Wall clock time and date at job start Fri Apr 10 2020 23:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47262 * 2 1 4 4 O 1.45203 * 109.46820 * 119.99971 * 2 1 3 5 5 C 1.34233 * 116.99592 * 269.99766 * 4 2 1 6 6 O 1.20822 * 120.00380 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99716 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.47077 * 180.02562 * 7 5 4 9 9 C 1.76202 * 99.99797 * 179.97438 * 8 7 5 10 10 H 1.07994 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.38800 * 119.99655 * 179.97438 * 9 8 7 12 12 N 1.31628 * 120.00019 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00104 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46816 * 90.00197 * 13 11 9 15 15 H 1.48498 * 109.47274 * 209.99539 * 13 11 9 16 16 H 1.48499 * 109.47323 * 330.00207 * 13 11 9 17 17 C 1.50705 * 109.47119 * 239.99685 * 2 1 3 18 18 C 1.39321 * 120.03331 * 280.00003 * 17 2 1 19 19 N 1.31094 * 121.75020 * 179.97438 * 18 17 2 20 20 C 1.33676 * 121.32342 * 0.02562 * 19 18 17 21 21 C 1.40588 * 121.09131 * 179.97438 * 20 19 18 22 22 C 1.36078 * 119.75537 * 180.02562 * 21 20 19 23 23 C 1.39365 * 121.06443 * 359.96464 * 22 21 20 24 24 C 1.36128 * 120.86723 * 0.02562 * 23 22 21 25 25 C 1.40428 * 119.61690 * 0.02562 * 24 23 22 26 26 C 1.36576 * 120.02973 * 99.98309 * 17 2 1 27 27 H 1.08995 * 109.47649 * 300.00103 * 1 2 3 28 28 H 1.09008 * 109.47051 * 60.00567 * 1 2 3 29 29 H 1.08999 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47329 * 300.00118 * 7 5 4 31 31 H 1.08999 * 109.47431 * 59.99981 * 7 5 4 32 32 H 0.97004 * 120.00537 * 179.97438 * 12 11 9 33 33 H 1.07998 * 119.12758 * 0.27489 * 18 17 2 34 34 H 1.07999 * 120.12210 * 0.05104 * 21 20 19 35 35 H 1.07993 * 119.46396 * 180.02562 * 22 21 20 36 36 H 1.08000 * 119.56351 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.19291 * 179.97438 * 24 23 22 38 38 H 1.08003 * 120.93112 * 0.02562 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 1.1856 5 6 2.2170 0.0641 2.2811 6 8 1.9973 1.2518 2.2506 7 6 2.7192 -0.5769 3.5492 8 16 2.8894 0.6843 4.8363 9 6 3.4730 -0.3131 6.1665 10 1 3.6167 -1.3738 6.0235 11 6 3.7479 0.2647 7.3983 12 7 4.1834 -0.4803 8.3922 13 14 3.5000 2.0996 7.6455 14 1 2.1140 2.3529 8.1149 15 1 4.4645 2.5974 8.6589 16 1 3.7240 2.8071 6.3592 17 6 2.0323 -0.7105 -1.2305 18 6 2.0673 -2.1028 -1.2663 19 7 2.4972 -2.7552 -2.3190 20 6 2.9236 -2.1107 -3.4097 21 6 3.3841 -2.8153 -4.5358 22 6 3.8125 -2.1316 -5.6315 23 6 3.8026 -0.7382 -5.6591 24 6 3.3637 -0.0216 -4.5881 25 6 2.9153 -0.6941 -3.4398 26 6 2.4534 0.0099 -2.3117 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 2.0103 -1.3371 3.8774 31 1 3.6882 -1.0399 3.3633 32 1 4.3759 -0.0766 9.2529 33 1 1.7267 -2.6595 -0.4058 34 1 3.3974 -3.8952 -4.5313 35 1 4.1649 -2.6776 -6.4941 36 1 4.1477 -0.2203 -6.5417 37 1 3.3611 1.0579 -4.6211 38 1 2.4334 1.0897 -2.3012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171337944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:28:06 Heat of formation + Delta-G solvation = -36.502334 kcal Electronic energy + Delta-G solvation = -22365.335157 eV Core-core repulsion = 18877.919259 eV Total energy + Delta-G solvation = -3487.415898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27160 -40.26101 -37.74395 -36.39361 -34.26591 -32.51000 -32.45256 -30.51173 -29.91743 -29.23715 -25.71155 -24.95091 -24.47011 -22.51576 -22.41915 -20.74183 -18.44497 -18.09347 -17.77318 -16.99511 -16.92760 -16.13086 -15.80772 -15.06003 -14.93595 -14.73008 -14.53164 -14.24627 -14.11940 -13.81977 -13.58368 -13.34281 -13.16424 -12.84455 -12.53283 -12.26269 -12.07890 -11.98455 -11.72253 -11.45506 -11.33775 -11.07062 -10.94924 -10.76279 -10.57754 -10.23721 -9.89871 -9.74129 -9.07257 -9.03026 -8.64312 -8.60317 -7.04602 -6.34960 -4.09550 0.04648 0.46257 1.63988 2.33002 2.46506 2.60819 3.05798 3.27586 3.43451 3.48843 3.78806 3.93714 4.21925 4.26120 4.29785 4.45595 4.54836 4.61940 4.68149 4.77960 4.84432 4.87621 4.96089 5.03741 5.07520 5.20231 5.43056 5.43642 5.54460 5.62710 5.62924 5.71738 5.79007 5.89908 5.93479 6.01321 6.07049 6.21031 6.47081 6.53396 7.63145 7.87768 7.96832 8.36850 9.09925 10.74046 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.002386 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.809394 B =11731.370299 C =11910.764140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 H 0.097 0.903 4 O -0.351 6.351 5 C 0.481 3.519 6 O -0.488 6.488 7 C -0.100 4.100 8 S -0.140 6.140 9 C -0.523 4.523 10 H 0.092 0.908 11 C 0.097 3.903 12 N -0.876 5.876 13 Si 0.856 3.144 14 H -0.266 1.266 15 H -0.273 1.273 16 H -0.236 1.236 17 C -0.137 4.137 18 C 0.161 3.839 19 N -0.474 5.474 20 C 0.127 3.873 21 C -0.093 4.093 22 C -0.101 4.101 23 C -0.120 4.120 24 C -0.093 4.093 25 C -0.103 4.103 26 C -0.045 4.045 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.272 0.728 33 H 0.167 0.833 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 -0.986 -27.928 28.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.075 3.925 3 H 0.115 0.885 4 O -0.269 6.269 5 C 0.322 3.678 6 O -0.374 6.374 7 C -0.248 4.248 8 S 0.087 5.913 9 C -0.670 4.670 10 H 0.110 0.890 11 C -0.112 4.112 12 N -0.512 5.512 13 Si 0.681 3.319 14 H -0.191 1.191 15 H -0.198 1.198 16 H -0.160 1.160 17 C -0.140 4.140 18 C -0.012 4.012 19 N -0.182 5.182 20 C 0.006 3.994 21 C -0.112 4.112 22 C -0.121 4.121 23 C -0.138 4.138 24 C -0.112 4.112 25 C -0.105 4.105 26 C -0.071 4.071 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.184 0.816 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.397 -0.465 -27.924 28.272 hybrid contribution 0.211 0.367 0.450 0.618 sum -4.186 -0.098 -27.474 27.791 Atomic orbital electron populations 1.22192 0.92906 1.03549 1.03545 1.21308 0.94731 0.96340 0.80117 0.88483 1.86572 1.77609 1.42612 1.20113 1.23291 0.74131 0.85908 0.84434 1.90655 1.46957 1.16279 1.83472 1.23022 1.05401 1.04064 0.92296 1.84791 1.87566 1.12743 1.06249 1.22257 1.51451 0.97296 0.95988 0.89014 1.24701 0.93228 0.98693 0.94600 1.69929 1.42595 1.36117 1.02602 0.86748 0.79253 0.85194 0.80712 1.19119 1.19796 1.15975 1.20417 1.02164 0.95759 0.95625 1.22915 0.91784 0.90956 0.95523 1.68155 1.10766 1.39556 0.99685 1.18992 0.97217 0.89743 0.93450 1.20833 0.98364 1.00547 0.91459 1.20934 0.98605 0.94397 0.98193 1.20929 0.99851 0.94243 0.98750 1.21002 0.97948 1.00036 0.92200 1.18794 1.01952 0.94193 0.95599 1.21320 0.93715 1.00474 0.91559 0.90831 0.90713 0.91180 0.87051 0.87100 0.91800 0.81604 0.84636 0.85258 0.85464 0.85145 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.53 37.16 0.35 -1.29 16 2 C 0.13 1.54 2.76 -27.88 -0.08 1.46 16 3 H 0.10 1.18 7.02 -51.93 -0.36 0.82 16 4 O -0.35 -5.02 9.20 -39.26 -0.36 -5.38 16 5 C 0.48 8.36 7.95 36.01 0.29 8.64 16 6 O -0.49 -9.59 15.08 -18.75 -0.28 -9.87 16 7 C -0.10 -1.90 6.27 36.01 0.23 -1.67 16 8 S -0.14 -3.40 18.55 -107.50 -1.99 -5.40 16 9 C -0.52 -14.68 10.04 30.94 0.31 -14.37 16 10 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 11 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 12 N -0.88 -25.99 13.97 55.49 0.78 -25.21 16 13 Si 0.86 21.19 27.74 -169.99 -4.71 16.47 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.24 -5.78 6.74 56.52 0.38 -5.40 16 17 C -0.14 -1.51 4.95 -104.82 -0.52 -2.03 16 18 C 0.16 1.88 10.48 -17.46 -0.18 1.69 16 19 N -0.47 -5.98 10.34 -10.98 -0.11 -6.10 16 20 C 0.13 1.46 6.60 -84.86 -0.56 0.90 16 21 C -0.09 -0.87 9.98 -39.47 -0.39 -1.26 16 22 C -0.10 -0.72 9.94 -39.94 -0.40 -1.12 16 23 C -0.12 -0.81 9.95 -39.92 -0.40 -1.21 16 24 C -0.09 -0.73 9.77 -39.52 -0.39 -1.12 16 25 C -0.10 -1.06 5.74 -106.80 -0.61 -1.67 16 26 C -0.04 -0.44 9.50 -39.23 -0.37 -0.81 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.11 1.96 8.14 -51.92 -0.42 1.54 16 31 H 0.11 1.99 8.14 -51.92 -0.42 1.56 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 33 H 0.17 1.74 7.76 -52.49 -0.41 1.34 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 37 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 38 H 0.14 1.03 8.05 -52.48 -0.42 0.61 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -32.86 346.93 -8.86 -41.72 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.58 Total: -0.31 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.82 Total: -11.15 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.66 Total: -31.31 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.64 Total: -15.25 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.71 Total: 16.47 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.86 -8.86 -41.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171337944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.218 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds