Wall clock time and date at job start Fri Apr 10 2020 23:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35900 * 117.00479 * 2 1 4 4 C 1.38838 * 119.91438 * 180.02562 * 3 2 1 5 5 C 1.37881 * 120.08931 * 180.02562 * 4 3 2 6 6 C 1.39584 * 119.91028 * 359.97438 * 5 4 3 7 7 C 1.47840 * 120.08696 * 179.97438 * 6 5 4 8 8 C 1.34786 * 125.27064 * 180.02562 * 7 6 5 9 9 C 1.38012 * 114.69309 * 180.02562 * 8 7 6 10 10 C 1.33574 * 115.06572 * 0.02562 * 9 8 7 11 11 C 1.50703 * 125.11401 * 180.02562 * 10 9 8 12 12 N 1.46496 * 109.47001 * 90.00006 * 11 10 9 13 13 C 1.34776 * 119.99680 * 180.02562 * 12 11 10 14 14 O 1.21689 * 120.00487 * 359.97438 * 13 12 11 15 15 C 1.46382 * 119.99993 * 180.02562 * 13 12 11 16 16 H 1.08000 * 119.99528 * 353.93496 * 15 13 12 17 17 C 1.40050 * 120.00292 * 173.93559 * 15 13 12 18 18 N 1.30671 * 119.99883 * 6.14945 * 17 15 13 19 19 Si 1.86791 * 120.00240 * 186.14869 * 17 15 13 20 20 H 1.48501 * 109.47203 * 94.98275 * 19 17 15 21 21 H 1.48501 * 109.47387 * 214.98685 * 19 17 15 22 22 H 1.48506 * 109.47119 * 334.98575 * 19 17 15 23 23 S 1.75853 * 109.76674 * 359.73448 * 10 9 8 24 24 C 1.39584 * 119.82268 * 0.25742 * 6 5 4 25 25 C 1.37875 * 119.90841 * 359.48853 * 24 6 5 26 26 H 1.08999 * 109.47048 * 59.99659 * 1 2 3 27 27 H 1.08995 * 109.47528 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46844 * 300.00125 * 1 2 3 29 29 H 1.08001 * 119.95261 * 0.02562 * 4 3 2 30 30 H 1.07997 * 120.04145 * 180.02562 * 5 4 3 31 31 H 1.08002 * 122.64703 * 359.97438 * 8 7 6 32 32 H 1.08003 * 122.46381 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.46706 * 209.99555 * 11 10 9 34 34 H 1.08999 * 109.46969 * 329.99849 * 11 10 9 35 35 H 0.96998 * 120.00123 * 359.97438 * 12 11 10 36 36 H 0.96998 * 120.00067 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.04177 * 179.72227 * 24 6 5 38 38 H 1.08006 * 119.95710 * 180.25538 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4327 1.2813 -0.0005 5 6 4.0625 2.5079 0.0000 6 6 3.3041 3.6797 0.0005 7 6 3.9753 4.9969 0.0017 8 6 3.3482 6.1900 0.0028 9 6 4.1899 7.2838 0.0031 10 6 5.4940 6.9943 0.0018 11 6 6.6073 8.0099 0.0025 12 7 6.9690 8.3371 1.3839 13 6 7.9478 9.2301 1.6306 14 8 8.5314 9.7644 0.7061 15 6 8.3097 9.5567 3.0109 16 1 7.7293 9.1582 3.8300 17 6 9.4085 10.3857 3.2694 18 7 10.0372 10.9644 2.2808 19 14 9.9752 10.6643 5.0274 20 1 11.0672 9.7118 5.3522 21 1 10.4727 12.0559 5.1725 22 1 8.8362 10.4465 5.9551 23 16 5.7159 5.2499 0.0077 24 6 1.9103 3.6045 0.0060 25 6 1.2881 2.3741 0.0001 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 4.0187 0.3741 -0.0014 30 1 5.1411 2.5618 -0.0008 31 1 2.2722 6.2827 0.0025 32 1 3.8213 8.2989 0.0036 33 1 7.4752 7.5979 -0.5125 34 1 6.2756 8.9130 -0.5099 35 1 6.5036 7.9116 2.1208 36 1 10.7984 11.5383 2.4598 37 1 1.3201 4.5090 0.0109 38 1 0.2097 2.3151 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153939938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:27:49 Heat of formation + Delta-G solvation = -22.254668 kcal Electronic energy + Delta-G solvation = -21847.452208 eV Core-core repulsion = 18360.654135 eV Total energy + Delta-G solvation = -3486.798073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42352 -38.46662 -37.60431 -36.80261 -33.62802 -32.39487 -31.57062 -31.31230 -29.00428 -27.73212 -26.34588 -24.99080 -23.50657 -22.41038 -21.86695 -19.72819 -18.95226 -18.50915 -17.70676 -16.87717 -16.10507 -16.02735 -15.73534 -15.33562 -15.11821 -14.45590 -14.12181 -14.07876 -13.95619 -13.64411 -13.47949 -13.35066 -12.61184 -12.40250 -12.35562 -12.16015 -12.13989 -11.71737 -11.43202 -11.33124 -11.15975 -11.12246 -10.88567 -10.55420 -10.45288 -10.22702 -9.37196 -9.27081 -8.85628 -8.40447 -7.85855 -7.56362 -7.54296 -6.20399 -4.64706 0.42609 1.04312 1.58563 1.63097 2.08205 2.80544 2.90231 3.14185 3.21437 3.25112 3.59028 4.11401 4.43919 4.50032 4.53831 4.57309 4.70561 4.73831 4.92979 4.98234 5.04911 5.10207 5.14849 5.30154 5.47252 5.55780 5.70483 5.71768 5.86574 5.99758 6.02348 6.16378 6.28541 6.32571 6.42348 6.44379 6.63942 7.02447 7.43308 7.89515 8.03403 8.31886 9.01634 9.49748 10.57652 10.75638 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.028447 B = 0.002196 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.033654 B =12748.047240 C =13096.479781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.123 3.877 4 C -0.143 4.143 5 C -0.074 4.074 6 C -0.042 4.042 7 C -0.154 4.154 8 C -0.124 4.124 9 C -0.130 4.130 10 C -0.171 4.171 11 C 0.200 3.800 12 N -0.763 5.763 13 C 0.555 3.445 14 O -0.581 6.581 15 C -0.544 4.544 16 H 0.069 0.931 17 C 0.087 3.913 18 N -0.767 5.767 19 Si 0.908 3.092 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.265 1.265 23 S 0.130 5.870 24 C -0.065 4.065 25 C -0.202 4.202 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.382 0.618 36 H 0.268 0.732 37 H 0.130 0.870 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.213 -19.339 -4.251 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.078 3.922 4 C -0.162 4.162 5 C -0.093 4.093 6 C -0.044 4.044 7 C -0.272 4.272 8 C -0.155 4.155 9 C -0.161 4.161 10 C -0.289 4.289 11 C 0.073 3.927 12 N -0.419 5.419 13 C 0.359 3.641 14 O -0.464 6.464 15 C -0.581 4.581 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.733 3.267 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.189 1.189 23 S 0.397 5.603 24 C -0.085 4.085 25 C -0.221 4.221 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.152 0.848 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.214 0.786 36 H 0.079 0.921 37 H 0.147 0.853 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.227 -19.925 -5.014 26.813 hybrid contribution -1.503 1.018 1.203 2.177 sum -18.730 -18.907 -3.812 26.885 Atomic orbital electron populations 1.23068 0.78333 1.03989 1.01451 1.86069 1.21444 1.26971 1.88645 1.19104 0.92328 0.84148 0.96655 1.20313 0.91328 0.98489 1.06039 1.21061 0.99799 0.90799 0.97626 1.17978 0.92671 0.90119 1.03620 1.22899 0.96775 0.95676 1.11835 1.20219 1.00784 0.90662 1.03830 1.20032 0.91748 1.00330 1.03945 1.24947 0.98803 0.96839 1.08309 1.19329 0.91928 0.93445 0.87991 1.46264 1.42349 1.49134 1.04188 1.18266 0.77594 0.77556 0.90655 1.90604 1.54493 1.54704 1.46556 1.20871 1.14560 1.31754 0.90924 0.91319 1.25711 0.95591 0.93735 0.98212 1.70025 1.15866 1.21671 1.32029 0.86348 0.79429 0.77970 0.82948 1.19775 1.20444 1.18868 1.84190 1.02420 1.01673 1.71994 1.20965 0.93148 0.97318 0.97028 1.21142 1.00068 0.92041 1.08878 0.92572 0.88213 0.92555 0.84812 0.85136 0.84526 0.84003 0.92210 0.91215 0.78594 0.92080 0.85265 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.86 10.49 -19.43 -0.20 -3.07 16 3 C 0.12 1.20 6.69 -39.14 -0.26 0.94 16 4 C -0.14 -1.43 9.97 -39.49 -0.39 -1.82 16 5 C -0.07 -0.79 9.59 -39.21 -0.38 -1.17 16 6 C -0.04 -0.48 5.87 -104.96 -0.62 -1.09 16 7 C -0.15 -1.95 6.37 -36.88 -0.23 -2.19 16 8 C -0.12 -1.52 9.65 -40.89 -0.39 -1.91 16 9 C -0.13 -1.81 10.03 -41.30 -0.41 -2.22 16 10 C -0.17 -2.69 5.88 -35.94 -0.21 -2.90 16 11 C 0.20 3.90 6.16 -5.19 -0.03 3.86 16 12 N -0.76 -17.28 5.54 -62.90 -0.35 -17.63 16 13 C 0.56 15.87 7.74 -12.98 -0.10 15.77 16 14 O -0.58 -18.85 15.05 5.20 0.08 -18.78 16 15 C -0.54 -15.45 9.54 -35.63 -0.34 -15.79 16 16 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 17 C 0.09 2.45 5.49 -17.37 -0.10 2.35 16 18 N -0.77 -23.06 11.85 55.55 0.66 -22.40 16 19 Si 0.91 20.21 29.56 -169.99 -5.03 15.19 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 23 S 0.13 1.80 22.24 -107.50 -2.39 -0.59 16 24 C -0.06 -0.62 9.53 -39.21 -0.37 -1.00 16 25 C -0.20 -1.78 9.02 -39.49 -0.36 -2.13 16 26 H 0.06 0.23 7.65 -51.93 -0.40 -0.16 16 27 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.30 7.28 -52.49 -0.38 0.92 16 31 H 0.14 1.31 6.89 -52.49 -0.36 0.95 16 32 H 0.14 1.83 8.06 -52.48 -0.42 1.40 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.38 7.84 8.44 -40.82 -0.34 7.50 16 36 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 37 H 0.13 1.02 6.75 -52.49 -0.35 0.66 16 38 H 0.13 0.82 6.28 -52.48 -0.33 0.49 16 LS Contribution 345.04 15.07 5.20 5.20 Total: -1.00 -34.96 345.04 -9.47 -44.43 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.23 Total: 5.82 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.21 Total: -8.16 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.31 Total: -40.04 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.13 Total: -21.84 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.19 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.39 Total: -0.59 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.96 -9.47 -44.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153939938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.171 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds