0.97239 0.96983 1.00699 1.21301 0.95227 0.98812 0.99397 1.21117 1.00349 0.92888 1.01570 1.21499 0.93402 0.97476 0.87880 0.90013 0.94376 0.91790 0.94244 0.91900 0.89983 0.90768 0.90134 0.89136 0.92653 0.91868 0.88456 0.92291 0.88923 0.84749 0.83544 0.84253 0.87583 0.91450 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.21 127.69 1.18 1.61 16 2 N -0.55 -12.79 5.01 -922.83 -4.62 -17.41 16 3 C 0.02 0.30 8.83 127.69 1.13 1.43 16 4 C 0.08 2.24 2.38 44.99 0.11 2.34 16 5 H 0.07 2.07 8.10 -2.39 -0.02 2.05 16 6 C -0.14 -3.25 4.46 30.62 0.14 -3.11 16 7 C -0.13 -3.46 6.08 30.67 0.19 -3.27 16 8 C 0.11 3.81 5.58 86.36 0.48 4.29 16 9 N -0.60 -23.84 2.97 -818.90 -2.43 -26.28 16 10 C 0.52 24.90 6.98 87.66 0.61 25.51 16 11 O -0.60 -31.18 14.84 -3.04 -0.05 -31.22 16 12 C 0.06 2.95 1.56 -13.03 -0.02 2.93 16 13 H 0.07 3.44 6.73 -2.38 -0.02 3.43 16 14 C -0.51 -25.54 5.51 25.60 0.14 -25.40 16 15 H 0.05 2.51 7.82 -2.91 -0.02 2.49 16 16 C 0.04 2.06 4.92 84.66 0.42 2.48 16 17 N -0.90 -46.88 12.86 21.45 0.28 -46.60 16 18 Si 0.94 39.98 29.54 68.60 2.03 42.01 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 22 C -0.04 -1.82 4.30 -19.87 -0.09 -1.90 16 23 C -0.11 -5.22 8.33 22.27 0.19 -5.04 16 24 C -0.14 -5.31 10.05 22.27 0.22 -5.09 16 25 C -0.14 -5.10 10.05 22.27 0.22 -4.88 16 26 C -0.13 -4.90 10.05 22.27 0.22 -4.67 16 27 C -0.14 -6.37 9.67 22.27 0.22 -6.15 16 28 C 0.12 4.07 5.65 86.36 0.49 4.55 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 0.61 6.61 -2.38 -0.02 0.59 16 31 H 0.06 1.17 8.11 -2.39 -0.02 1.16 16 32 H 0.04 0.69 6.31 -2.39 -0.02 0.68 16 33 H 0.06 1.33 6.22 -2.39 -0.01 1.32 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.63 6.46 -2.39 -0.02 1.61 16 36 H 0.08 1.59 6.55 -2.39 -0.02 1.57 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.10 4.13 4.57 -2.39 -0.01 4.12 16 41 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 42 H 0.09 4.53 7.88 -2.91 -0.02 4.50 16 43 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 44 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 45 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 46 H 0.11 4.72 7.96 -2.91 -0.02 4.69 16 47 H 0.07 2.63 7.01 -2.39 -0.02 2.62 16 48 H 0.07 2.20 6.18 -2.39 -0.01 2.18 16 Total: -1.00 -61.94 369.83 1.98 -59.96 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.94 Total: 33.91 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 5.84 Total: -14.36 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -6.78 Total: -90.29 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.05 Total: -31.22 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -61.94 1.98 -59.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411756358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.077 kcal (2) G-P(sol) polarization free energy of solvation -61.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds