Wall clock time and date at job start Fri Apr 10 2020 23:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47241 * 2 1 4 4 H 1.08997 * 109.46897 * 305.48388 * 3 2 1 5 5 C 1.50700 * 109.47009 * 185.48375 * 3 2 1 6 6 H 1.08003 * 119.99285 * 239.99631 * 5 3 2 7 7 C 1.37870 * 120.00302 * 59.99877 * 5 3 2 8 8 N 1.31517 * 119.99622 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00143 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46907 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46959 * 120.00307 * 9 7 5 12 12 H 1.48498 * 109.46996 * 239.99881 * 9 7 5 13 13 N 1.46901 * 109.46934 * 65.48084 * 3 2 1 14 14 C 1.46904 * 111.00071 * 40.54547 * 13 3 2 15 15 C 1.46894 * 111.00126 * 276.58469 * 13 3 2 16 16 H 1.09000 * 109.50104 * 54.61093 * 15 13 3 17 17 C 1.53110 * 109.50907 * 294.52921 * 15 13 3 18 18 C 1.53118 * 109.16576 * 182.36537 * 17 15 13 19 19 C 1.53039 * 109.27974 * 57.65171 * 18 17 15 20 20 N 1.46852 * 109.52301 * 300.82667 * 19 18 17 21 21 C 1.46899 * 110.99750 * 185.83682 * 20 19 18 22 22 C 1.50698 * 109.46988 * 66.04408 * 21 20 19 23 23 C 1.38234 * 119.99755 * 90.00333 * 22 21 20 24 24 C 1.38243 * 119.99664 * 179.72291 * 23 22 21 25 25 C 1.38230 * 119.99993 * 0.25426 * 24 23 22 26 26 C 1.38235 * 120.00192 * 0.02562 * 25 24 23 27 27 C 1.38229 * 119.99947 * 359.97438 * 26 25 24 28 28 C 1.46849 * 111.19875 * 61.73903 * 20 19 18 29 29 H 1.09000 * 109.47416 * 162.43919 * 1 2 3 30 30 H 1.09000 * 109.47235 * 282.44147 * 1 2 3 31 31 H 1.09007 * 109.47180 * 42.44085 * 1 2 3 32 32 H 1.08993 * 109.47034 * 239.99621 * 2 1 3 33 33 H 1.09004 * 109.46915 * 119.99506 * 2 1 3 34 34 H 0.97008 * 119.99430 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.46557 * 296.04185 * 14 13 3 36 36 H 1.08995 * 109.46996 * 56.04325 * 14 13 3 37 37 H 1.09000 * 109.46845 * 176.04540 * 14 13 3 38 38 H 1.09004 * 109.52221 * 62.45966 * 17 15 13 39 39 H 1.09001 * 109.57605 * 302.30410 * 17 15 13 40 40 H 1.09004 * 109.50017 * 297.71509 * 18 17 15 41 41 H 1.08998 * 109.50720 * 177.60098 * 18 17 15 42 42 H 1.08993 * 109.46153 * 180.80406 * 19 18 17 43 43 H 1.08999 * 109.45634 * 60.83780 * 19 18 17 44 44 H 1.09000 * 109.47084 * 306.04677 * 21 20 19 45 45 H 1.08992 * 109.46977 * 186.04565 * 21 20 19 46 46 H 1.07998 * 120.00399 * 359.97438 * 23 22 21 47 47 H 1.07997 * 119.99677 * 180.27251 * 24 23 22 48 48 H 1.08005 * 120.00256 * 179.97438 * 25 24 23 49 49 H 1.07999 * 119.99822 * 179.97438 * 26 25 24 50 50 H 1.08005 * 120.00180 * 179.97438 * 27 26 25 51 51 H 1.08998 * 109.46163 * 58.27503 * 28 20 19 52 52 H 1.08993 * 109.46010 * 178.24143 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5987 1.9839 -0.8368 5 6 3.5409 1.4446 -0.1358 6 1 4.1522 1.8871 0.6368 7 6 4.1334 0.8818 -1.2462 8 7 3.3888 0.3436 -2.1871 9 14 5.9938 0.8851 -1.4148 10 1 6.5970 1.5468 -0.2300 11 1 6.4852 -0.5134 -1.5038 12 1 6.3781 1.6239 -2.6442 13 7 1.6613 2.0957 1.2601 14 6 1.8269 1.1811 2.3977 15 6 0.2871 2.6105 1.1940 16 1 -0.3904 1.8042 0.9128 17 6 0.2099 3.7298 0.1522 18 6 -1.2109 4.3004 0.1317 19 6 -1.5727 4.8055 1.5303 20 7 -1.4846 3.6976 2.4902 21 6 -1.9582 4.1122 3.8175 22 6 -3.4332 4.4141 3.7527 23 6 -4.3549 3.4120 3.9919 24 6 -5.7080 3.6903 3.9381 25 6 -6.1392 4.9693 3.6400 26 6 -5.2176 5.9701 3.3952 27 6 -3.8646 5.6918 3.4490 28 6 -0.1181 3.1645 2.5619 29 1 -0.3634 -0.9798 -0.3101 30 1 -0.3634 0.2214 1.0035 31 1 -0.3634 0.7584 -0.6935 32 1 1.8932 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8057 -0.0528 -2.9682 35 1 1.1432 0.3392 2.2894 36 1 2.8531 0.8149 2.4231 37 1 1.6071 1.7108 3.3247 38 1 0.4558 3.3294 -0.8314 39 1 0.9157 4.5190 0.4110 40 1 -1.9119 3.5206 -0.1662 41 1 -1.2612 5.1262 -0.5779 42 1 -2.5890 5.1993 1.5225 43 1 -0.8797 5.5946 1.8219 44 1 -1.4182 5.0048 4.1335 45 1 -1.7828 3.3090 4.5331 46 1 -4.0180 2.4127 4.2247 47 1 -6.4280 2.9084 4.1293 48 1 -7.1964 5.1867 3.5976 49 1 -5.5546 6.9692 3.1619 50 1 -3.1445 6.4736 3.2573 51 1 0.5680 3.9614 2.8487 52 1 -0.0781 2.3667 3.3033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388426276.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:26:52 Heat of formation + Delta-G solvation = 27.873678 kcal Electronic energy + Delta-G solvation = -27704.275830 eV Core-core repulsion = 24282.116560 eV Total energy + Delta-G solvation = -3422.159270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.96939 -39.97768 -38.23966 -35.07824 -34.25414 -32.70266 -31.90654 -31.73551 -30.47864 -28.99091 -27.29299 -26.42373 -24.88017 -23.77483 -23.44879 -22.67946 -21.74291 -20.92160 -20.28792 -18.36424 -17.57657 -17.43506 -16.85243 -16.35163 -16.17175 -15.98684 -15.47837 -15.40987 -15.19175 -15.09514 -14.77684 -14.50281 -14.20705 -13.90924 -13.70753 -13.51292 -13.41593 -13.27279 -13.21011 -13.02095 -12.72886 -12.68830 -12.62255 -12.28103 -12.14560 -11.99487 -11.89634 -11.86243 -11.78221 -11.68988 -11.50093 -11.18652 -10.95572 -10.80412 -10.34074 -9.73294 -9.65204 -9.21270 -8.62154 -8.05233 -6.14931 0.48159 0.57794 1.40520 1.42998 1.54293 2.44639 2.73500 3.16925 3.22016 3.56529 3.81847 3.89913 4.01558 4.10898 4.13704 4.22987 4.31446 4.37826 4.41265 4.42247 4.49616 4.54381 4.59597 4.64208 4.65558 4.71282 4.75745 4.77684 4.80061 4.85912 4.88625 5.02003 5.04770 5.07854 5.15623 5.17630 5.19486 5.23348 5.29795 5.30730 5.45670 5.55131 5.62471 5.65727 5.69160 5.77309 5.79777 5.89876 6.09610 6.15824 6.20826 6.37427 6.63418 6.86397 6.99779 7.53783 8.99362 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.002872 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.081851 B = 9747.430975 C = 9881.320928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.146 4.146 3 C 0.224 3.776 4 H 0.012 0.988 5 C -0.507 4.507 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.541 5.541 14 C 0.035 3.965 15 C 0.073 3.927 16 H 0.058 0.942 17 C -0.107 4.107 18 C -0.107 4.107 19 C 0.060 3.940 20 N -0.537 5.537 21 C 0.096 3.904 22 C -0.085 4.085 23 C -0.113 4.113 24 C -0.130 4.130 25 C -0.128 4.128 26 C -0.128 4.128 27 C -0.124 4.124 28 C 0.075 3.925 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.259 0.741 35 H 0.025 0.975 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.032 0.968 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.124 0.876 47 H 0.136 0.864 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.125 0.875 51 H 0.031 0.969 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.733 9.020 12.523 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.185 4.185 3 C 0.117 3.883 4 H 0.030 0.970 5 C -0.546 4.546 6 H 0.067 0.933 7 C -0.187 4.187 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.265 5.265 14 C -0.113 4.113 15 C -0.036 4.036 16 H 0.075 0.925 17 C -0.145 4.145 18 C -0.145 4.145 19 C -0.067 4.067 20 N -0.261 5.261 21 C -0.031 4.031 22 C -0.086 4.086 23 C -0.132 4.132 24 C -0.148 4.148 25 C -0.146 4.146 26 C -0.146 4.146 27 C -0.142 4.142 28 C -0.053 4.053 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.142 0.858 47 H 0.154 0.846 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.143 0.857 51 H 0.049 0.951 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.674 8.967 12.273 23.311 hybrid contribution 1.385 -0.356 -0.484 1.510 sum -16.289 8.611 11.789 21.874 Atomic orbital electron populations 1.21937 0.96864 1.00087 1.00300 1.22073 0.93914 1.01318 1.01225 1.19093 0.93829 0.88910 0.86467 0.97014 1.21458 0.92786 1.35793 1.04542 0.93275 1.25623 1.01963 0.95451 0.95681 1.70022 1.35998 1.40071 1.09877 0.85583 0.81173 0.77500 0.77798 1.19526 1.20788 1.20915 1.62250 1.21858 1.37823 1.04605 1.22286 1.00455 0.94900 0.93689 1.21919 0.89847 0.96843 0.94979 0.92476 1.21551 0.97018 0.97705 0.98224 1.21521 0.95358 1.00765 0.96870 1.22130 1.01326 0.91531 0.91760 1.61877 1.22432 1.33836 1.08004 1.21024 0.91479 1.00220 0.90364 1.19802 0.94831 0.94008 0.99925 1.21201 0.93334 0.98985 0.99630 1.21419 0.95739 0.97644 0.99966 1.21455 1.00629 0.93156 0.99405 1.21394 0.92887 1.00297 1.00023 1.21237 0.96567 0.96296 1.00115 1.22025 0.87819 0.98706 0.96778 0.93608 0.92386 0.94364 0.91841 0.94204 0.93216 0.95708 0.93362 0.91006 0.94189 0.93042 0.92068 0.90277 0.89482 0.94964 0.93647 0.89497 0.85835 0.84582 0.84248 0.84348 0.85693 0.95102 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 8.09 71.98 0.58 -4.79 16 2 C -0.15 -6.94 4.72 30.59 0.14 -6.80 16 3 C 0.22 11.22 1.75 44.17 0.08 11.29 16 4 H 0.01 0.67 5.74 -2.39 -0.01 0.66 16 5 C -0.51 -28.23 8.27 25.60 0.21 -28.01 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.60 5.29 84.65 0.45 1.05 16 8 N -0.92 -53.19 11.29 21.45 0.24 -52.95 16 9 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 N -0.54 -22.79 4.47 -875.91 -3.92 -26.70 16 14 C 0.03 1.30 7.58 127.69 0.97 2.27 16 15 C 0.07 2.59 1.76 44.97 0.08 2.66 16 16 H 0.06 2.15 3.80 -2.39 -0.01 2.14 16 17 C -0.11 -3.80 5.20 30.67 0.16 -3.64 16 18 C -0.11 -2.98 6.09 30.65 0.19 -2.79 16 19 C 0.06 1.47 5.15 86.33 0.44 1.91 16 20 N -0.54 -13.63 4.65 -900.94 -4.19 -17.82 16 21 C 0.10 2.01 5.12 85.56 0.44 2.45 16 22 C -0.09 -1.70 4.90 -19.87 -0.10 -1.80 16 23 C -0.11 -2.18 9.70 22.27 0.22 -1.96 16 24 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 25 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 26 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 27 C -0.12 -2.22 7.88 22.27 0.18 -2.05 16 28 C 0.07 2.18 4.16 86.33 0.36 2.54 16 29 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 2.11 5.23 -2.39 -0.01 2.10 16 31 H 0.04 1.56 7.44 -2.38 -0.02 1.54 16 32 H 0.06 3.47 5.94 -2.39 -0.01 3.46 16 33 H 0.04 1.85 6.09 -2.38 -0.01 1.84 16 34 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 35 H 0.02 0.90 5.19 -2.39 -0.01 0.89 16 36 H 0.05 1.97 7.69 -2.39 -0.02 1.95 16 37 H 0.07 2.24 6.22 -2.39 -0.01 2.23 16 38 H 0.04 1.65 6.31 -2.39 -0.02 1.64 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.09 1.93 5.73 -2.39 -0.01 1.91 16 43 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.05 0.91 8.07 -2.39 -0.02 0.89 16 45 H 0.09 1.70 7.93 -2.39 -0.02 1.68 16 46 H 0.12 2.24 8.06 -2.91 -0.02 2.22 16 47 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 49 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 50 H 0.13 1.99 7.93 -2.91 -0.02 1.97 16 51 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.08 2.18 6.24 -2.39 -0.01 2.17 16 Total: -1.00 -61.27 379.81 0.11 -61.16 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.88 Total: 22.87 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 5.06 Total: -33.12 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -7.86 Total: -97.47 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -61.27 0.11 -61.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388426276.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.034 kcal (2) G-P(sol) polarization free energy of solvation -61.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds