Wall clock time and date at job start Fri Apr 10 2020 23:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47543 * 2 1 4 4 H 1.09001 * 109.46636 * 55.93388 * 3 2 1 5 5 C 1.50701 * 109.47354 * 175.92821 * 3 2 1 6 6 H 1.08002 * 119.99813 * 120.00443 * 5 3 2 7 7 C 1.37879 * 120.00191 * 300.00770 * 5 3 2 8 8 N 1.31514 * 119.99855 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99924 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47177 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47245 * 119.99772 * 9 7 5 12 12 H 1.48503 * 109.46968 * 240.00038 * 9 7 5 13 13 N 1.46901 * 109.47594 * 295.93521 * 3 2 1 14 14 C 1.46897 * 110.99529 * 296.39988 * 13 3 2 15 15 C 1.46897 * 111.00236 * 172.44366 * 13 3 2 16 16 C 1.52999 * 109.47193 * 284.44145 * 15 13 3 17 17 H 1.08991 * 110.64681 * 58.40156 * 16 15 13 18 18 C 1.54596 * 110.72479 * 295.24285 * 16 15 13 19 19 C 1.53993 * 105.14082 * 219.68750 * 18 16 15 20 20 N 1.47893 * 107.05971 * 358.77778 * 19 18 16 21 21 C 1.46896 * 111.00039 * 145.84414 * 20 19 18 22 22 C 1.50705 * 109.47267 * 69.87612 * 21 20 19 23 23 C 1.38236 * 119.99560 * 269.72904 * 22 21 20 24 24 C 1.38238 * 119.99773 * 179.76546 * 23 22 21 25 25 C 1.38231 * 119.99794 * 0.48203 * 24 23 22 26 26 C 1.38236 * 120.00404 * 359.78995 * 25 24 23 27 27 C 1.38232 * 120.00102 * 89.99793 * 22 21 20 28 28 C 1.48531 * 105.82166 * 25.32950 * 20 19 18 29 29 H 1.09004 * 109.47095 * 295.26797 * 1 2 3 30 30 H 1.09000 * 109.47071 * 55.26123 * 1 2 3 31 31 H 1.09000 * 109.47639 * 175.26545 * 1 2 3 32 32 H 1.08997 * 109.47087 * 120.00960 * 2 1 3 33 33 H 1.09009 * 109.46587 * 240.00112 * 2 1 3 34 34 H 0.96997 * 119.99704 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47440 * 65.59577 * 14 13 3 36 36 H 1.09006 * 109.47082 * 185.58590 * 14 13 3 37 37 H 1.08996 * 109.47563 * 305.58726 * 14 13 3 38 38 H 1.09003 * 109.46895 * 44.43938 * 15 13 3 39 39 H 1.08995 * 109.47345 * 164.43615 * 15 13 3 40 40 H 1.09008 * 110.30761 * 338.60676 * 18 16 15 41 41 H 1.08998 * 110.30403 * 100.77042 * 18 16 15 42 42 H 1.09002 * 109.91284 * 118.13301 * 19 18 16 43 43 H 1.08995 * 109.91536 * 239.22316 * 19 18 16 44 44 H 1.09006 * 109.47057 * 189.87261 * 21 20 19 45 45 H 1.08991 * 109.47521 * 309.87316 * 21 20 19 46 46 H 1.08001 * 120.00129 * 359.97438 * 23 22 21 47 47 H 1.07995 * 119.99684 * 180.25136 * 24 23 22 48 48 H 1.07997 * 119.99934 * 179.76673 * 25 24 23 49 49 H 1.07995 * 120.00088 * 179.97438 * 26 25 24 50 50 H 1.07992 * 120.00143 * 359.97438 * 27 22 21 51 51 H 1.09003 * 110.67078 * 202.36359 * 28 20 19 52 52 H 1.09002 * 110.66966 * 79.23114 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6185 1.9768 0.8513 5 6 3.5437 1.4435 0.1009 6 1 4.1371 1.8924 -0.6820 7 6 4.1619 0.8716 1.1926 8 7 3.4393 0.3254 2.1461 9 14 6.0257 0.8724 1.3172 10 1 6.6013 1.5431 0.1238 11 1 6.4395 1.6013 2.5430 12 1 6.5180 -0.5271 1.3834 13 7 1.6323 2.1061 -1.2455 14 6 2.2522 1.4632 -2.4118 15 6 1.9475 3.5403 -1.2054 16 6 0.9364 4.2598 -0.3104 17 1 0.9504 3.8438 0.6969 18 6 -0.4839 4.1802 -0.9157 19 6 -1.1077 5.5650 -0.6613 20 7 -0.1037 6.3648 0.0733 21 6 -0.1758 7.7810 -0.3102 22 6 -1.4512 8.3815 0.2227 23 6 -2.5997 8.3592 -0.5464 24 6 -3.7708 8.9057 -0.0557 25 6 -3.7909 9.4833 1.2000 26 6 -2.6411 9.5105 1.9668 27 6 -1.4712 8.9594 1.4782 28 6 1.2161 5.7836 -0.2823 29 1 -0.3633 0.4387 0.9294 30 1 -0.3633 0.5856 -0.8445 31 1 -0.3634 -1.0241 -0.0848 32 1 1.8933 -0.5140 0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 3.8742 -0.0767 2.9142 35 1 1.8691 0.4479 -2.5135 36 1 2.0140 2.0329 -3.3101 37 1 3.3334 1.4319 -2.2776 38 1 2.9516 3.6806 -0.8050 39 1 1.8977 3.9516 -2.2135 40 1 -0.4284 3.9810 -1.9859 41 1 -1.0653 3.4057 -0.4155 42 1 -1.3434 6.0460 -1.6106 43 1 -2.0130 5.4602 -0.0635 44 1 0.6787 8.3142 0.1066 45 1 -0.1613 7.8644 -1.3968 46 1 -2.5828 7.9119 -1.5293 47 1 -4.6690 8.8847 -0.6550 48 1 -4.7049 9.9135 1.5818 49 1 -2.6568 9.9621 2.9477 50 1 -0.5731 8.9803 2.0774 51 1 1.9598 6.0242 0.4774 52 1 1.5391 6.1336 -1.2628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383074535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:26:44 Heat of formation + Delta-G solvation = 15.174880 kcal Electronic energy + Delta-G solvation = -27047.595931 eV Core-core repulsion = 23624.886000 eV Total energy + Delta-G solvation = -3422.709931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.68031 -39.68054 -38.51213 -35.09998 -34.05353 -32.94710 -31.74570 -31.23245 -30.22069 -28.70991 -27.40895 -26.01742 -25.30016 -23.54617 -23.26789 -22.45544 -21.68367 -21.21022 -20.27389 -18.27881 -17.54437 -17.18551 -16.99803 -16.46777 -16.25731 -16.00470 -15.85173 -15.36946 -15.02994 -14.66794 -14.48697 -14.28350 -14.18834 -13.92768 -13.81187 -13.61649 -13.37520 -13.18972 -13.13762 -12.91959 -12.71449 -12.55218 -12.48238 -12.37771 -12.23398 -11.92832 -11.89521 -11.73438 -11.68571 -11.59769 -11.48863 -11.32101 -11.16495 -10.86952 -10.37766 -9.75985 -9.67704 -9.28861 -8.83774 -7.99348 -6.21575 0.47676 0.56366 1.35377 1.38802 1.47466 2.40989 2.80614 3.18234 3.26913 3.44754 3.76380 3.96075 3.97317 4.09331 4.12912 4.21402 4.31577 4.36063 4.42957 4.51792 4.57215 4.63854 4.66438 4.71566 4.75815 4.79864 4.80485 4.81732 4.84740 4.94185 4.97325 5.02864 5.15368 5.16158 5.17926 5.22257 5.22998 5.34798 5.41003 5.46810 5.49006 5.56664 5.61863 5.67250 5.67883 5.75387 5.85006 5.98270 6.09628 6.13958 6.19619 6.25268 6.44124 6.75341 7.01440 7.48552 8.94785 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.002864 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.993518 B = 9773.109438 C =10291.486764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.223 3.777 4 H 0.005 0.995 5 C -0.545 4.545 6 H 0.050 0.950 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.532 5.532 14 C 0.035 3.965 15 C 0.074 3.926 16 C -0.074 4.074 17 H 0.045 0.955 18 C -0.101 4.101 19 C 0.047 3.953 20 N -0.525 5.525 21 C 0.087 3.913 22 C -0.087 4.087 23 C -0.122 4.122 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.131 4.131 27 C -0.117 4.117 28 C 0.050 3.950 29 H 0.028 0.972 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.031 0.969 34 H 0.259 0.741 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.013 0.987 38 H 0.018 0.982 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.127 0.873 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.136 0.864 50 H 0.122 0.878 51 H 0.072 0.928 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.133 16.591 -6.727 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C 0.116 3.884 4 H 0.023 0.977 5 C -0.585 4.585 6 H 0.068 0.932 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.769 3.231 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.255 5.255 14 C -0.114 4.114 15 C -0.055 4.055 16 C -0.093 4.093 17 H 0.064 0.936 18 C -0.139 4.139 19 C -0.081 4.081 20 N -0.249 5.249 21 C -0.041 4.041 22 C -0.087 4.087 23 C -0.141 4.141 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.149 4.149 27 C -0.136 4.136 28 C -0.078 4.078 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.032 0.968 38 H 0.036 0.964 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.071 0.929 46 H 0.144 0.856 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.154 0.846 50 H 0.140 0.860 51 H 0.090 0.910 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.714 16.435 -6.058 21.643 hybrid contribution 2.351 -0.304 -0.079 2.372 sum -10.362 16.131 -6.137 20.131 Atomic orbital electron populations 1.21564 0.96382 0.99790 1.00496 1.21442 0.94413 0.98559 1.00142 1.18990 0.91275 0.91156 0.86978 0.97671 1.22010 0.94293 1.36877 1.05285 0.93175 1.25578 1.01506 0.95188 0.95622 1.70015 1.36082 1.39017 1.09989 0.85754 0.81948 0.77601 0.77794 1.19599 1.20932 1.20797 1.62398 1.57439 1.02014 1.03604 1.22227 0.96924 0.99413 0.92794 1.21902 0.96108 0.89021 0.98465 1.21815 0.95344 0.93750 0.98439 0.93613 1.22176 0.94776 0.95967 1.00984 1.22830 0.95485 0.93231 0.96562 1.64716 1.03549 1.01859 1.54753 1.21211 0.95768 0.88666 0.98414 1.19840 0.95316 0.98418 0.95159 1.21249 0.92713 0.99878 1.00249 1.21414 0.98353 0.98295 0.96550 1.21460 0.98865 0.99661 0.94754 1.21422 0.92926 0.99885 1.00641 1.21212 0.98973 0.98102 0.95292 1.23120 0.91451 0.93430 0.99828 0.95260 0.92093 0.93771 0.92368 0.95053 0.93123 0.92487 0.91272 0.96812 0.96380 0.90846 0.90754 0.92611 0.92578 0.91489 0.89727 0.92914 0.85555 0.84235 0.84160 0.84587 0.86019 0.90956 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 9.85 71.98 0.71 -4.32 16 2 C -0.11 -5.11 5.08 30.59 0.16 -4.95 16 3 C 0.22 10.94 1.65 44.17 0.07 11.01 16 4 H 0.01 0.30 6.69 -2.39 -0.02 0.29 16 5 C -0.55 -29.18 6.78 25.60 0.17 -29.00 16 6 H 0.05 2.69 5.98 -2.91 -0.02 2.68 16 7 C 0.02 1.13 5.29 84.66 0.45 1.58 16 8 N -0.91 -52.39 11.30 21.45 0.24 -52.14 16 9 Si 0.94 43.72 29.54 68.60 2.03 45.75 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.53 -21.37 3.77 -901.50 -3.39 -24.77 16 14 C 0.03 1.30 8.92 127.69 1.14 2.43 16 15 C 0.07 2.69 4.19 86.30 0.36 3.05 16 16 C -0.07 -2.50 3.09 -9.59 -0.03 -2.53 16 17 H 0.05 1.92 6.84 -2.39 -0.02 1.91 16 18 C -0.10 -2.93 6.29 31.47 0.20 -2.74 16 19 C 0.05 1.17 5.63 86.45 0.49 1.66 16 20 N -0.52 -13.91 5.26 -887.59 -4.66 -18.57 16 21 C 0.09 1.87 4.92 85.56 0.42 2.29 16 22 C -0.09 -1.86 5.10 -19.86 -0.10 -1.96 16 23 C -0.12 -2.34 8.95 22.27 0.20 -2.14 16 24 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 25 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 26 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 27 C -0.12 -2.47 9.70 22.27 0.22 -2.26 16 28 C 0.05 1.40 5.98 86.65 0.52 1.92 16 29 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.06 2.30 7.59 -2.39 -0.02 2.29 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 3.17 5.97 -2.39 -0.01 3.16 16 33 H 0.03 1.46 6.41 -2.38 -0.02 1.44 16 34 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.06 2.10 6.60 -2.39 -0.02 2.09 16 36 H 0.07 2.11 7.84 -2.38 -0.02 2.09 16 37 H 0.01 0.56 6.07 -2.39 -0.01 0.54 16 38 H 0.02 0.76 6.71 -2.39 -0.02 0.74 16 39 H 0.07 2.28 7.71 -2.39 -0.02 2.26 16 40 H 0.07 2.03 7.83 -2.38 -0.02 2.01 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.20 6.94 -2.39 -0.02 1.18 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.74 8.06 -2.38 -0.02 1.72 16 45 H 0.05 1.02 7.76 -2.39 -0.02 1.01 16 46 H 0.13 2.09 7.50 -2.91 -0.02 2.07 16 47 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 48 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 49 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 50 H 0.12 2.45 8.06 -2.91 -0.02 2.42 16 51 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 52 H 0.06 1.45 7.93 -2.39 -0.02 1.43 16 Total: -1.00 -60.19 394.42 0.71 -59.48 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.86 Total: 22.21 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 5.64 Total: -31.96 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -7.82 Total: -95.48 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -60.19 0.71 -59.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383074535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.652 kcal (2) G-P(sol) polarization free energy of solvation -60.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds