Wall clock time and date at job start Fri Apr 10 2020 23:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46738 * 2 1 4 4 C 1.35709 * 116.99673 * 180.02562 * 3 2 1 5 5 C 1.38650 * 119.59607 * 180.02562 * 4 3 2 6 6 C 1.39756 * 118.95158 * 179.71648 * 5 4 3 7 7 C 1.48019 * 120.89756 * 180.02562 * 6 5 4 8 8 C 1.39936 * 119.88147 * 64.72752 * 7 6 5 9 9 C 1.36259 * 120.11925 * 179.71415 * 8 7 6 10 10 C 1.40938 * 119.87314 * 0.58109 * 9 8 7 11 11 C 1.41047 * 120.11502 * 179.67639 * 10 9 8 12 12 H 1.07998 * 120.00026 * 204.67457 * 11 10 9 13 13 C 1.40051 * 120.00211 * 24.67478 * 11 10 9 14 14 N 1.30768 * 119.99700 * 17.92697 * 13 11 10 15 15 Si 1.86801 * 119.99950 * 197.92699 * 13 11 10 16 16 H 1.48494 * 109.46859 * 90.00246 * 15 13 11 17 17 H 1.48504 * 109.46872 * 209.99860 * 15 13 11 18 18 H 1.48492 * 109.47118 * 329.99899 * 15 13 11 19 19 C 1.40901 * 119.76606 * 359.68920 * 10 9 8 20 20 C 1.36291 * 119.87563 * 0.02562 * 19 10 9 21 21 C 1.50697 * 119.93838 * 179.97438 * 20 19 10 22 22 C 1.40229 * 118.19675 * 0.02562 * 6 5 4 23 23 Cl 1.73595 * 120.45260 * 180.02562 * 22 6 5 24 24 C 1.37919 * 119.09391 * 359.97438 * 22 6 5 25 25 N 1.32026 * 120.96006 * 0.02562 * 24 22 6 26 26 H 1.08996 * 109.47692 * 60.00155 * 1 2 3 27 27 H 1.09010 * 109.47059 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47452 * 299.99765 * 1 2 3 29 29 H 1.08994 * 109.46999 * 240.00288 * 2 1 3 30 30 H 1.08993 * 109.47206 * 119.99731 * 2 1 3 31 31 H 1.07998 * 120.52470 * 359.73933 * 5 4 3 32 32 H 1.07996 * 119.93799 * 0.02562 * 8 7 6 33 33 H 1.07998 * 120.06077 * 180.27339 * 9 8 7 34 34 H 0.97006 * 119.99940 * 179.97438 * 14 13 11 35 35 H 1.08000 * 120.06345 * 180.02562 * 19 10 9 36 36 H 1.09006 * 109.46870 * 270.02196 * 21 20 19 37 37 H 1.09000 * 109.47271 * 30.01829 * 21 20 19 38 38 H 1.09003 * 109.47280 * 150.02535 * 21 20 19 39 39 H 1.07999 * 119.51970 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5252 -0.0005 5 6 3.8726 2.8101 0.0000 6 6 5.2600 2.9776 0.0055 7 6 5.8624 4.3297 0.0068 8 6 5.6685 5.1782 1.1025 9 6 6.2256 6.4217 1.1114 10 6 6.9880 6.8572 0.0089 11 6 7.5613 8.1459 0.0098 12 1 7.7893 8.6362 -0.9251 13 6 7.8350 8.7899 1.2230 14 7 7.8970 8.0980 2.3309 15 14 8.1113 10.6370 1.2585 16 1 6.8138 11.3275 1.4703 17 1 9.0399 10.9773 2.3663 18 1 8.6998 11.0743 -0.0328 19 6 7.1753 6.0008 -1.0941 20 6 6.6184 4.7568 -1.0901 21 6 6.8173 3.8399 -2.2693 22 6 6.0660 1.8301 0.0097 23 17 7.7962 1.9702 0.0172 24 6 5.4652 0.5886 0.0088 25 7 4.1502 0.4705 0.0036 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.2165 3.6679 -0.0034 32 1 5.0804 4.8450 1.9448 33 1 6.0790 7.0742 1.9594 34 1 8.0869 8.5439 3.1712 35 1 7.7590 6.3294 -1.9413 36 1 6.0163 3.9979 -2.9915 37 1 7.7773 4.0548 -2.7388 38 1 6.8022 2.8039 -1.9307 39 1 6.0793 -0.2997 0.0124 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245817240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:27:38 Heat of formation + Delta-G solvation = -4.185155 kcal Electronic energy + Delta-G solvation = -23232.016096 eV Core-core repulsion = 19743.957870 eV Total energy + Delta-G solvation = -3488.058226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.092 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.45158 -38.43196 -37.43733 -36.02085 -34.33365 -32.45004 -32.02939 -31.33193 -29.54602 -29.39234 -25.90284 -25.78366 -23.73345 -23.06627 -22.09446 -20.53635 -20.06438 -17.99038 -17.03875 -16.74420 -16.26049 -16.16634 -15.41220 -14.72099 -14.37649 -14.23927 -13.88908 -13.64612 -13.57976 -13.03473 -12.80856 -12.61176 -12.56871 -12.22348 -12.03570 -11.73301 -11.66286 -11.60958 -11.29917 -11.14343 -10.93179 -10.74227 -10.65698 -10.59003 -10.40078 -9.86577 -9.62712 -9.38051 -9.23512 -9.14119 -8.16182 -7.55626 -7.29134 -6.91636 -4.48354 1.26890 1.37836 2.51514 2.61288 2.99681 3.01562 3.03296 3.05889 3.17528 3.81959 3.89695 4.38609 4.45069 4.90030 4.94441 5.02645 5.19401 5.27633 5.36314 5.53685 5.60141 5.70618 5.83994 5.89615 5.95873 5.97259 6.05403 6.28067 6.30109 6.44731 6.56766 6.61267 6.87578 6.92747 7.13668 7.24449 7.33636 7.52706 7.77444 7.92694 7.94502 7.98583 8.15783 8.50274 8.74232 8.84726 10.01048 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.003447 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.321625 B = 8122.074297 C = 8956.854245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 O -0.307 6.307 4 C 0.320 3.680 5 C -0.185 4.185 6 C 0.106 3.894 7 C -0.218 4.218 8 C -0.065 4.065 9 C -0.173 4.173 10 C 0.125 3.875 11 C -0.451 4.451 12 H 0.081 0.919 13 C 0.075 3.925 14 N -0.779 5.779 15 Si 0.910 3.090 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.261 1.261 19 C -0.227 4.227 20 C -0.016 4.016 21 C -0.118 4.118 22 C -0.129 4.129 23 Cl -0.048 7.048 24 C 0.144 3.856 25 N -0.547 5.547 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.284 0.716 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 -11.241 -2.629 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.215 6.215 4 C 0.143 3.857 5 C -0.206 4.206 6 C 0.098 3.902 7 C -0.220 4.220 8 C -0.083 4.083 9 C -0.192 4.192 10 C 0.122 3.878 11 C -0.479 4.479 12 H 0.099 0.901 13 C -0.145 4.145 14 N -0.403 5.403 15 Si 0.734 3.266 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.184 1.184 19 C -0.247 4.247 20 C -0.016 4.016 21 C -0.175 4.175 22 C -0.159 4.159 23 Cl -0.019 7.019 24 C -0.011 4.011 25 N -0.272 5.272 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.163 0.837 32 H 0.106 0.894 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.267 -11.847 -2.369 14.099 hybrid contribution 0.773 1.368 0.210 1.585 sum -6.495 -10.479 -2.159 12.516 Atomic orbital electron populations 1.21818 0.93279 1.02634 1.03311 1.22546 0.94511 0.81475 1.02346 1.86247 1.17030 1.30207 1.88011 1.19723 0.83667 0.89906 0.92443 1.21314 0.94710 0.95468 1.09106 1.19048 0.90461 0.93496 0.87202 1.17544 1.12869 0.92466 0.99075 1.20310 0.98603 0.94117 0.95304 1.20938 1.01341 0.95968 1.00988 1.17680 0.87762 0.91827 0.90521 1.19689 1.34809 1.00068 0.93342 0.90078 1.26011 0.92637 1.00770 0.95043 1.69808 1.32604 1.37815 1.00028 0.86270 0.79170 0.81971 0.79157 1.19075 1.20167 1.18450 1.20505 1.08426 0.94440 1.01319 1.18927 0.95006 0.94396 0.93284 1.20951 1.00717 0.99231 0.96561 1.22114 0.86667 0.95128 1.12003 1.98355 1.08475 1.98299 1.96758 1.22115 0.89106 0.95580 0.94319 1.67308 1.05458 1.32769 1.21628 0.91688 0.90516 0.91685 0.91796 0.91783 0.83723 0.89355 0.86341 0.90510 0.88718 0.92910 0.92575 0.92075 0.82243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.07 0.75 6.03 37.16 0.22 0.98 16 3 O -0.31 -4.52 10.11 -18.83 -0.19 -4.71 16 4 C 0.32 5.20 7.48 -17.20 -0.13 5.07 16 5 C -0.19 -3.21 9.78 -38.86 -0.38 -3.59 16 6 C 0.11 1.97 4.62 -104.57 -0.48 1.49 16 7 C -0.22 -4.65 4.79 -104.63 -0.50 -5.15 16 8 C -0.06 -1.47 9.67 -39.66 -0.38 -1.85 16 9 C -0.17 -4.32 8.63 -39.27 -0.34 -4.65 16 10 C 0.12 3.19 5.57 -106.80 -0.60 2.59 16 11 C -0.45 -11.41 9.03 -37.84 -0.34 -11.75 16 12 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 13 C 0.08 1.81 5.13 -17.32 -0.09 1.72 16 14 N -0.78 -19.28 10.96 55.55 0.61 -18.67 16 15 Si 0.91 17.83 29.60 -169.99 -5.03 12.80 16 16 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 17 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 18 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 19 C -0.23 -5.37 9.36 -39.28 -0.37 -5.73 16 20 C -0.02 -0.34 5.36 -104.70 -0.56 -0.90 16 21 C -0.12 -2.14 9.13 36.00 0.33 -1.81 16 22 C -0.13 -2.20 5.11 -38.95 -0.20 -2.40 16 23 Cl -0.05 -0.80 25.70 -51.86 -1.33 -2.14 16 24 C 0.14 2.15 10.97 -17.58 -0.19 1.96 16 25 N -0.55 -8.52 9.19 -13.40 -0.12 -8.64 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.14 2.43 8.06 -52.49 -0.42 2.01 16 32 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.12 3.05 6.16 -52.49 -0.32 2.72 16 34 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 35 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.06 1.06 4.24 -51.93 -0.22 0.84 16 39 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -26.52 343.50 -9.26 -35.77 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.74 Total: 5.36 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -3.63 Total: -24.95 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.49 Total: -27.31 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.19 Total: -4.71 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.33 Total: -2.14 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -26.52 -9.26 -35.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245817240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.586 kcal (2) G-P(sol) polarization free energy of solvation -26.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds