Wall clock time and date at job start Fri Apr 10 2020 23:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 O 1.45204 * 109.47240 * 240.00014 * 2 1 3 5 5 C 1.34230 * 116.99910 * 90.00151 * 4 2 1 6 6 O 1.20827 * 119.99865 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00003 * 180.02562 * 5 4 2 8 8 S 1.80997 * 109.47329 * 179.97438 * 7 5 4 9 9 C 1.76205 * 100.00143 * 179.97438 * 8 7 5 10 10 H 1.07990 * 119.99686 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99826 * 179.97438 * 9 8 7 12 12 N 1.31634 * 120.00182 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99843 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46907 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47200 * 119.99976 * 13 11 9 16 16 H 1.48501 * 109.46827 * 240.00132 * 13 11 9 17 17 C 1.50695 * 109.47341 * 120.00052 * 2 1 3 18 18 C 1.39333 * 120.03713 * 85.02219 * 17 2 1 19 19 N 1.31090 * 121.75205 * 179.97438 * 18 17 2 20 20 C 1.33676 * 121.32029 * 0.04446 * 19 18 17 21 21 C 1.40593 * 121.08135 * 179.97438 * 20 19 18 22 22 C 1.36079 * 119.75049 * 179.97438 * 21 20 19 23 23 C 1.39356 * 121.07007 * 0.02562 * 22 21 20 24 24 C 1.36140 * 120.86293 * 0.22971 * 23 22 21 25 25 C 1.40430 * 119.61332 * 359.50040 * 24 23 22 26 26 C 1.36578 * 120.03234 * 265.00246 * 17 2 1 27 27 H 1.09000 * 109.47124 * 60.00198 * 1 2 3 28 28 H 1.09006 * 109.47028 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47629 * 300.00119 * 1 2 3 30 30 H 1.08999 * 109.47049 * 299.99555 * 7 5 4 31 31 H 1.09002 * 109.47451 * 59.99275 * 7 5 4 32 32 H 0.97000 * 120.00000 * 180.02562 * 12 11 9 33 33 H 1.07998 * 119.12133 * 359.97438 * 18 17 2 34 34 H 1.08008 * 120.12677 * 359.95306 * 21 20 19 35 35 H 1.08004 * 119.46458 * 179.97438 * 22 21 20 36 36 H 1.07992 * 119.56897 * 179.97438 * 23 22 21 37 37 H 1.07998 * 120.19504 * 179.75901 * 24 23 22 38 38 H 1.07995 * 120.92798 * 0.04545 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0640 -2.2811 6 8 1.9973 1.2517 -2.2506 7 6 2.7183 -0.5771 -3.5495 8 16 2.8888 0.6840 -4.8365 9 6 3.4726 -0.3133 -6.1667 10 1 3.6162 -1.3740 -6.0236 11 6 3.7468 0.2643 -7.3987 12 7 3.5712 1.5571 -7.5732 13 14 4.3650 -0.7931 -8.8091 14 1 4.4776 -2.2034 -8.3580 15 1 3.4115 -0.7106 -9.9445 16 1 5.6981 -0.3057 -9.2457 17 6 2.0323 -0.7104 1.2304 18 6 2.1661 -2.0973 1.2292 19 7 2.6002 -2.7493 2.2803 20 6 2.9345 -2.1098 3.4056 21 6 3.3990 -2.8143 4.5302 22 6 3.7323 -2.1358 5.6617 23 6 3.6208 -0.7483 5.7275 24 6 3.1700 -0.0325 4.6608 25 6 2.8225 -0.6992 3.4747 26 6 2.3573 0.0047 2.3477 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.6871 -1.0408 -3.3640 31 1 2.0088 -1.3369 -3.8774 32 1 3.7625 1.9607 -8.4342 33 1 1.9053 -2.6497 0.3386 34 1 3.4907 -3.8899 4.4963 35 1 4.0882 -2.6816 6.5231 36 1 3.8916 -0.2344 6.6379 37 1 3.0842 1.0422 4.7249 38 1 2.2594 1.0800 2.3665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171337940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:28:03 Heat of formation + Delta-G solvation = -55.439360 kcal Electronic energy + Delta-G solvation = -22317.272450 eV Core-core repulsion = 18829.035381 eV Total energy + Delta-G solvation = -3488.237069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.087 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.09055 -41.41551 -38.56910 -37.47377 -35.12360 -34.61070 -33.24554 -31.25815 -31.12558 -30.08919 -27.71583 -25.78120 -25.19021 -23.41391 -23.15349 -21.85299 -19.94737 -19.08046 -18.95375 -18.04894 -17.80579 -17.37894 -16.90578 -16.78981 -16.08384 -15.63290 -15.49933 -15.34470 -15.02878 -14.82669 -14.57368 -14.36573 -14.20943 -14.07099 -13.66634 -13.24346 -13.15726 -12.92445 -12.77181 -12.70333 -12.64610 -12.39926 -12.25808 -11.95545 -11.76728 -11.58867 -11.40279 -11.17575 -10.53985 -10.37717 -9.74128 -9.25928 -8.72989 -8.37871 -6.16945 -0.63720 -0.26118 0.91084 1.04967 1.11986 1.40872 1.41779 1.55804 1.81300 1.97026 2.23425 2.97309 3.06337 3.14826 3.26705 3.46737 3.62207 3.71208 3.74198 3.92787 4.01742 4.03243 4.09660 4.18487 4.28173 4.35528 4.44754 4.53446 4.63278 4.71443 4.76609 4.95819 5.01796 5.09850 5.10804 5.30631 5.39274 5.41697 5.47552 5.52452 5.89367 6.18405 6.66729 6.84859 7.04345 8.71496 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.026998 B = 0.002321 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.848467 B =12061.957617 C =12450.105897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.092 0.908 4 O -0.345 6.345 5 C 0.492 3.508 6 O -0.515 6.515 7 C -0.110 4.110 8 S -0.135 6.135 9 C -0.547 4.547 10 H 0.085 0.915 11 C 0.016 3.984 12 N -0.909 5.909 13 Si 0.999 3.001 14 H -0.258 1.258 15 H -0.273 1.273 16 H -0.274 1.274 17 C -0.149 4.149 18 C 0.147 3.853 19 N -0.500 5.500 20 C 0.100 3.900 21 C -0.119 4.119 22 C -0.089 4.089 23 C -0.116 4.116 24 C -0.098 4.098 25 C -0.119 4.119 26 C -0.039 4.039 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.272 0.728 33 H 0.167 0.833 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.523 -6.345 27.689 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.075 3.925 3 H 0.110 0.890 4 O -0.262 6.262 5 C 0.334 3.666 6 O -0.403 6.403 7 C -0.258 4.258 8 S 0.092 5.908 9 C -0.695 4.695 10 H 0.103 0.897 11 C -0.189 4.189 12 N -0.545 5.545 13 Si 0.821 3.179 14 H -0.181 1.181 15 H -0.198 1.198 16 H -0.199 1.199 17 C -0.151 4.151 18 C -0.026 4.026 19 N -0.208 5.208 20 C -0.021 4.021 21 C -0.137 4.137 22 C -0.109 4.109 23 C -0.134 4.134 24 C -0.116 4.116 25 C -0.121 4.121 26 C -0.065 4.065 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.081 0.919 33 H 0.184 0.816 34 H 0.156 0.844 35 H 0.177 0.823 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.688 -5.667 27.764 28.464 hybrid contribution 0.396 -0.684 -1.282 1.506 sum -2.291 -6.351 26.483 27.330 Atomic orbital electron populations 1.22179 0.91551 1.04043 1.03902 1.21500 0.95793 0.95942 0.79230 0.88980 1.86527 1.77286 1.42283 1.20153 1.22917 0.73568 0.85376 0.84712 1.90653 1.48195 1.17465 1.83981 1.23099 1.06206 1.03866 0.92669 1.85485 1.87095 1.12951 1.05223 1.23220 1.51550 0.96887 0.97801 0.89691 1.26103 0.94903 0.96734 1.01197 1.70165 1.46720 1.12037 1.25626 0.84900 0.77860 0.78373 0.76801 1.18145 1.19833 1.19921 1.20299 1.03889 0.95526 0.95417 1.22970 0.91955 0.91477 0.96167 1.68121 1.12369 1.40230 1.00033 1.19410 0.98254 0.90959 0.93453 1.21026 1.00011 1.00980 0.91704 1.21349 0.96614 0.95002 0.97887 1.21377 0.98116 0.94192 0.99723 1.21356 0.97656 1.01439 0.91177 1.19042 1.02608 0.93955 0.96505 1.21608 0.92534 1.01567 0.90750 0.92342 0.90593 0.88411 0.86309 0.85889 0.91853 0.81569 0.84437 0.82259 0.82170 0.82627 0.81540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.53 71.98 0.69 -2.58 16 2 C 0.13 3.18 2.77 29.84 0.08 3.27 16 3 H 0.09 2.37 7.06 -2.39 -0.02 2.35 16 4 O -0.34 -10.26 9.02 -51.41 -0.46 -10.72 16 5 C 0.49 18.12 7.95 71.23 0.57 18.69 16 6 O -0.52 -21.90 15.08 21.96 0.33 -21.57 16 7 C -0.11 -4.36 6.27 71.23 0.45 -3.91 16 8 S -0.13 -7.22 20.58 -56.49 -1.16 -8.38 16 9 C -0.55 -30.57 9.50 67.95 0.65 -29.93 16 10 H 0.08 4.44 7.80 -2.92 -0.02 4.42 16 11 C 0.02 0.88 5.49 84.86 0.47 1.34 16 12 N -0.91 -54.57 13.22 21.65 0.29 -54.28 16 13 Si 1.00 43.01 29.55 68.60 2.03 45.03 16 14 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 15 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 C -0.15 -3.34 4.99 -19.99 -0.10 -3.44 16 18 C 0.15 3.61 10.48 85.07 0.89 4.50 16 19 N -0.50 -13.16 10.34 -188.64 -1.95 -15.12 16 20 C 0.10 2.32 6.60 40.29 0.27 2.58 16 21 C -0.12 -2.13 9.98 22.34 0.22 -1.91 16 22 C -0.09 -1.05 9.94 22.04 0.22 -0.83 16 23 C -0.12 -1.20 9.96 22.05 0.22 -0.98 16 24 C -0.10 -1.29 9.78 22.32 0.22 -1.08 16 25 C -0.12 -2.34 5.74 -21.28 -0.12 -2.46 16 26 C -0.04 -0.74 9.52 22.50 0.21 -0.52 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.12 4.34 8.14 -2.40 -0.02 4.32 16 31 H 0.12 4.40 8.14 -2.39 -0.02 4.38 16 32 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.17 3.81 7.60 -2.91 -0.02 3.79 16 34 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 36 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 37 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -73.67 349.38 5.06 -68.61 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.07 Total: 13.69 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 4.92 Total: -17.26 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -1.66 Total: -69.40 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.13 Total: -32.29 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -7.22 SS G_CDS: -1.16 Total: -8.38 kcal Total: -73.67 5.06 -68.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171337940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.166 kcal (2) G-P(sol) polarization free energy of solvation -73.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds